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Carg21358 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21358
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLocalized to the inner membrane of the chloroplast
Genome locationCarg_Chr01:13180457..13183233
RNA-Seq ExpressionCarg21358
SyntenyCarg21358
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006486 - protein glycosylation (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0008250 - oligosaccharyltransferase complex (cellular component)
GO:0009706 - chloroplast inner membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608647.1 hypothetical protein SDJN03_01989, partial [Cucurbita argyrosperma subsp. sororia]3.7e-74100Show/hide
Query:  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD
        GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD
Subjt:  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD

Query:  EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI
        EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI
Subjt:  EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI

KAG7037964.1 hypothetical protein SDJN02_01597, partial [Cucurbita argyrosperma subsp. argyrosperma]3.6e-85100Show/hide
Query:  MYVPINCISLSLLSPIFLPGSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKA
        MYVPINCISLSLLSPIFLPGSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKA
Subjt:  MYVPINCISLSLLSPIFLPGSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKA

Query:  LAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI
        LAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI
Subjt:  LAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI

XP_022941515.1 uncharacterized protein LOC111446794 [Cucurbita moschata]1.9e-7399.33Show/hide
Query:  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD
        GSNLKTADKRFGSVSPTR LLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD
Subjt:  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD

Query:  EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI
        EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI
Subjt:  EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI

XP_022981122.1 uncharacterized protein LOC111480366 [Cucurbita maxima]4.1e-7398.67Show/hide
Query:  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD
        GSNLKTADKRFGSVSPTR LLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD
Subjt:  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD

Query:  EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI
        EEKA+EKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI
Subjt:  EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI

XP_023521457.1 uncharacterized protein LOC111785280 [Cucurbita pepo subsp. pepo]2.4e-7398.67Show/hide
Query:  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD
        GSNLKTADKRFGSVSPTR LLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGL+VGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD
Subjt:  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD

Query:  EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI
        EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI
Subjt:  EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI

TrEMBL top hitse value%identityAlignment
A0A1S3BV81 uncharacterized protein LOC1034938441.1e-6690Show/hide
Query:  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD
        GSNLKT DKR GS+SPT  +L+PGWVGKAKLSTFRRPLSVQAAYSDGGRSS+AGIFIGGFVLGG+IVGTLGCVYAPQISKA+AG DRKDLMRKLPKFIYD
Subjt:  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD

Query:  EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI
        EEKALEKTRKVLAQKIEQLNSAIDEVS+QLR ED PNGVAVNSDEVE AI
Subjt:  EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI

A0A6J1FC82 uncharacterized protein LOC1114427781.1e-6892.67Show/hide
Query:  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD
        GSNLKTADK  GSVSPT  LLNPGWVGKAKLST RRPLSVQAAYSDGGRSS+AGIF+GGFVLGGLIVGTLGCVYAPQISKALAGTDRK+LMRKLPKFIYD
Subjt:  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD

Query:  EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI
        EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRT+D PNGVAVNSDE+EPAI
Subjt:  EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI

A0A6J1FTW3 uncharacterized protein LOC1114467949.0e-7499.33Show/hide
Query:  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD
        GSNLKTADKRFGSVSPTR LLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD
Subjt:  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD

Query:  EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI
        EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI
Subjt:  EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI

A0A6J1IGB6 uncharacterized protein LOC1114744365.6e-6892Show/hide
Query:  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD
        GSNLKTADK  GSVSPT  LLNPGWVGKAKLST RRPLSVQAAYSD GRSS+AGIF+GGFVLGGLIVGTLGCVYAPQISKALAGTDRK+LMRKLPKFIYD
Subjt:  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD

Query:  EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI
        EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRT+D PNGVAVNSDE+EPAI
Subjt:  EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI

A0A6J1IT36 uncharacterized protein LOC1114803662.0e-7398.67Show/hide
Query:  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD
        GSNLKTADKRFGSVSPTR LLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD
Subjt:  GSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD

Query:  EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI
        EEKA+EKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI
Subjt:  EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G42960.1 expressed protein localized to the inner membrane of the chloroplast.3.6e-4375.22Show/hide
Query:  RRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTED
        +R L++Q+AY D   S S G+F+GGF+LGGLIVG LGCVYAPQISKA+AG DRKDLMRKLPKFIYDEEKALEKTRKVLA+KI QLNSAID+VSSQL++ED
Subjt:  RRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTED

Query:  SPNGVAVNSDEVE
        +PNG A+++DE+E
Subjt:  SPNGVAVNSDEVE

AT3G02900.1 unknown protein2.5e-1231.58Show/hide
Query:  SPIFLPGSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKL
        +PI   G +   A + F ++  + +L           S     LSV A Y  G +   +  F+ GF+LG  + GTL  ++APQI +++   +     +  
Subjt:  SPIFLPGSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKL

Query:  PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEV
            YDE   LE+ R++L +KI QLNSAID+VSS+L+   S +    +S  V
Subjt:  PKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEV

AT3G02900.2 unknown protein9.7e-1237.61Show/hide
Query:  LSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPN
        LSV A Y  G +   +  F+ GF+LG  + GTL  ++APQI +++   +     +      YDE   LE+ R++L +KI QLNSAID+VSS+L+   S +
Subjt:  LSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPN

Query:  GVAVNSDEV
            +S  V
Subjt:  GVAVNSDEV

AT5G16660.1 unknown protein3.2e-1545.08Show/hide
Query:  KLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQ
        K S   R  SV A Y DG RS S+G FI GF+LGG + G +  ++APQI +++   + +    K  +  Y +E  LEKTR+ L +KI QLNSAID VSS+
Subjt:  KLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQ

Query:  LRTED---SPNGVAVNSD-EVE
        LR  +   S   V V +D EVE
Subjt:  LRTED---SPNGVAVNSD-EVE

AT5G16660.2 unknown protein5.1e-1344.26Show/hide
Query:  KLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQ
        K S   R  SV A   DG RS S+G FI GF+LGG + G +  ++APQI +++   + +    K  +  Y +E  LEKTR+ L +KI QLNSAID VSS+
Subjt:  KLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQ

Query:  LRTED---SPNGVAVNSD-EVE
        LR  +   S   V V +D EVE
Subjt:  LRTED---SPNGVAVNSD-EVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGTACCCATTAATTGTATTAGTCTAAGTTTACTCTCGCCAATTTTCCTGCCAGGATCAAATCTGAAAACTGCTGATAAACGATTTGGGAGTGTCTCCCCTACCCG
CTCGTTACTCAATCCTGGTTGGGTGGGAAAGGCCAAGCTTTCTACATTTAGGCGGCCACTTTCAGTTCAAGCTGCATATAGTGATGGTGGACGGTCAAGCAGTGCAGGCA
TTTTTATTGGAGGTTTTGTATTGGGAGGGCTCATAGTTGGTACGCTTGGCTGTGTATATGCCCCTCAGATTAGCAAGGCACTTGCTGGAACAGACCGAAAAGATTTGATG
AGGAAACTTCCCAAGTTCATATATGATGAAGAAAAAGCCTTAGAGAAAACGAGAAAAGTGCTGGCACAGAAGATTGAACAGTTGAACTCTGCCATTGATGAGGTTTCTTC
TCAGCTCCGCACAGAGGATTCCCCAAATGGAGTGGCCGTAAACTCTGATGAAGTTGAACCTGCCATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATGTACCCATTAATTGTATTAGTCTAAGTTTACTCTCGCCAATTTTCCTGCCAGGATCAAATCTGAAAACTGCTGATAAACGATTTGGGAGTGTCTCCCCTACCCG
CTCGTTACTCAATCCTGGTTGGGTGGGAAAGGCCAAGCTTTCTACATTTAGGCGGCCACTTTCAGTTCAAGCTGCATATAGTGATGGTGGACGGTCAAGCAGTGCAGGCA
TTTTTATTGGAGGTTTTGTATTGGGAGGGCTCATAGTTGGTACGCTTGGCTGTGTATATGCCCCTCAGATTAGCAAGGCACTTGCTGGAACAGACCGAAAAGATTTGATG
AGGAAACTTCCCAAGTTCATATATGATGAAGAAAAAGCCTTAGAGAAAACGAGAAAAGTGCTGGCACAGAAGATTGAACAGTTGAACTCTGCCATTGATGAGGTTTCTTC
TCAGCTCCGCACAGAGGATTCCCCAAATGGAGTGGCCGTAAACTCTGATGAAGTTGAACCTGCCATTTGA
Protein sequenceShow/hide protein sequence
MYVPINCISLSLLSPIFLPGSNLKTADKRFGSVSPTRSLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLM
RKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI