; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg21497 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21497
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein LOL2
Genome locationCarg_Chr13:7300809..7304243
RNA-Seq ExpressionCarg21497
SyntenyCarg21497
Gene Ontology termsGO:0009617 - response to bacterium (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146601.1 protein LOL2 isoform X2 [Cucumis sativus]2.7e-6492.37Show/hide
Query:  MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        M++HEIEKDEDDGPPPGWEPITP LP PPP  LSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ
        CT VTEIGVHNRRPPWSV QGQAAPPTN VQ
Subjt:  CTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ

XP_008442544.1 PREDICTED: protein LOL2 isoform X4 [Cucumis melo]4.3e-6290.84Show/hide
Query:  MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        M++HEIEKDEDDGPPPGWEPITP LP PP   LS DMAQMVCGTCRRLLKYLKGARYVQCS CSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ
        CT VTEIGVHNRRPPWSVQQGQAAPPTN VQ
Subjt:  CTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ

XP_011653178.1 protein LOL2 isoform X1 [Cucumis sativus]6.7e-6391.67Show/hide
Query:  MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSS-DMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
        M++HEIEKDEDDGPPPGWEPITP LP PPP  LSS DMAQMVCGTCRRLLKYLKGARYVQCSCCSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
Subjt:  MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSS-DMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS

Query:  SCTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ
        SCT VTEIGVHNRRPPWSV QGQAAPPTN VQ
Subjt:  SCTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ

XP_022927005.1 protein LOL2 [Cucurbita moschata]5.1e-71100Show/hide
Query:  MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ
        CTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ
Subjt:  CTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ

XP_023001758.1 protein LOL2 [Cucurbita maxima]4.3e-7099.24Show/hide
Query:  MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        MEIHEIEKDEDDGPPPGWEPITPPLPQ PPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ
        CTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ
Subjt:  CTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ

TrEMBL top hitse value%identityAlignment
A0A0A0LXE3 Uncharacterized protein1.3e-6492.37Show/hide
Query:  MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        M++HEIEKDEDDGPPPGWEPITP LP PPP  LSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ
        CT VTEIGVHNRRPPWSV QGQAAPPTN VQ
Subjt:  CTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ

A0A1S3B6Q2 protein LOL2 isoform X42.1e-6290.84Show/hide
Query:  MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        M++HEIEKDEDDGPPPGWEPITP LP PP   LS DMAQMVCGTCRRLLKYLKGARYVQCS CSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ
        CT VTEIGVHNRRPPWSVQQGQAAPPTN VQ
Subjt:  CTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ

A0A5A7UQS3 Protein LOL2 isoform X42.1e-6290.84Show/hide
Query:  MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        M++HEIEKDEDDGPPPGWEPITP LP PP   LS DMAQMVCGTCRRLLKYLKGARYVQCS CSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ
        CT VTEIGVHNRRPPWSVQQGQAAPPTN VQ
Subjt:  CTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ

A0A6J1EMN3 protein LOL22.5e-71100Show/hide
Query:  MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ
        CTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ
Subjt:  CTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ

A0A6J1KRG9 protein LOL22.1e-7099.24Show/hide
Query:  MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        MEIHEIEKDEDDGPPPGWEPITPPLPQ PPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ
        CTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ
Subjt:  CTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ

SwissProt top hitse value%identityAlignment
O65426 Protein LOL21.2e-3356.35Show/hide
Query:  EIEKDEDDGPPPGWEPITPPLP--------QPPPQPLS-SDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASS
        E E++E++GPPPGWE    P P         P P  +   + AQMVCG+CRRLL YL+G+++V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +
Subjt:  EIEKDEDDGPPPGWEPITPPLP--------QPPPQPLS-SDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASS

Query:  VRCSSCTCVTEIGVHNRRPPWSVQQG
        VRCSSC  VT+I  +N+RPPWS QQG
Subjt:  VRCSSCTCVTEIGVHNRRPPWSVQQG

P94077 Protein LSD11.2e-1943.75Show/hide
Query:  PPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQ
        PP P   DMA ++CG CR +L Y +GA  V+CSCC T N V           + +V Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P    
Subjt:  PPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQ

Query:  Q--GQAAPPTNS
        +  G A PP+ S
Subjt:  Q--GQAAPPTNS

Q0J7V9 Protein LSD19.5e-2055.7Show/hide
Query:  PQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIG
        P P  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  +EA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIG

Q704V3 Protein LOL53.3e-2861.22Show/hide
Query:  PLPQPPPQP-LSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ
        PL  PPP P L+ ++ QMVCG+CR LL Y +GA YV C+CC T+NYVLEAHEVG+V CG CA LLMYP+GA +V+CS C  VTEIG  N R   S++Q
Subjt:  PLPQPPPQP-LSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ

Q93ZB1 Protein LOL11.9e-2056.79Show/hide
Query:  PPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIG
        PPP    ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIG

Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 11.4e-2156.79Show/hide
Query:  PPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIG
        PPP    ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIG

AT1G32540.2 lsd one like 11.4e-2156.79Show/hide
Query:  PPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIG
        PPP    ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIG

AT1G32540.3 lsd one like 11.4e-2156.79Show/hide
Query:  PPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIG
        PPP    ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIG

AT4G20380.2 LSD1 zinc finger family protein8.8e-2143.75Show/hide
Query:  PPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQ
        PP P   DMA ++CG CR +L Y +GA  V+CSCC T N V           + +V Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P    
Subjt:  PPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQ

Query:  Q--GQAAPPTNS
        +  G A PP+ S
Subjt:  Q--GQAAPPTNS

AT4G21610.1 lsd one like 28.2e-3556.35Show/hide
Query:  EIEKDEDDGPPPGWEPITPPLP--------QPPPQPLS-SDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASS
        E E++E++GPPPGWE    P P         P P  +   + AQMVCG+CRRLL YL+G+++V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +
Subjt:  EIEKDEDDGPPPGWEPITPPLP--------QPPPQPLS-SDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASS

Query:  VRCSSCTCVTEIGVHNRRPPWSVQQG
        VRCSSC  VT+I  +N+RPPWS QQG
Subjt:  VRCSSCTCVTEIGVHNRRPPWSVQQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATCCATGAAATCGAGAAGGACGAAGATGACGGACCTCCTCCTGGATGGGAACCCATCACCCCACCGTTGCCGCAACCGCCGCCACAGCCACTTTCTTCTGATAT
GGCCCAAATGGTTTGTGGTACCTGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCTAGATATGTTCAGTGTTCTTGCTGTTCAACAGTCAACTATGTCCTAGAAGCGCACG
AAGTTGGACAAGTGAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCGTATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACTTGTGTGACAGAAATTGGGGTGCAT
AACAGACGCCCACCGTGGTCTGTTCAGCAGGGACAAGCAGCCCCTCCTACAAACTCTGTGCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAATCCATGAAATCGAGAAGGACGAAGATGACGGACCTCCTCCTGGATGGGAACCCATCACCCCACCGTTGCCGCAACCGCCGCCACAGCCACTTTCTTCTGATAT
GGCCCAAATGGTTTGTGGTACCTGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCTAGATATGTTCAGTGTTCTTGCTGTTCAACAGTCAACTATGTCCTAGAAGCGCACG
AAGTTGGACAAGTGAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCGTATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACTTGTGTGACAGAAATTGGGGTGCAT
AACAGACGCCCACCGTGGTCTGTTCAGCAGGGACAAGCAGCCCCTCCTACAAACTCTGTGCAGTAGAGTCTGTTCATGTATACTTCTGCGTAGGAAAAGATGTGACATTT
TGTGAAGTTTTCTTTTCCGTTGCAGCCTTAATCAGCACACAGAGAAGGAGATCAACATTATCATCACAGGCACTTTTATTTCTTTATTGAAAGAAACATAGGAACTGACC
TTCCCAACTTCTAACGTGTTTTTATCTCAAGTTTGCCTTGTGACTTGACTTCCTGCTTATATTCATTTTCTATGCTGCAACCTTTGAGATGTTCTTCATTGTAAATGATT
ATCTTACTAAGTTGAAGCAGCATTGAGGACTAAATTTTTTCTAAATTCTACAATTTTGGATTTTCCTTAGCCGCAGGGTTTGGTTTTAATGATCGTTAAGTCAGGGACAA
GTGTACTTGACTCGATCAGTGATTTGTTTGGCACATAACTGAAATAAATTTGCTTGGTAGATGCAAGGTAGGACAATAGTGAACTTTATGAAAGTCAAATACAACTTCTC
ATAGTA
Protein sequenceShow/hide protein sequence
MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVH
NRRPPWSVQQGQAAPPTNSVQ