; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg21406 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21406
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCLIP-associated protein
Genome locationCarg_Chr13:6303149..6304300
RNA-Seq ExpressionCarg21406
SyntenyCarg21406
Gene Ontology termsGO:0005737 - cytoplasm (cellular component)
InterPro domainsIPR011989 - Armadillo-like helical


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583846.1 putative 3-hydroxyisobutyrate dehydrogenase, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.4e-21100Show/hide
Query:  LTRVLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHVLTDDRFLFHI
        LTRVLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHVLTDDRFLFHI
Subjt:  LTRVLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHVLTDDRFLFHI
KAG7019465.1 CLIP-associated protein, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-37100Show/hide
Query:  MTSNQFVPYSQSFTPPQTDLFHSYTRLTRVLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHVLTDDRFLFHI
        MTSNQFVPYSQSFTPPQTDLFHSYTRLTRVLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHVLTDDRFLFHI
Subjt:  MTSNQFVPYSQSFTPPQTDLFHSYTRLTRVLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHVLTDDRFLFHI
XP_022991555.1 CLIP-associated protein-like isoform X2 [Cucurbita maxima]1.7e-0881.4Show/hide
Query:  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV
        VLSGEHL LH +ALVPAVVERLGDAKQPVREAARRLLL    +
Subjt:  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV
XP_023547474.1 CLIP-associated protein-like isoform X2 [Cucurbita pepo subsp. pepo]1.7e-0881.4Show/hide
Query:  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV
        VLSGEHL LH +ALVPAVVERLGDAKQPVREAARRLLL    +
Subjt:  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV
XP_038899196.1 CLIP-associated protein isoform X2 [Benincasa hispida]1.7e-0881.4Show/hide
Query:  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV
        VLSGEHL LH +ALVPAVVERLGDAKQPVREAARRLLL    +
Subjt:  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV
TrEMBL top hitse value%identityAlignment
A0A6J1DFP8 CLIP-associated protein8.4e-0981.4Show/hide
Query:  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV
        VLSGEHL LH +ALVPAVVERLGDAKQPVREAARRLLL    +
Subjt:  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV
A0A6J1GN88 CLIP-associated protein-like isoform X18.4e-0981.4Show/hide
Query:  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV
        VLSGEHL LH +ALVPAVVERLGDAKQPVREAARRLLL    +
Subjt:  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV
A0A6J1GNC3 CLIP-associated protein-like isoform X28.4e-0981.4Show/hide
Query:  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV
        VLSGEHL LH +ALVPAVVERLGDAKQPVREAARRLLL    +
Subjt:  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV
A0A6J1JT99 CLIP-associated protein-like isoform X28.4e-0981.4Show/hide
Query:  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV
        VLSGEHL LH +ALVPAVVERLGDAKQPVREAARRLLL    +
Subjt:  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV
A0A6J1JV62 CLIP-associated protein-like isoform X18.4e-0981.4Show/hide
Query:  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV
        VLSGEHL LH +ALVPAVVERLGDAKQPVREAARRLLL    +
Subjt:  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV
SwissProt top hitse value%identityAlignment
Q8RWY6 CLIP-associated protein4.3e-1074.42Show/hide
Query:  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV
        VL+GEHL LH++ALVPAVVERLGD+KQPVR+AARRLL     V
Subjt:  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV
Arabidopsis top hitse value%identityAlignment
AT2G20190.1 CLIP-associated protein3.0e-1174.42Show/hide
Query:  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV
        VL+GEHL LH++ALVPAVVERLGD+KQPVR+AARRLL     V
Subjt:  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCAAATCAATTCGTTCCTTACTCACAAAGCTTCACGCCTCCACAAACAGACCTCTTCCATTCATACACACGGCTTACCCGGGTGCTCTCCGGCGAGCATCTCTT
GCTGCATGTCAGTGCCCTTGTCCCTGCCGTCGTTGAGCGGCTGGGCGATGCCAAGCAGCCTGTCAGAGAAGCCGCCAGGAGGCTCTTGCTCGAGTGTTTTCACGTTTTAA
CCGATGATCGTTTCTTGTTCCACATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTTCAAATCAATTCGTTCCTTACTCACAAAGCTTCACGCCTCCACAAACAGACCTCTTCCATTCATACACACGGCTTACCCGGGTGCTCTCCGGCGAGCATCTCTT
GCTGCATGTCAGTGCCCTTGTCCCTGCCGTCGTTGAGCGGCTGGGCGATGCCAAGCAGCCTGTCAGAGAAGCCGCCAGGAGGCTCTTGCTCGAGTGTTTTCACGTTTTAA
CCGATGATCGTTTCTTGTTCCACATTTAA
Protein sequenceShow/hide protein sequence
MTSNQFVPYSQSFTPPQTDLFHSYTRLTRVLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHVLTDDRFLFHI