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Carg21601 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21601
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein YABBY 4-like
Genome locationCarg_Chr06:4056093..4057992
RNA-Seq ExpressionCarg21601
SyntenyCarg21601
Gene Ontology termsGO:0009944 - polarity specification of adaxial/abaxial axis (biological process)
GO:0010154 - fruit development (biological process)
GO:0010158 - abaxial cell fate specification (biological process)
GO:1902183 - regulation of shoot apical meristem development (biological process)
GO:2000024 - regulation of leaf development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
InterPro domainsIPR006780 - YABBY protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596843.1 Protein YABBY 4, partial [Cucurbita argyrosperma subsp. sororia]2.7e-6798.44Show/hide
Query:  MSSFSLPTTFSQH-PPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFV
        MSSFSLPTTFSQH PPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNH HHTAFFSPNAHNFLEEISNPNPNFV
Subjt:  MSSFSLPTTFSQH-PPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFV

Query:  MNQTDGIDLAMATRVGNDVPRPPPSINR
        MNQTDGIDLAMATRVGNDVPRPPPSINR
Subjt:  MNQTDGIDLAMATRVGNDVPRPPPSINR

KAG7028372.1 Protein YABBY 4, partial [Cucurbita argyrosperma subsp. argyrosperma]5.1e-74100Show/hide
Query:  MSSFSLPTTFSQHPPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVM
        MSSFSLPTTFSQHPPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVM
Subjt:  MSSFSLPTTFSQHPPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVM

Query:  NQTDGIDLAMATRVGNDVPRPPPSINRREIIEFIS
        NQTDGIDLAMATRVGNDVPRPPPSINRREIIEFIS
Subjt:  NQTDGIDLAMATRVGNDVPRPPPSINRREIIEFIS

XP_022947097.1 protein YABBY 4-like, partial [Cucurbita moschata]3.5e-6799.21Show/hide
Query:  SFSLPTTFSQH-PPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMN
        SFSLPTTFSQH PPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMN
Subjt:  SFSLPTTFSQH-PPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMN

Query:  QTDGIDLAMATRVGNDVPRPPPSINR
        QTDGIDLAMATRVGNDVPRPPPSINR
Subjt:  QTDGIDLAMATRVGNDVPRPPPSINR

XP_023539156.1 axial regulator YABBY 3-like isoform X1 [Cucurbita pepo subsp. pepo]2.6e-6292.13Show/hide
Query:  MSSFSLPTTFSQHPPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVM
        MSSFSLPTT    PPPPSSDHLCYVHCN+CDTVLAVSVPCASLFKTV VRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSPNAHNFLEEIS+PNPNFVM
Subjt:  MSSFSLPTTFSQHPPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVM

Query:  NQTDGIDLAMATRVGNDVPRPPPSINR
        NQTDGIDL MATRVGN+VPRPPPSIN+
Subjt:  NQTDGIDLAMATRVGNDVPRPPPSINR

XP_023539158.1 axial regulator YABBY 3-like isoform X2 [Cucurbita pepo subsp. pepo]2.6e-6292.13Show/hide
Query:  MSSFSLPTTFSQHPPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVM
        MSSFSLPTT    PPPPSSDHLCYVHCN+CDTVLAVSVPCASLFKTV VRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSPNAHNFLEEIS+PNPNFVM
Subjt:  MSSFSLPTTFSQHPPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVM

Query:  NQTDGIDLAMATRVGNDVPRPPPSINR
        NQTDGIDL MATRVGN+VPRPPPSIN+
Subjt:  NQTDGIDLAMATRVGNDVPRPPPSINR

TrEMBL top hitse value%identityAlignment
A0A1S4DXY3 protein YABBY 4-like1.1e-5079.39Show/hide
Query:  MSSFSLPTTFSQHPPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHF----HHTAFFSPNAHNFLEEISNPNP
        MSS SLPTTFSQ PPP  SD LCYVHCN+CDTVLAVSVP  SLFK VTVRCG+CANLLPV+M GGMLLPSP+ F    H T FFSPN HNFLEEISNPNP
Subjt:  MSSFSLPTTFSQHPPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHF----HHTAFFSPNAHNFLEEISNPNP

Query:  NFVMNQTDGIDLAMATRVGNDVPRPPPSINR
        NF+MNQT+GIDL MATRV NDVPR PP+INR
Subjt:  NFVMNQTDGIDLAMATRVGNDVPRPPPSINR

A0A5D3D7E7 Protein YABBY 4-like7.0e-5380Show/hide
Query:  MSSFSLPTTFSQHPPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHF----HHTAFFSPNAHNFLEEISNPNP
        MSS SLPTTFSQ PPP  SD LCYVHCN+CDTVLAVSVP  SLFK VTVRCG+CANLLPV+M GGMLLPSP+ F    H T FFSPN HNFLEEISNPNP
Subjt:  MSSFSLPTTFSQHPPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHF----HHTAFFSPNAHNFLEEISNPNP

Query:  NFVMNQTDGIDLAMATRVGNDVPRPPPSINRREII
        NF+MNQT+GIDL MATRV NDVPR PP+INRREII
Subjt:  NFVMNQTDGIDLAMATRVGNDVPRPPPSINRREII

A0A6J1G5H6 protein YABBY 4-like1.7e-6799.21Show/hide
Query:  SFSLPTTFSQH-PPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMN
        SFSLPTTFSQH PPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMN
Subjt:  SFSLPTTFSQH-PPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMN

Query:  QTDGIDLAMATRVGNDVPRPPPSINR
        QTDGIDLAMATRVGNDVPRPPPSINR
Subjt:  QTDGIDLAMATRVGNDVPRPPPSINR

A0A6J1KXR1 protein YABBY 4-like isoform X27.0e-6187.97Show/hide
Query:  MSSFSLPTTFSQH-PPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFH-----HTAFFSPNAHNFLEEISNP
        MSSFSLPTTFSQH PPPPSSDHLCYVHCN+CDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFH      T FF+PNAHNFLEEISNP
Subjt:  MSSFSLPTTFSQH-PPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFH-----HTAFFSPNAHNFLEEISNP

Query:  NPNFVMNQTDGIDLAMATRVGNDVPRPPPSINR
        NPNF MNQTDGIDL M TRVGNDVPR P +INR
Subjt:  NPNFVMNQTDGIDLAMATRVGNDVPRPPPSINR

A0A6J1KZK7 protein YABBY 4-like isoform X17.0e-6187.97Show/hide
Query:  MSSFSLPTTFSQH-PPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFH-----HTAFFSPNAHNFLEEISNP
        MSSFSLPTTFSQH PPPPSSDHLCYVHCN+CDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFH      T FF+PNAHNFLEEISNP
Subjt:  MSSFSLPTTFSQH-PPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFH-----HTAFFSPNAHNFLEEISNP

Query:  NPNFVMNQTDGIDLAMATRVGNDVPRPPPSINR
        NPNF MNQTDGIDL M TRVGNDVPR P +INR
Subjt:  NPNFVMNQTDGIDLAMATRVGNDVPRPPPSINR

SwissProt top hitse value%identityAlignment
A2X7Q3 Protein YABBY 46.1e-2250Show/hide
Query:  PPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPN-------HFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDL
        P  ++ LCYVHCN CDT+LAV VPC+SLFKTVTVRCGHCANLL VN+R G+LLP+P        HF  +     + H  L+E++   P+ +M Q     L
Subjt:  PPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPN-------HFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDL

Query:  AMAT
        +  T
Subjt:  AMAT

Q01JG2 Protein YABBY 54.9e-1953.4Show/hide
Query:  SLPTTFS---------QHPPP-PSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHH-----TAFFSPNA-HNFL
        S P TFS         Q PPP    + LCYVHCN CDT+LAV VPC+SLFKTVTVRCGHCANLL VN+R G+LLP+     +      A  SP + H  L
Subjt:  SLPTTFS---------QHPPP-PSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHH-----TAFFSPNA-HNFL

Query:  EEI
        +E+
Subjt:  EEI

Q0JBF0 Protein YABBY 54.9e-1953.4Show/hide
Query:  SLPTTFS---------QHPPP-PSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHH-----TAFFSPNA-HNFL
        S P TFS         Q PPP    + LCYVHCN CDT+LAV VPC+SLFKTVTVRCGHCANLL VN+R G+LLP+     +      A  SP + H  L
Subjt:  SLPTTFS---------QHPPP-PSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHH-----TAFFSPNA-HNFL

Query:  EEI
        +E+
Subjt:  EEI

Q6H668 Protein YABBY 46.1e-2250Show/hide
Query:  PPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPN-------HFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDL
        P  ++ LCYVHCN CDT+LAV VPC+SLFKTVTVRCGHCANLL VN+R G+LLP+P        HF  +     + H  L+E++   P+ +M Q     L
Subjt:  PPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPN-------HFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDL

Query:  AMAT
        +  T
Subjt:  AMAT

Q9XFB1 Axial regulator YABBY 35.7e-2045.21Show/hide
Query:  MSSFSLPTTFSQHPPP---PSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNM-RGGMLLPSPNHFHHTAF---FSPNAHNFLEEISN
        MSS S+ ++ +   PP    S+D LCYVHC+ CDTVLAVSVP +SLFKTVTVRCGHC+NLL V +    +LLPS ++  H+       P   N LEE+ +
Subjt:  MSSFSLPTTFSQHPPP---PSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNM-RGGMLLPSPNHFHHTAF---FSPNAHNFLEEISN

Query:  PNPNFVMNQT---------DGIDLAMATRVGNDV------PRPPPS
           N  MN               L MATR G  V      PRPPP+
Subjt:  PNPNFVMNQT---------DGIDLAMATRVGNDV------PRPPPS

Arabidopsis top hitse value%identityAlignment
AT1G08465.1 Plant-specific transcription factor YABBY family protein5.3e-1340.35Show/hide
Query:  SSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATR----
        SS+ +CYVHC+ C T+LAVSVP ASLF  VTVRCGHC NLL +N+  G+ L      H T+  +P  H  L+    P+     +     D A ++R    
Subjt:  SSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATR----

Query:  ----VGNDVPRPPP
            +  + PR PP
Subjt:  ----VGNDVPRPPP

AT2G26580.1 plant-specific transcription factor YABBY family protein5.3e-1349.23Show/hide
Query:  SSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSP
        +++ LCY+ CN C+ +LAV+VPC+SLF  VTVRCGHC NL  VNM   +   S  +F  T +  P
Subjt:  SSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSP

AT2G26580.2 plant-specific transcription factor YABBY family protein5.3e-1349.23Show/hide
Query:  SSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSP
        +++ LCY+ CN C+ +LAV+VPC+SLF  VTVRCGHC NL  VNM   +   S  +F  T +  P
Subjt:  SSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSP

AT2G45190.1 Plant-specific transcription factor YABBY family protein4.2e-1844.6Show/hide
Query:  MSSFSLPTTFSQHPPPPS-SDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFH-----HTAFFSPNAHNFLEEISNP
        MSS S P++    P   S SDHLCYV CN C T+LAV+VP  SLFKTVTVRCG C NLL VNMR   +LP+ N        H+ F   N  + LEE+ + 
Subjt:  MSSFSLPTTFSQHPPPPS-SDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFH-----HTAFFSPNAHNFLEEISNP

Query:  NPN---FVMNQ---TDGIDLAMATRVGNDVPRPPPSINR
          N    +MNQ    + I   M     +++P+ PP +NR
Subjt:  NPN---FVMNQ---TDGIDLAMATRVGNDVPRPPPSINR

AT4G00180.1 Plant-specific transcription factor YABBY family protein4.1e-2145.21Show/hide
Query:  MSSFSLPTTFSQHPPP---PSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNM-RGGMLLPSPNHFHHTAF---FSPNAHNFLEEISN
        MSS S+ ++ +   PP    S+D LCYVHC+ CDTVLAVSVP +SLFKTVTVRCGHC+NLL V +    +LLPS ++  H+       P   N LEE+ +
Subjt:  MSSFSLPTTFSQHPPP---PSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNM-RGGMLLPSPNHFHHTAF---FSPNAHNFLEEISN

Query:  PNPNFVMNQT---------DGIDLAMATRVGNDV------PRPPPS
           N  MN               L MATR G  V      PRPPP+
Subjt:  PNPNFVMNQT---------DGIDLAMATRVGNDV------PRPPPS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCTTTTTCCCTTCCCACCACCTTCTCCCAACATCCTCCTCCTCCTTCCTCCGACCACCTTTGCTATGTCCATTGCAACGTTTGCGACACAGTTTTGGCGGTGAG
TGTTCCTTGTGCTAGTTTGTTCAAAACGGTGACCGTCCGTTGCGGCCACTGCGCCAATCTTCTACCGGTCAACATGCGTGGTGGCATGCTTCTCCCTTCTCCCAATCACT
TTCATCATACTGCTTTCTTCTCTCCCAATGCTCACAATTTTCTGGAAGAGATCTCAAATCCAAATCCAAATTTTGTGATGAACCAAACCGACGGAATTGATTTGGCAATG
GCAACTCGGGTAGGAAACGATGTTCCAAGGCCACCCCCAAGCATAAATAGACGTGAGATAATTGAATTCATTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTCTTTTTCCCTTCCCACCACCTTCTCCCAACATCCTCCTCCTCCTTCCTCCGACCACCTTTGCTATGTCCATTGCAACGTTTGCGACACAGTTTTGGCGGTGAG
TGTTCCTTGTGCTAGTTTGTTCAAAACGGTGACCGTCCGTTGCGGCCACTGCGCCAATCTTCTACCGGTCAACATGCGTGGTGGCATGCTTCTCCCTTCTCCCAATCACT
TTCATCATACTGCTTTCTTCTCTCCCAATGCTCACAATTTTCTGGAAGAGATCTCAAATCCAAATCCAAATTTTGTGATGAACCAAACCGACGGAATTGATTTGGCAATG
GCAACTCGGGTAGGAAACGATGTTCCAAGGCCACCCCCAAGCATAAATAGACGTGAGATAATTGAATTCATTTCTTAAATTTTGTTATGTTTTTACTACAATGTCGTTGT
AGTATTAGTAGTGAGTATTCCCGCCTGAAATTTTGTTCTGTTTTTTTGTGTGGTCTTTTCATACAAATTTGGAACTCTGGATAGGTCTAAAATGGGGTTTGGAAGTGAGA
TTGAAAAGGGGATTGATTTAAATTGTGACACAGCTGCAGAAAAGAAACAGAGAGTACCCTCTGCATACAACCGATTCATCAAGGAGGAGATCCAACGCATCAAGGCTGCC
AATCCAGACATCTCTCACAGAGAAGCCTTCAGCGCTGCAGCTAAGAATCAGTGGGCCCACTTCCCTCACATTCATAATTTTGGTGTTCCTCCCAACAGCAACAACAACAC
AACCTAGCTTGCTTCTTCAACAGGTCAAACACTCCCTCCTCCTCCTCCTCTTTCTTTCTTTCGTTCTTTCTTTCTTTCTCC
Protein sequenceShow/hide protein sequence
MSSFSLPTTFSQHPPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAM
ATRVGNDVPRPPPSINRREIIEFIS