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Carg21398 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21398
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTransmembrane protein
Genome locationCarg_Chr13:6363563..6364027
RNA-Seq ExpressionCarg21398
SyntenyCarg21398
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583852.1 hypothetical protein SDJN03_19784, partial [Cucurbita argyrosperma subsp. sororia]2.4e-75100Show/hide
Query:  MVISSRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGD
        MVISSRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGD
Subjt:  MVISSRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGD

Query:  HIRGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNRSSSSLSVSETTNIIANK
        HIRGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNRSSSSLSVSETTNIIANK
Subjt:  HIRGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNRSSSSLSVSETTNIIANK

XP_022927447.1 uncharacterized protein LOC111434271 [Cucurbita moschata]3.1e-7599.35Show/hide
Query:  MVISSRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGD
        MVISSRIAAVAA+YCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGD
Subjt:  MVISSRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGD

Query:  HIRGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNRSSSSLSVSETTNIIANK
        HIRGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNRSSSSLSVSETTNIIANK
Subjt:  HIRGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNRSSSSLSVSETTNIIANK

XP_023000949.1 uncharacterized protein LOC111495232 [Cucurbita maxima]3.5e-7195.42Show/hide
Query:  VISSRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGDH
        +ISS IAA AA+YCS+AVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRS AAADGG GDH
Subjt:  VISSRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGDH

Query:  IRGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNRSSSSLSVSETTNIIANK
        IRGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNRSSSSLSVSETTNIIANK
Subjt:  IRGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNRSSSSLSVSETTNIIANK

XP_023519911.1 uncharacterized protein LOC111783236 [Cucurbita pepo subsp. pepo]2.0e-7498.05Show/hide
Query:  MVISSRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGD
        MVISSRIAAVAA+YCS+AVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAA DGGGGD
Subjt:  MVISSRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGD

Query:  HIRGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNRSSSSLSVSETTNIIANK
        HIRGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNRSSSSLSVSETTNIIANK
Subjt:  HIRGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNRSSSSLSVSETTNIIANK

XP_038895122.1 uncharacterized protein LOC120083432 [Benincasa hispida]5.4e-6487.5Show/hide
Query:  ISSRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGDHI
        I S+I + AAV+ S+AVI LAG SNARDLRPSEHGLEYQNPGA+ENSSP MQSFFKGNSWSSSDVALPKAMNTSLP QWWNRSHR+RSGAAADGGGGDHI
Subjt:  ISSRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGDHI

Query:  RGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNRSSSSLSVSETTNIIANK
        RGALLVASLVCG+IG+SLLIASAFIY FKFRKQ+RSSSSLSVSETTNII NK
Subjt:  RGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNRSSSSLSVSETTNIIANK

TrEMBL top hitse value%identityAlignment
A0A1S3BC63 uncharacterized protein LOC1034883249.4e-5478.06Show/hide
Query:  SRIAAVAAVYCSVA--VIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGDHI
        S I + A +Y S+A  ++ LA  SNARDLRPSEHGL+YQNP AI+NSSP MQSFFKGNSWS+SDVALPKAMNTSLP QWWNRSHR+RSGA+A   GGDHI
Subjt:  SRIAAVAAVYCSVA--VIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGDHI

Query:  RGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNR---SSSSLSVSETTNIIANK
        RGALLVASLVCG+IGVSLL+ASAFIY FKFRKQ+R   SSSSLS SETTNIIANK
Subjt:  RGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNR---SSSSLSVSETTNIIANK

A0A5D3C2L6 Uncharacterized protein9.4e-5478.06Show/hide
Query:  SRIAAVAAVYCSVA--VIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGDHI
        S I + A +Y S+A  ++ LA  SNARDLRPSEHGL+YQNP AI+NSSP MQSFFKGNSWS+SDVALPKAMNTSLP QWWNRSHR+RSGA+A   GGDHI
Subjt:  SRIAAVAAVYCSVA--VIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGDHI

Query:  RGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNR---SSSSLSVSETTNIIANK
        RGALLVASLVCG+IGVSLL+ASAFIY FKFRKQ+R   SSSSLS SETTNIIANK
Subjt:  RGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNR---SSSSLSVSETTNIIANK

A0A6J1EH69 uncharacterized protein LOC1114342711.5e-7599.35Show/hide
Query:  MVISSRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGD
        MVISSRIAAVAA+YCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGD
Subjt:  MVISSRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGD

Query:  HIRGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNRSSSSLSVSETTNIIANK
        HIRGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNRSSSSLSVSETTNIIANK
Subjt:  HIRGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNRSSSSLSVSETTNIIANK

A0A6J1GT11 uncharacterized protein LOC1114567133.9e-5275.48Show/hide
Query:  MVISSRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGD
        M I S+IAA AAVYC +A IF  G SNARDLRPSEHGLEYQNPGA  NSS +MQSFF+GNSWSSS+V LPKA+NTSLPSQWWNRSH +RSGA     GGD
Subjt:  MVISSRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGD

Query:  HIRGALLVASLVCGVIGVSLLIASAFIYVFKFRKQN-RSSSSLSVSETTNIIANK
        HIRGAL+V SLVCG+IG SLLIASAFIY FKF+KQN RS SSLS SET +II +K
Subjt:  HIRGALLVASLVCGVIGVSLLIASAFIYVFKFRKQN-RSSSSLSVSETTNIIANK

A0A6J1KLE3 uncharacterized protein LOC1114952321.7e-7195.42Show/hide
Query:  VISSRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGDH
        +ISS IAA AA+YCS+AVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRS AAADGG GDH
Subjt:  VISSRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGDH

Query:  IRGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNRSSSSLSVSETTNIIANK
        IRGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNRSSSSLSVSETTNIIANK
Subjt:  IRGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNRSSSSLSVSETTNIIANK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G30515.1 unknown protein1.3e-0738.6Show/hide
Query:  NARDLRPSEHGLE-YQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGDHIRGALLVASLVCGVIGVSLLIASA
        NAR+LRPS+HGLE Y  PG     S +M SFF     SS+D+    + ++S+         +  S    D    +H+   L+V SLVCG+ GV+L++ASA
Subjt:  NARDLRPSEHGLE-YQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGDHIRGALLVASLVCGVIGVSLLIASA

Query:  FIYVFKFRKQNRSS
         IY   + K   SS
Subjt:  FIYVFKFRKQNRSS

AT4G21740.1 unknown protein1.1e-1139.39Show/hide
Query:  VIFLAGGSNARDLRPSEHGLEYQ--NPGAIENSSPDMQSFFKGNSWSSS-----DVALPK--AMNTSLPSQWWNRSHRDRSGAAADGGGGDHI-RGALLV
        ++   G S A +LRPS+HGL+YQ  +P    +S P     F G+S SSS        LPK  A +      WW      R GA   G   DH+ R   L 
Subjt:  VIFLAGGSNARDLRPSEHGLEYQ--NPGAIENSSPDMQSFFKGNSWSSS-----DVALPK--AMNTSLPSQWWNRSHRDRSGAAADGGGGDHI-RGALLV

Query:  ASLVCGVIGVSLLIASAFIYVFKFRKQNRSSS
        AS++CGV GV+LL+    IY F++RK N S+S
Subjt:  ASLVCGVIGVSLLIASAFIYVFKFRKQNRSSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATTTCCTCGCGGATTGCTGCAGTCGCCGCTGTCTATTGCTCGGTCGCCGTCATTTTTCTTGCCGGAGGCTCAAATGCTAGGGACTTGCGTCCATCGGAGCACGG
CTTGGAGTACCAAAACCCTGGCGCTATTGAAAACTCCTCGCCGGATATGCAATCTTTCTTCAAAGGAAACTCCTGGTCTTCTTCCGATGTCGCGCTTCCGAAGGCGATGA
ACACTAGCCTGCCGTCGCAGTGGTGGAATCGTAGCCACCGTGACCGCTCTGGAGCCGCTGCCGATGGAGGCGGCGGAGACCACATTCGTGGCGCATTGCTTGTGGCGAGT
CTGGTATGTGGAGTTATAGGCGTTTCTTTGCTGATTGCTTCTGCTTTTATTTACGTCTTCAAGTTCAGGAAACAGAATAGATCGTCGTCCTCGCTCTCTGTCTCTGAAAC
TACTAACATTATTGCTAACAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGATTTCCTCGCGGATTGCTGCAGTCGCCGCTGTCTATTGCTCGGTCGCCGTCATTTTTCTTGCCGGAGGCTCAAATGCTAGGGACTTGCGTCCATCGGAGCACGG
CTTGGAGTACCAAAACCCTGGCGCTATTGAAAACTCCTCGCCGGATATGCAATCTTTCTTCAAAGGAAACTCCTGGTCTTCTTCCGATGTCGCGCTTCCGAAGGCGATGA
ACACTAGCCTGCCGTCGCAGTGGTGGAATCGTAGCCACCGTGACCGCTCTGGAGCCGCTGCCGATGGAGGCGGCGGAGACCACATTCGTGGCGCATTGCTTGTGGCGAGT
CTGGTATGTGGAGTTATAGGCGTTTCTTTGCTGATTGCTTCTGCTTTTATTTACGTCTTCAAGTTCAGGAAACAGAATAGATCGTCGTCCTCGCTCTCTGTCTCTGAAAC
TACTAACATTATTGCTAACAAGTGA
Protein sequenceShow/hide protein sequence
MVISSRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGDHIRGALLVAS
LVCGVIGVSLLIASAFIYVFKFRKQNRSSSSLSVSETTNIIANK