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Carg21524 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21524
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor PCF8-like
Genome locationCarg_Chr13:7157569..7158128
RNA-Seq ExpressionCarg21524
SyntenyCarg21524
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:2000032 - regulation of secondary shoot formation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR005333 - Transcription factor, TCP
IPR017887 - Transcription factor TCP subgroup


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583970.1 Transcription factor TCP10, partial [Cucurbita argyrosperma subsp. sororia]3.4e-5768.28Show/hide
Query:  MEERRLRSSAGSGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPLETEDGKRSFPSILLPFRRRLLLPNSWLTHL
        MEERRLRSSAGSGKVYTSKG RARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL    KSAIDVLSRPLETEDGKR                       
Subjt:  MEERRLRSSAGSGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPLETEDGKRSFPSILLPFRRRLLLPNSWLTHL

Query:  KISSKMFDYCFCFLENFLKLPEMKLCDSVTGQPLCFESNDNECHAGGILRHAATVFKSELCNNWVTILSNVGIATAKRQPPDDFQT
                                       QPLCFESNDNECHAGGILRHAATVFKSELCNNWVTILSNVGIATAKRQPPDDFQT
Subjt:  KISSKMFDYCFCFLENFLKLPEMKLCDSVTGQPLCFESNDNECHAGGILRHAATVFKSELCNNWVTILSNVGIATAKRQPPDDFQT

XP_008443015.1 PREDICTED: transcription factor TCP10-like [Cucumis melo]4.9e-1978.08Show/hide
Query:  RRLRSS--AGSGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPLETED
        RRL SS  AG+GKVYTSKGLRAR+LRLSAPTAI+FYD+QDRLG  RPTEAIDWL    K AID LSRPL+TED
Subjt:  RRLRSS--AGSGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPLETED

XP_011653401.1 transcription factor PCF8 [Cucumis sativus]2.2e-1969.77Show/hide
Query:  RRLRSS----AGSGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPLETEDGKRSFPSILLP
        RRL S+    AG GKVYTSKGLRAR+LRLSAPTAI+FYD+QDRLG  RPTEAIDWL    KSAID LSRPL+TED      S  LP
Subjt:  RRLRSS----AGSGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPLETEDGKRSFPSILLP

XP_023001760.1 transcription factor PCF8-like [Cucurbita maxima]1.9e-3191.46Show/hide
Query:  MEERRLRSSAGSGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPLETEDGKRSFPSI
        MEERRLRSSAGSGKVYTSKGLRAR+LRLSAPTAIQFYDIQDRLGYNRPTEAIDWL    KSAID LSRPLETEDGKRSFPS+
Subjt:  MEERRLRSSAGSGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPLETEDGKRSFPSI

XP_038893685.1 transcription factor TCP10-like [Benincasa hispida]3.7e-1974.32Show/hide
Query:  ERRLRSSAGS--GKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPLETED
        +RRLRSSAG+  GKVYTS+GLRAR+ RLSAPTAI+FYD+QDRLG +RPTE +DWL    KSAID LSRPLET D
Subjt:  ERRLRSSAGS--GKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPLETED

TrEMBL top hitse value%identityAlignment
A0A0A0LUP1 TCP domain-containing protein1.1e-1969.77Show/hide
Query:  RRLRSS----AGSGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPLETEDGKRSFPSILLP
        RRL S+    AG GKVYTSKGLRAR+LRLSAPTAI+FYD+QDRLG  RPTEAIDWL    KSAID LSRPL+TED      S  LP
Subjt:  RRLRSS----AGSGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPLETEDGKRSFPSILLP

A0A1S3B7T4 transcription factor TCP10-like2.4e-1978.08Show/hide
Query:  RRLRSS--AGSGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPLETED
        RRL SS  AG+GKVYTSKGLRAR+LRLSAPTAI+FYD+QDRLG  RPTEAIDWL    K AID LSRPL+TED
Subjt:  RRLRSS--AGSGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPLETED

A0A5A7UTZ9 Transcription factor TCP10-like2.4e-1978.08Show/hide
Query:  RRLRSS--AGSGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPLETED
        RRL SS  AG+GKVYTSKGLRAR+LRLSAPTAI+FYD+QDRLG  RPTEAIDWL    K AID LSRPL+TED
Subjt:  RRLRSS--AGSGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPLETED

A0A6J1KM30 transcription factor PCF8-like9.2e-3291.46Show/hide
Query:  MEERRLRSSAGSGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPLETEDGKRSFPSI
        MEERRLRSSAGSGKVYTSKGLRAR+LRLSAPTAIQFYDIQDRLGYNRPTEAIDWL    KSAID LSRPLETEDGKRSFPS+
Subjt:  MEERRLRSSAGSGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPLETEDGKRSFPSI

A0A6J5UKD4 TCP domain-containing protein1.6e-1271.43Show/hide
Query:  KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRP
        KVYTSKG R R+ RLSAPTAIQFYD+QDRLGY+RP++AIDWL    K+AI+ LS P
Subjt:  KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRP

SwissProt top hitse value%identityAlignment
A2WM14 Transcription factor PCF54.6e-1261.54Show/hide
Query:  KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLPKSAIDVLSR
        KV T++G R R++RLSA TAIQFYD+QDRLGY+RP++A+DWL K+A D + +
Subjt:  KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLPKSAIDVLSR

A2WV68 Transcription factor PCF71.0e-1156.72Show/hide
Query:  RRLRSSAG----SGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVL
        R +RS+AG      KV T++GLR R++RL+A TAI+FYD+QDRLGY+RP++A+DWL    K+AID L
Subjt:  RRLRSSAG----SGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVL

O82277 Transcription factor TCP107.1e-1358.21Show/hide
Query:  KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPLETEDGKRSFP
        KV+TSKG R R++RLSA TAIQFYD+QDRLGY+RP++A+DWL    K+AID L     T    R  P
Subjt:  KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPLETEDGKRSFP

Q8LT07 Transcription factor PCF54.6e-1261.54Show/hide
Query:  KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLPKSAIDVLSR
        KV T++G R R++RLSA TAIQFYD+QDRLGY+RP++A+DWL K+A D + +
Subjt:  KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLPKSAIDVLSR

Q9MAH8 Transcription factor TCP31.2e-1265.45Show/hide
Query:  KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSR
        KV T+KG R R++RLSAPTAIQFYD+QDRLG++RP++A+DWL    KSAID L++
Subjt:  KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSR

Arabidopsis top hitse value%identityAlignment
AT1G30210.1 TEOSINTE BRANCHED 1, cycloidea, and PCF family 242.8e-1252.24Show/hide
Query:  RRLRSSAGSG------KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLPKSAIDVLS
        R +R S  SG      KV TSKGLR R++RLS  TAIQFYD+QDRLG+++P++A++WL  +A D ++
Subjt:  RRLRSSAGSG------KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLPKSAIDVLS

AT1G53230.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 38.6e-1465.45Show/hide
Query:  KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSR
        KV T+KG R R++RLSAPTAIQFYD+QDRLG++RP++A+DWL    KSAID L++
Subjt:  KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSR

AT2G31070.1 TCP domain protein 105.0e-1458.21Show/hide
Query:  KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPLETEDGKRSFP
        KV+TSKG R R++RLSA TAIQFYD+QDRLGY+RP++A+DWL    K+AID L     T    R  P
Subjt:  KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWL---PKSAIDVLSRPLETEDGKRSFP

AT4G18390.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 22.1e-1253.73Show/hide
Query:  RRLRSSAGSG------KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLPKSAIDVLS
        R +R S  SG      KV TSKG R R++RLS  TA+QFYD+QDRLGY++P++A++WL K+A D +S
Subjt:  RRLRSSAGSG------KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLPKSAIDVLS

AT4G18390.2 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 22.1e-1253.73Show/hide
Query:  RRLRSSAGSG------KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLPKSAIDVLS
        R +R S  SG      KV TSKG R R++RLS  TA+QFYD+QDRLGY++P++A++WL K+A D +S
Subjt:  RRLRSSAGSG------KVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLPKSAIDVLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAACGTCGCTTGCGTTCGAGCGCCGGCAGTGGCAAGGTTTACACTTCAAAAGGCCTCCGAGCCAGGAAGCTCCGGCTGTCGGCTCCGACCGCCATTCAATTCTA
CGACATTCAGGATCGCCTTGGCTATAACCGACCAACTGAAGCCATCGACTGGCTTCCCAAATCCGCCATTGATGTCCTCTCTCGACCATTAGAAACAGAGGACGGCAAGC
GTAGCTTCCCTTCTATCCTTCTTCCGTTCCGTCGTCGTCTTCTTCTTCCCAATTCGTGGCTTACCCACTTGAAAATTTCTTCCAAAATGTTCGATTATTGTTTTTGTTTT
CTGGAAAATTTTTTAAAGTTGCCAGAAATGAAGTTGTGTGATTCTGTAACAGGGCAACCTCTCTGTTTTGAGTCCAATGATAATGAATGTCACGCCGGCGGAATTCTCCG
GCATGCAGCCACCGTGTTCAAGTCAGAGCTATGCAACAACTGGGTTACCATCCTTTCCAACGTGGGAATAGCAACCGCCAAACGCCAGCCGCCGGATGATTTTCAAACGT
GA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAACGTCGCTTGCGTTCGAGCGCCGGCAGTGGCAAGGTTTACACTTCAAAAGGCCTCCGAGCCAGGAAGCTCCGGCTGTCGGCTCCGACCGCCATTCAATTCTA
CGACATTCAGGATCGCCTTGGCTATAACCGACCAACTGAAGCCATCGACTGGCTTCCCAAATCCGCCATTGATGTCCTCTCTCGACCATTAGAAACAGAGGACGGCAAGC
GTAGCTTCCCTTCTATCCTTCTTCCGTTCCGTCGTCGTCTTCTTCTTCCCAATTCGTGGCTTACCCACTTGAAAATTTCTTCCAAAATGTTCGATTATTGTTTTTGTTTT
CTGGAAAATTTTTTAAAGTTGCCAGAAATGAAGTTGTGTGATTCTGTAACAGGGCAACCTCTCTGTTTTGAGTCCAATGATAATGAATGTCACGCCGGCGGAATTCTCCG
GCATGCAGCCACCGTGTTCAAGTCAGAGCTATGCAACAACTGGGTTACCATCCTTTCCAACGTGGGAATAGCAACCGCCAAACGCCAGCCGCCGGATGATTTTCAAACGT
GA
Protein sequenceShow/hide protein sequence
MEERRLRSSAGSGKVYTSKGLRARKLRLSAPTAIQFYDIQDRLGYNRPTEAIDWLPKSAIDVLSRPLETEDGKRSFPSILLPFRRRLLLPNSWLTHLKISSKMFDYCFCF
LENFLKLPEMKLCDSVTGQPLCFESNDNECHAGGILRHAATVFKSELCNNWVTILSNVGIATAKRQPPDDFQT