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Carg21592 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21592
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLOB domain-containing protein 42-like
Genome locationCarg_Chr16:6032229..6033445
RNA-Seq ExpressionCarg21592
SyntenyCarg21592
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR004883 - Lateral organ boundaries, LOB


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573961.1 LOB domain-containing protein 42, partial [Cucurbita argyrosperma subsp. sororia]5.9e-85100Show/hide
Query:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRDKSKPKPGP
        SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRDKSKPKPGP
Subjt:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRDKSKPKPGP

Query:  GHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ
        GHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ
Subjt:  GHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ

KAG7015491.1 LOB domain-containing protein 42, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-116100Show/hide
Query:  MAAGSFAKAAAMTVLSDLVFNGSPPLILRPTPPSFSPNSMAVRVSSTSSPPQPNTSALSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI
        MAAGSFAKAAAMTVLSDLVFNGSPPLILRPTPPSFSPNSMAVRVSSTSSPPQPNTSALSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI
Subjt:  MAAGSFAKAAAMTVLSDLVFNGSPPLILRPTPPSFSPNSMAVRVSSTSSPPQPNTSALSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI

Query:  VEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRDKSKPKPGPGHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEE
        VEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRDKSKPKPGPGHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEE
Subjt:  VEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRDKSKPKPGPGHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEE

Query:  DVELELTLNSAQ
        DVELELTLNSAQ
Subjt:  DVELELTLNSAQ

XP_022945568.1 LOB domain-containing protein 42-like [Cucurbita moschata]5.0e-8499.35Show/hide
Query:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRDKSKPKPGP
        SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHR KSKPKPGP
Subjt:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRDKSKPKPGP

Query:  GHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ
        GHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ
Subjt:  GHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ

XP_022968330.1 LOB domain-containing protein 42-like [Cucurbita maxima]6.3e-7996.1Show/hide
Query:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRDKSKPKPGP
        SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPD+R KS  KPGP
Subjt:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRDKSKPKPGP

Query:  GHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ
        G ELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEE VELELTLNSAQ
Subjt:  GHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ

XP_023542000.1 LOB domain-containing protein 42-like [Cucurbita pepo subsp. pepo]3.7e-7996.1Show/hide
Query:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRDKSKPKPGP
        SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPD+R KS  KPGP
Subjt:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRDKSKPKPGP

Query:  GHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ
        G+ELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDV LELTLNSAQ
Subjt:  GHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ

TrEMBL top hitse value%identityAlignment
A0A0A0KUI0 LOB domain-containing protein1.2e-4364.52Show/hide
Query:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNT-NLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRDKSKPKPG
        SLLYEACGRMVNPVYGSVGLLCSGDW++CQAAVDAVL GSM VEPD P SN  NLSLKCCDIRHVCN+ NLA  G+L K K R+RFKKPDHR  +KPKPG
Subjt:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNT-NLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRDKSKPKPG

Query:  PGHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ
        P H+LG GS+      D    D+    R          + + +DVELELTL SAQ
Subjt:  PGHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ

A0A5A7SXG6 LOB domain-containing protein 40-like1.9e-4465.81Show/hide
Query:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNT-NLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRDKSKPKPG
        SLLYEACGRMVNPVYGSVGLLCSGDW++CQAAVDAVL GSM VEPD P SN  N SLKCCDIRHVCN+ NLA  G+L K K R+RFKKPDHR KS  KPG
Subjt:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNT-NLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRDKSKPKPG

Query:  PGHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ
        P HELG GS+ +                + G  LR+G   E+ DVELELTL SAQ
Subjt:  PGHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ

A0A6J1DAV9 uncharacterized protein LOC1110186335.3e-4768.99Show/hide
Query:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRDKSKPKPGP
        SLLYEACGRMVNPVYGSVGLLCSGDWD+CQAAVDAVLTG+M VE +AP SN N  + CCDIRHVC DTNLA PGE  K K R+RFKKPDHR  +KPK GP
Subjt:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRDKSKPKPGP

Query:  GHELGSGSNVEVIEIDR---MADDLMTNRRKPGWVLRNGMWVEEED-VELELTLNSAQ
           LGSGSN      +R   M D L  NR KP  VLR+G   E  D VELELTLNSAQ
Subjt:  GHELGSGSNVEVIEIDR---MADDLMTNRRKPGWVLRNGMWVEEED-VELELTLNSAQ

A0A6J1G195 LOB domain-containing protein 42-like2.4e-8499.35Show/hide
Query:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRDKSKPKPGP
        SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHR KSKPKPGP
Subjt:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRDKSKPKPGP

Query:  GHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ
        GHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ
Subjt:  GHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ

A0A6J1HWX5 LOB domain-containing protein 42-like3.1e-7996.1Show/hide
Query:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRDKSKPKPGP
        SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPD+R KS  KPGP
Subjt:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRDKSKPKPGP

Query:  GHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ
        G ELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEE VELELTLNSAQ
Subjt:  GHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ

SwissProt top hitse value%identityAlignment
Q9CA30 LOB domain-containing protein 424.3e-1448Show/hide
Query:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSL----KCCDIRHVCND--------TNLAVPGELHKGKTR-NRFKK
        SLLYEACGR+VNPV GSVGL+ SG+W +CQAAVDAVL G  I     P ++ +  +    +  DIRHV  D         NLA     +K KT+  RFK+
Subjt:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSL----KCCDIRHVCND--------TNLAVPGELHKGKTR-NRFKK

Q9FN11 LOB domain-containing protein 372.1e-0852.54Show/hide
Query:  VSSTSSPPQPNTSAL--SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI
        +S  S+ P     AL  SLLYEACGR VNPV G++G+L +G+W+ CQAAV+ VL G  +
Subjt:  VSSTSSPPQPNTSAL--SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI

Q9M886 LOB domain-containing protein 415.7e-1450Show/hide
Query:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVE--PDAPLSNTNLSLKCCDIRHVCNDTNLAVPG----ELHKGKTR
        SLL+EACGR+VNP+YGSVGLL SG+W  CQ AV+AV+ G  + E   DA        LK  DIRH+  D N A       +L   KTR
Subjt:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVE--PDAPLSNTNLSLKCCDIRHVCNDTNLAVPG----ELHKGKTR

Q9SN23 LOB domain-containing protein 384.2e-0955.93Show/hide
Query:  VSSTSSPPQPNTSAL--SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI
        +S  S+ P+    AL  SLLYEACGR VNPV G+VGLL +G+W+ CQAAV+ VL G  +
Subjt:  VSSTSSPPQPNTSAL--SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI

Q9ZW96 LOB domain-containing protein 401.3e-1358.82Show/hide
Query:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI--VEPDAPLSN--TNLSLKCCDIRHV
        SLLYEACGR+VNP+YGSVGLL SG+W  CQAAV+AV+ GS +  +  DA ++      + K CDIRHV
Subjt:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI--VEPDAPLSN--TNLSLKCCDIRHV

Arabidopsis top hitse value%identityAlignment
AT1G67100.1 LOB domain-containing protein 409.0e-1558.82Show/hide
Query:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI--VEPDAPLSN--TNLSLKCCDIRHV
        SLLYEACGR+VNP+YGSVGLL SG+W  CQAAV+AV+ GS +  +  DA ++      + K CDIRHV
Subjt:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI--VEPDAPLSN--TNLSLKCCDIRHV

AT1G68510.1 LOB domain-containing protein 423.1e-1548Show/hide
Query:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSL----KCCDIRHVCND--------TNLAVPGELHKGKTR-NRFKK
        SLLYEACGR+VNPV GSVGL+ SG+W +CQAAVDAVL G  I     P ++ +  +    +  DIRHV  D         NLA     +K KT+  RFK+
Subjt:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSL----KCCDIRHVCND--------TNLAVPGELHKGKTR-NRFKK

AT3G02550.1 LOB domain-containing protein 414.0e-1550Show/hide
Query:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVE--PDAPLSNTNLSLKCCDIRHVCNDTNLAVPG----ELHKGKTR
        SLL+EACGR+VNP+YGSVGLL SG+W  CQ AV+AV+ G  + E   DA        LK  DIRH+  D N A       +L   KTR
Subjt:  SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVE--PDAPLSNTNLSLKCCDIRHVCNDTNLAVPG----ELHKGKTR

AT3G49940.1 LOB domain-containing protein 383.0e-1055.93Show/hide
Query:  VSSTSSPPQPNTSAL--SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI
        +S  S+ P+    AL  SLLYEACGR VNPV G+VGLL +G+W+ CQAAV+ VL G  +
Subjt:  VSSTSSPPQPNTSAL--SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI

AT5G67420.1 LOB domain-containing protein 371.5e-0952.54Show/hide
Query:  VSSTSSPPQPNTSAL--SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI
        +S  S+ P     AL  SLLYEACGR VNPV G++G+L +G+W+ CQAAV+ VL G  +
Subjt:  VSSTSSPPQPNTSAL--SLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCCGGATCCTTCGCAAAGGCTGCAGCCATGACTGTATTATCAGACCTTGTCTTCAATGGATCCCCTCCCCTGATTCTCAGGCCAACGCCACCATCTTTCTCGCC
AAATTCTATGGCCGTGCGGGTCTCTTCAACCTCATCACCGCCGCAGCCGAACACCTCCGCCCTGTCGTTGCTGTACGAGGCATGCGGCCGGATGGTGAATCCGGTCTACG
GCTCCGTCGGATTGCTCTGCTCCGGCGACTGGGATAAGTGTCAGGCCGCCGTCGACGCCGTGTTGACCGGATCCATGATCGTCGAACCAGACGCGCCGCTGTCAAACACT
AACCTTTCCCTTAAATGTTGCGACATTCGTCATGTTTGTAACGACACCAATTTGGCAGTTCCCGGCGAGCTTCACAAGGGCAAGACTCGGAACCGGTTCAAAAAGCCCGA
CCATCGAGACAAATCCAAACCCAAACCCGGACCGGGTCATGAATTGGGAAGTGGGTCGAATGTGGAGGTGATAGAGATAGACCGAATGGCCGATGATTTGATGACGAACC
GGAGGAAACCGGGTTGGGTTTTGAGAAATGGAATGTGGGTTGAGGAGGAGGATGTTGAGCTGGAGCTGACTCTTAATTCGGCTCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCCGGATCCTTCGCAAAGGCTGCAGCCATGACTGTATTATCAGACCTTGTCTTCAATGGATCCCCTCCCCTGATTCTCAGGCCAACGCCACCATCTTTCTCGCC
AAATTCTATGGCCGTGCGGGTCTCTTCAACCTCATCACCGCCGCAGCCGAACACCTCCGCCCTGTCGTTGCTGTACGAGGCATGCGGCCGGATGGTGAATCCGGTCTACG
GCTCCGTCGGATTGCTCTGCTCCGGCGACTGGGATAAGTGTCAGGCCGCCGTCGACGCCGTGTTGACCGGATCCATGATCGTCGAACCAGACGCGCCGCTGTCAAACACT
AACCTTTCCCTTAAATGTTGCGACATTCGTCATGTTTGTAACGACACCAATTTGGCAGTTCCCGGCGAGCTTCACAAGGGCAAGACTCGGAACCGGTTCAAAAAGCCCGA
CCATCGAGACAAATCCAAACCCAAACCCGGACCGGGTCATGAATTGGGAAGTGGGTCGAATGTGGAGGTGATAGAGATAGACCGAATGGCCGATGATTTGATGACGAACC
GGAGGAAACCGGGTTGGGTTTTGAGAAATGGAATGTGGGTTGAGGAGGAGGATGTTGAGCTGGAGCTGACTCTTAATTCGGCTCAGTAA
Protein sequenceShow/hide protein sequence
MAAGSFAKAAAMTVLSDLVFNGSPPLILRPTPPSFSPNSMAVRVSSTSSPPQPNTSALSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNT
NLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRDKSKPKPGPGHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ