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Carg21515 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21515
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTropomyosin
Genome locationCarg_Chr13:7202957..7204282
RNA-Seq ExpressionCarg21515
SyntenyCarg21515
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583978.1 hypothetical protein SDJN03_19910, partial [Cucurbita argyrosperma subsp. sororia]2.0e-6488.41Show/hide
Query:  MAICPFKILYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMKKMSKIII
        MAICPF ILYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIE MSHKIQYLESALSDMK       
Subjt:  MAICPFKILYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMKKMSKIII

Query:  KTDISLVDMQRTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKK
                  RTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKK
Subjt:  KTDISLVDMQRTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKK

KAG7019602.1 hypothetical protein SDJN02_18565 [Cucurbita argyrosperma subsp. argyrosperma]9.3e-78100Show/hide
Query:  MAICPFKILYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMKKMSKIII
        MAICPFKILYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMKKMSKIII
Subjt:  MAICPFKILYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMKKMSKIII

Query:  KTDISLVDMQRTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKKV
        KTDISLVDMQRTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKKV
Subjt:  KTDISLVDMQRTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKKV

XP_022927215.1 uncharacterized protein LOC111434131 [Cucurbita moschata]1.0e-6387.8Show/hide
Query:  MAICPFKILYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMKKMSKIII
        MAICPFKILYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVE KLRISHLESVLEES QNLTEKRNELEAQEKLIEAMSHKIQYLESALSD+K       
Subjt:  MAICPFKILYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMKKMSKIII

Query:  KTDISLVDMQRTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKK
                  RTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKK
Subjt:  KTDISLVDMQRTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKK

XP_023001737.1 uncharacterized protein LOC111495786 [Cucurbita maxima]4.3e-5982.93Show/hide
Query:  MAICPFKILYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMKKMSKIII
        MAICP KILYLLPA+FL L AVCEIASPGRSSNHGLIDE +E KLRISHLESVLEES QNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMK       
Subjt:  MAICPFKILYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMKKMSKIII

Query:  KTDISLVDMQRTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKK
                  RTTSSDDER AALEDEVRRLWASSRKNNFEIH LKAKVQEAE+KLEEVTSQVKK
Subjt:  KTDISLVDMQRTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKK

XP_023520319.1 uncharacterized protein LOC111783633 isoform X1 [Cucurbita pepo subsp. pepo]6.5e-6387.2Show/hide
Query:  MAICPFKILYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMKKMSKIII
        MAICPFKILYLLPAIFLPL AVCEIASPGRSSNHGLIDELVE KLRISHLESVLEES QNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMK       
Subjt:  MAICPFKILYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMKKMSKIII

Query:  KTDISLVDMQRTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKK
                  RTTSSDDER AALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKK
Subjt:  KTDISLVDMQRTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKK

TrEMBL top hitse value%identityAlignment
A0A0A0LSE6 Uncharacterized protein7.0e-4770.3Show/hide
Query:  MAICPFKI-LYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMKKMSKII
        MA+C  KI LYL PA  LPL AVCEI SPG+S N  LI EL+ IKLRISHLESVLEES QNLTEK NEL+AQEKLIE +SHKIQYLESA+SDMK      
Subjt:  MAICPFKI-LYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMKKMSKII

Query:  IKTDISLVDMQRTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKK
                   R  SSDDER A LEDEVRRLW + RKNNF+IH+LKAKVQEAEEKLEEVTSQV+K
Subjt:  IKTDISLVDMQRTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKK

A0A5A7UM81 Tropomyosin2.9e-4569.09Show/hide
Query:  MAICPFKI-LYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMKKMSKII
        MA+C  KI LYL PA  LP  AVCEI SPG+S N  LIDEL+ IKLRISHLESVLEES QNLTEK NEL+AQEKLIE MS KIQYLESA+SDMK      
Subjt:  MAICPFKI-LYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMKKMSKII

Query:  IKTDISLVDMQRTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKK
                   R  SSDDER A LEDEVR LW + RKNNF+IH+LKAKV+EAEEKLEEVTSQV+K
Subjt:  IKTDISLVDMQRTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKK

A0A5D3DRW2 Tropomyosin1.0e-4569.28Show/hide
Query:  MAICPFKI-LYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMKKMSKII
        MA+C  KI LYL PA  LP  AVCEI SPG+S N  LIDEL+ IKLRISHLESVLEES QNLTEK NEL+AQEKLIE MS KIQYLESA+SDMK      
Subjt:  MAICPFKI-LYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMKKMSKII

Query:  IKTDISLVDMQRTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKKV
                   R  SSDDER A LEDEVR LW + RKNNF+IH+LKAKV+EAEEKLEEVTSQV+KV
Subjt:  IKTDISLVDMQRTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKKV

A0A6J1ENA1 uncharacterized protein LOC1114341314.8e-6487.8Show/hide
Query:  MAICPFKILYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMKKMSKIII
        MAICPFKILYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVE KLRISHLESVLEES QNLTEKRNELEAQEKLIEAMSHKIQYLESALSD+K       
Subjt:  MAICPFKILYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMKKMSKIII

Query:  KTDISLVDMQRTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKK
                  RTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKK
Subjt:  KTDISLVDMQRTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKK

A0A6J1KHG7 uncharacterized protein LOC1114957862.1e-5982.93Show/hide
Query:  MAICPFKILYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMKKMSKIII
        MAICP KILYLLPA+FL L AVCEIASPGRSSNHGLIDE +E KLRISHLESVLEES QNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMK       
Subjt:  MAICPFKILYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMKKMSKIII

Query:  KTDISLVDMQRTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKK
                  RTTSSDDER AALEDEVRRLWASSRKNNFEIH LKAKVQEAE+KLEEVTSQVKK
Subjt:  KTDISLVDMQRTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G28410.1 FUNCTIONS IN: molecular_function unknown1.2e-1135.76Show/hide
Query:  IFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMKKMSKIIIKTDISLVDMQRTTS
        I  PL            SN  LI++L   KLRIS LE+VLE + Q L  K   L+ +EKLI+    +I  L+SA          I K+ + LV       
Subjt:  IFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMKKMSKIIIKTDISLVDMQRTTS

Query:  SDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKKV
           +R + LE+EV+ LWA+ R  NFE+H+L+ K +EA+ KL+    +V+++
Subjt:  SDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATTTGCCCATTTAAGATCTTGTATCTCCTTCCCGCCATATTCTTACCTCTTCTCGCCGTCTGTGAAATCGCCTCGCCCGGTCGATCAAGTAACCATGGGCTGAT
CGACGAATTGGTGGAAATCAAGCTCAGGATCTCTCACTTAGAATCCGTTCTGGAGGAAAGCAACCAAAATTTAACCGAGAAAAGAAATGAGCTCGAGGCGCAGGAAAAGC
TAATCGAGGCTATGTCCCATAAGATTCAATACTTGGAGTCTGCTCTATCTGATATGAAGAAAATGTCGAAGATCATCATTAAGACTGATATTAGTTTAGTTGATATGCAG
AGGACAACATCAAGTGATGATGAAAGGACTGCTGCTCTGGAGGATGAGGTACGACGTCTCTGGGCTTCATCGAGAAAGAACAACTTCGAAATTCATATTCTGAAAGCCAA
GGTACAGGAAGCTGAGGAAAAATTGGAAGAGGTTACTTCACAAGTTAAGAAGGTATAA
mRNA sequenceShow/hide mRNA sequence
TATGAACAGTTTCATCACAAACTAATAGTAATTGTATTTTTAGCTTTTTTCTTACAATAATTTATCTTAAATTGATGACGGCGAAGAAATGATTCACATGCGTGAGGGAG
TCTCGCGTTGCAGAAATTGCAGGCGGGTTTCTGGGTTGTGAACTCAGAAAGCTCTGCAAAAATGGCGATTTGCCCATTTAAGATCTTGTATCTCCTTCCCGCCATATTCT
TACCTCTTCTCGCCGTCTGTGAAATCGCCTCGCCCGGTCGATCAAGTAACCATGGGCTGATCGACGAATTGGTGGAAATCAAGCTCAGGATCTCTCACTTAGAATCCGTT
CTGGAGGAAAGCAACCAAAATTTAACCGAGAAAAGAAATGAGCTCGAGGCGCAGGAAAAGCTAATCGAGGCTATGTCCCATAAGATTCAATACTTGGAGTCTGCTCTATC
TGATATGAAGAAAATGTCGAAGATCATCATTAAGACTGATATTAGTTTAGTTGATATGCAGAGGACAACATCAAGTGATGATGAAAGGACTGCTGCTCTGGAGGATGAGG
TACGACGTCTCTGGGCTTCATCGAGAAAGAACAACTTCGAAATTCATATTCTGAAAGCCAAGGTACAGGAAGCTGAGGAAAAATTGGAAGAGGTTACTTCACAAGTTAAG
AAGGTATAAATTTCTGACCAGATTGCAACAGGTTTTTTGTTTTTCTAGCCGGC
Protein sequenceShow/hide protein sequence
MAICPFKILYLLPAIFLPLLAVCEIASPGRSSNHGLIDELVEIKLRISHLESVLEESNQNLTEKRNELEAQEKLIEAMSHKIQYLESALSDMKKMSKIIIKTDISLVDMQ
RTTSSDDERTAALEDEVRRLWASSRKNNFEIHILKAKVQEAEEKLEEVTSQVKKV