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Carg21533 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21533
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionChaperonin 60 subunit beta 4
Genome locationCarg_Chr18:10417208..10419087
RNA-Seq ExpressionCarg21533
SyntenyCarg21533
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6574018.1 hypothetical protein SDJN03_27905, partial [Cucurbita argyrosperma subsp. sororia]1.7e-16100Show/hide
Query:  NSKLKKKMLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS
        NSKLKKKMLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS
Subjt:  NSKLKKKMLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS

KAG7013078.1 hypothetical protein SDJN02_25834, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-48100Show/hide
Query:  MAMPDGVDESVGGGLKYSVTSNPDSSEACRNFAASASVNGHGRLRFDFYSCTQNSKLKKKMLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFL
        MAMPDGVDESVGGGLKYSVTSNPDSSEACRNFAASASVNGHGRLRFDFYSCTQNSKLKKKMLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFL
Subjt:  MAMPDGVDESVGGGLKYSVTSNPDSSEACRNFAASASVNGHGRLRFDFYSCTQNSKLKKKMLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFL

Query:  HSTKDVS
        HSTKDVS
Subjt:  HSTKDVS

XP_022945350.1 uncharacterized protein LOC111449609 [Cucurbita moschata]1.5e-12100Show/hide
Query:  MLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS
        MLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS
Subjt:  MLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS

XP_022968523.1 uncharacterized protein LOC111467728 [Cucurbita maxima]5.3e-2698.57Show/hide
Query:  VNGHGRLRFDFYSCTQNSKLKKKMLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS
        VNGHGRLRFDFYS TQNSKLKKKMLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS
Subjt:  VNGHGRLRFDFYSCTQNSKLKKKMLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS

XP_023541065.1 uncharacterized protein LOC111801338 [Cucurbita pepo subsp. pepo]2.0e-1297.87Show/hide
Query:  MLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS
        MLISLSIQGLLDLFVAG+SLVIGLGIFALIATILCSAAFLHSTKDVS
Subjt:  MLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS

TrEMBL top hitse value%identityAlignment
A0A1R3HPT2 Uncharacterized protein1.3e-0670.21Show/hide
Query:  MLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS
        +L+ LS+Q L+DL +AG SL+IGLGIFA IA+ILCSAAFLH  KDVS
Subjt:  MLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS

A0A6J1D4T9 uncharacterized protein LOC1110175961.6e-0778.72Show/hide
Query:  MLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS
        M++  SIQ +LDL VAGISLVIGLGIFALIA+ILCSAAFL S KDVS
Subjt:  MLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS

A0A6J1G0P8 uncharacterized protein LOC1114496097.3e-13100Show/hide
Query:  MLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS
        MLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS
Subjt:  MLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS

A0A6J1HY94 uncharacterized protein LOC1114677282.6e-2698.57Show/hide
Query:  VNGHGRLRFDFYSCTQNSKLKKKMLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS
        VNGHGRLRFDFYS TQNSKLKKKMLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS
Subjt:  VNGHGRLRFDFYSCTQNSKLKKKMLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS

W9QP51 Chaperonin 60 subunit beta 44.6e-0742Show/hide
Query:  DESVGGGLKYSVTSNPDSSEACRNFAASASVNGHGRLRFDFYSCTQNSKLKKKMLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS
        D +       + T+N D++    N    AS N + R R D Y   +  + K   ++  S+Q +LDL VAG SL+IGLGIFA IA++LCSAAFL + KD S
Subjt:  DESVGGGLKYSVTSNPDSSEACRNFAASASVNGHGRLRFDFYSCTQNSKLKKKMLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATGCCCGATGGAGTGGATGAGAGCGTGGGAGGAGGATTAAAGTACAGTGTCACATCGAATCCAGATAGCAGTGAGGCGTGTCGTAATTTTGCTGCCTCTGCATC
TGTTAATGGCCATGGCCGTTTGCGTTTCGATTTTTACTCTTGCACGCAGAATAGCAAGTTGAAGAAGAAGATGCTGATCAGTTTGAGCATTCAAGGCCTATTGGATTTGT
TCGTCGCCGGAATTTCTCTCGTCATAGGTTTGGGAATTTTTGCTCTTATTGCTACCATTCTTTGCTCTGCCGCGTTCTTGCACAGTACTAAGGATGTTTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGATGCCCGATGGAGTGGATGAGAGCGTGGGAGGAGGATTAAAGTACAGTGTCACATCGAATCCAGATAGCAGTGAGGCGTGTCGTAATTTTGCTGCCTCTGCATC
TGTTAATGGCCATGGCCGTTTGCGTTTCGATTTTTACTCTTGCACGCAGAATAGCAAGTTGAAGAAGAAGATGCTGATCAGTTTGAGCATTCAAGGCCTATTGGATTTGT
TCGTCGCCGGAATTTCTCTCGTCATAGGTTTGGGAATTTTTGCTCTTATTGCTACCATTCTTTGCTCTGCCGCGTTCTTGCACAGTACTAAGGATGTTTCCTAA
Protein sequenceShow/hide protein sequence
MAMPDGVDESVGGGLKYSVTSNPDSSEACRNFAASASVNGHGRLRFDFYSCTQNSKLKKKMLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS