CuGenDBv2

Gene ID	Carg21452
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ribonuclease H2 subunit C
Genome location	Carg_Chr13:5941544..5944391
RNA-Seq Expression	Carg21452
Synteny	Carg21452
Gene Ontology terms	GO:0006401 - RNA catabolic process (biological process) GO:0032299 - ribonuclease H2 complex (cellular component)
InterPro domains	IPR013924 - Ribonuclease H2, subunit C

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6583796.1 Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]

2.4e-86

98.8

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Query:  MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG--VDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS
        MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG  VDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS
Subjt:  MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG--VDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS

Query:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
        EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
Subjt:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS

KAG7019419.1 Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. argyrosperma]

7.5e-88

100

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Query:  MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEE
        MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEE
Subjt:  MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEE

Query:  SQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
        SQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
Subjt:  SQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS

XP_022927160.1 uncharacterized protein C12B10.15c [Cucurbita moschata]

1.2e-85

98.19

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Query:  MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG--VDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS
        MDSE ERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG  VDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS
Subjt:  MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG--VDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS

Query:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
        EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
Subjt:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS

XP_023001622.1 uncharacterized protein C12B10.15c [Cucurbita maxima]

4.0e-81

94.58

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Query:  MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG--VDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS
        MDSE ERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG  VDGLSV+NAYFRGRKLQGATISLPEGY GYVIGRKS  KRKAS
Subjt:  MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG--VDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS

Query:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
        EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLA AS ALKNMS
Subjt:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS

XP_023519278.1 uncharacterized protein C12B10.15c [Cucurbita pepo subsp. pepo]

2.5e-83

95.78

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Query:  MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG--VDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS
        MDSE+ERKREVIVDFDFGSDSG VDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG  VDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS
Subjt:  MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG--VDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS

Query:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
        EESQDSSSWQVKAKFENITYWNHDTLPTQDDTF RSFHWLTVAQALHKP TAEDLAAAS ALKNMS
Subjt:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C9A8 uncharacterized protein C12B10.15c

4.2e-68

77.38

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Query:  MDSENERKREVIV--DFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG--VDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRK
        M+++N RK E  V  DFDFGSD  A+DLSGK+HQLPC +KFDGPC VS YFKPKSTG  VDGL+VE AYFRGRKLQGATISLPEGYSGYV+G+KS GK K
Subjt:  MDSENERKREVIV--DFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG--VDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRK

Query:  ASEESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
        +S++  DSS WQVKAKF+NITYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS AL N+S
Subjt:  ASEESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS

A0A5A7TIT8 Ribonuclease H2 subunit C isoform X2

4.2e-68

77.38

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Query:  MDSENERKREVIV--DFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG--VDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRK
        M+++N RK E  V  DFDFGSD  A+DLSGK+HQLPC +KFDGPC VS YFKPKSTG  VDGL+VE AYFRGRKLQGATISLPEGYSGYV+G+KS GK K
Subjt:  MDSENERKREVIV--DFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG--VDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRK

Query:  ASEESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
        +S++  DSS WQVKAKF+NITYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS AL N+S
Subjt:  ASEESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS

A0A6J1CLH6 ribonuclease H2 subunit C

1.9e-68

81.33

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Query:  MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG--VDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS
        MD+ENER+REVIVD D G DS AVDLSGKVHQLPC VK DGPCSVS YFKPK TG  VDGLSVE AYFRGRKLQGATISLPEGYSG+V+GRK  GKRKAS
Subjt:  MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG--VDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS

Query:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
        E+SQD  SW+VKAKF NITYWNH TLP+QDD F+RSFHWLTVAQALH+PVTAEDLA+AS A K+MS
Subjt:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS

A0A6J1EN41 uncharacterized protein C12B10.15c

5.8e-86

98.19

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Query:  MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG--VDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS
        MDSE ERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG  VDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS
Subjt:  MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG--VDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS

Query:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
        EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
Subjt:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS

A0A6J1KH29 uncharacterized protein C12B10.15c

1.9e-81

94.58

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Query:  MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG--VDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS
        MDSE ERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG  VDGLSV+NAYFRGRKLQGATISLPEGY GYVIGRKS  KRKAS
Subjt:  MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG--VDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS

Query:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
        EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLA AS ALKNMS
Subjt:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS

SwissProt top hits

e value

%identity

Alignment

Q10448 Uncharacterized protein C12B10.15c

2.1e-08

30.83

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Query:  KVHQLPCAVKFDGPCSVSQYFKPK-STGVDGLSVENAYFRGRKLQGATISLPEGYSGYVI----GRKSHGKRKASEESQDSSSWQVKAKFENITYWNHDT
        K   LPC + +DGP  V +YF  K     +  S      RGR+L G  + LPE Y+G V+    G ++    + SE+    S+W + + FE +  WN D 
Subjt:  KVHQLPCAVKFDGPCSVSQYFKPK-STGVDGLSVENAYFRGRKLQGATISLPEGYSGYVI----GRKSHGKRKASEESQDSSSWQVKAKFENITYWNHDT

Query:  L-PTQDDTFQRS-FHWLTVA
        +  ++ D ++R    W+  A
Subjt:  L-PTQDDTFQRS-FHWLTVA

Q8TDP1 Ribonuclease H2 subunit C

3.2e-09

31.62

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Query:  VHQLPCAVKFDGPCSVSQYFKPK-STGVDGLSVENAYFRGRKLQGATISLPEGYSGYVI----GRKSHGK----RKASEESQDSSSWQ--------VKAK
        +H LPC V  DGP  V ++F P    G +GL V    FRGR L+G  +++P G  GYV+     + S GK    R +  + Q+    +          A 
Subjt:  VHQLPCAVKFDGPCSVSQYFKPK-STGVDGLSVENAYFRGRKLQGATISLPEGYSGYVI----GRKSHGK----RKASEESQDSSSWQ--------VKAK

Query:  FENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPV
        F   T W  +T+P  D   + +  W ++A A+H  V
Subjt:  FENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPV

Arabidopsis top hits

e value

%identity

Alignment

AT2G39440.1 CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

6.6e-50

60.51

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Query:  VDFDFGSDSGA-VDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGV--DGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKS----HGKRKASEESQDSS
        +DF   +D  + VDLS +VHQLPC ++FDGP  VS YFKPKS+ V  DG+  E A+FRGRKLQGATISLP GYSG+V+ + S    +GKRKAS  ++D+ 
Subjt:  VDFDFGSDSGA-VDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGV--DGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKS----HGKRKASEESQDSS

Query:  SWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKN
         W+VKAKF N+TYWNHD+LP++DDTF RSFHW ++A+ALHKPV  EDL A S   KN
Subjt:  SWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKN

Sequences

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CDS sequence

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ATGGATTCTGAAAACGAGAGGAAAAGGGAAGTAATCGTGGATTTTGATTTTGGGAGCGATTCTGGAGCTGTCGATCTCAGCGGTAAAGTCCATCAGCTTCCGTGTGCCGT
TAAATTCGATGGTCCTTGCTCTGTTTCTCAGTATTTTAAACCTAAATCCACTGGGGTTGATGGTTTGAGCGTTGAGAATGCTTATTTCAGAGGAAGAAAGTTGCAGGGAG
CTACCATTTCCCTTCCGGAAGGCTACTCTGGCTATGTGATAGGGAGGAAAAGTCATGGAAAGAGAAAAGCTTCCGAAGAGTCTCAGGACTCAAGCTCTTGGCAAGTGAAG
GCCAAATTTGAGAACATTACATATTGGAACCATGACACCCTACCAACACAAGATGATACGTTCCAGCGTTCTTTTCACTGGCTGACCGTTGCACAAGCATTGCACAAACC
GGTAACAGCAGAAGACTTGGCAGCTGCATCTATTGCTCTCAAGAACATGAGTTGA

mRNA sequence

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Protein sequence

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MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVK
AKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS

Carg21452 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome