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Carg21612 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21612
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCornichon family protein
Genome locationCarg_Chr06:3987296..3991593
RNA-Seq ExpressionCarg21612
SyntenyCarg21612
Gene Ontology termsGO:0016192 - vesicle-mediated transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR003377 - Cornichon


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028361.1 Protein cornichon-like 4 [Cucurbita argyrosperma subsp. argyrosperma]6.3e-66100Show/hide
Query:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNVSTKTAPDRCYRDIQYAK
        MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNVSTKTAPDRCYRDIQYAK
Subjt:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNVSTKTAPDRCYRDIQYAK

Query:  LGKEATAFQTSLSSFPPLPLCILTRKRD
        LGKEATAFQTSLSSFPPLPLCILTRKRD
Subjt:  LGKEATAFQTSLSSFPPLPLCILTRKRD

XP_021613096.1 protein cornichon homolog 4-like isoform X2 [Manihot esculenta]2.0e-4374.58Show/hide
Query:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNVSTKTAPDRCYRDIQYAK
        MGDLYVWL+SFFFLIAL++++++QLMCLADLEFDYINPYDS+SRINKVI PE+I+ GVL LFYLLTGHW MS+LCGPY+YYN+  KTA  RC  DIQ+A 
Subjt:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNVSTKTAPDRCYRDIQYAK

Query:  LGKEATAFQTSLSSFPPL
        LGK+A  FQT LS FPPL
Subjt:  LGKEATAFQTSLSSFPPL

XP_022943501.1 protein cornichon homolog 4-like [Cucurbita moschata]1.6e-3798.8Show/hide
Query:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNV
        MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSAS+INKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNV
Subjt:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNV

XP_023005595.1 protein cornichon homolog 4-like [Cucurbita maxima]5.6e-38100Show/hide
Query:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNV
        MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNV
Subjt:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNV

XP_023539252.1 protein cornichon homolog 4-like [Cucurbita pepo subsp. pepo]5.6e-38100Show/hide
Query:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNV
        MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNV
Subjt:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNV

TrEMBL top hitse value%identityAlignment
A0A1S3BLR3 protein cornichon homolog 4 isoform X19.6e-3692.77Show/hide
Query:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNV
        M DLYVWLVSFFFLIALLIVL+YQLMCLADLEFDYINPYDSASRINKVI PEF++MGVLCLFYLLTGHWGMS+LCGPYIYYNV
Subjt:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNV

A0A5D2K0F7 Uncharacterized protein1.4e-3473.96Show/hide
Query:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNVSTKTAPDRCYRDI
        M DL++WL SFF L+ALLI+L+YQL+CLADLEFDYINPYDS+SRINKV+ PEFI  G LC FYLLTGHW MS+LC PY+YYN+ ++TAP RCYRDI
Subjt:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNVSTKTAPDRCYRDI

A0A6J1FRW5 protein cornichon homolog 4-like7.8e-3898.8Show/hide
Query:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNV
        MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSAS+INKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNV
Subjt:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNV

A0A6J1HL36 protein cornichon homolog 4-like1.4e-3487.95Show/hide
Query:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNV
        MGDL+VWL+SFF L+ALLIVL+YQLMCLADLEFDYINPYDSASRINKV+ PEFI++GVLCLFYLLTGHWGMS+LCGPYIYYNV
Subjt:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNV

A0A6J1KXU1 protein cornichon homolog 4-like2.7e-38100Show/hide
Query:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNV
        MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNV
Subjt:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNV

SwissProt top hitse value%identityAlignment
Q3EDD7 Probable protein cornichon homolog 21.5e-2277.05Show/hide
Query:  IYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYN
        I+ L+CLADLEFDYINPYDSASRIN V+ PEFI  GVLC+FYLLTGHW M++LC PY+YYN
Subjt:  IYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYN

Q84W04 Protein cornichon homolog 49.0e-3174.39Show/hide
Query:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYN
        MGD++ WL+SFFFLIAL+ +++YQL+CLADLEFDYINPYDSASRIN V+ PEFI  GVLC+FYLLTGHW M++LC PY+YYN
Subjt:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYN

Q8GWT5 Protein cornichon homolog 35.6e-2564.63Show/hide
Query:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYN
        MG+++ W++SF  LI LL +++YQL+ LADLEFDYINPYDSASRIN V+ PE I  G LC+FYL+TGHW M++LC PY+YYN
Subjt:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYN

Q9C7D7 Protein cornichon homolog 18.1e-1647.5Show/hide
Query:  DLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYN
        DL++W+VSFF  +AL+  + YQ++CL DLE DY+NP+++++RIN+++ PEFI  G LCL +LLT HW   ++  P   Y+
Subjt:  DLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYN

Q9SZ74 Protein cornichon homolog 51.1e-2360.24Show/hide
Query:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNV
        MGDL  W++SF FL  L+I++IYQL CLADLEFD INPYD +SRIN+++ PEF   G+LCL+Y+LTGHW M++L  P+++YN+
Subjt:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNV

Arabidopsis top hitse value%identityAlignment
AT1G12340.1 Cornichon family protein1.1e-2377.05Show/hide
Query:  IYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYN
        I+ L+CLADLEFDYINPYDSASRIN V+ PEFI  GVLC+FYLLTGHW M++LC PY+YYN
Subjt:  IYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYN

AT1G12390.1 Cornichon family protein6.4e-3274.39Show/hide
Query:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYN
        MGD++ WL+SFFFLIAL+ +++YQL+CLADLEFDYINPYDSASRIN V+ PEFI  GVLC+FYLLTGHW M++LC PY+YYN
Subjt:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYN

AT1G62880.1 Cornichon family protein4.0e-2664.63Show/hide
Query:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYN
        MG+++ W++SF  LI LL +++YQL+ LADLEFDYINPYDSASRIN V+ PE I  G LC+FYL+TGHW M++LC PY+YYN
Subjt:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYN

AT3G12180.1 Cornichon family protein5.8e-1747.5Show/hide
Query:  DLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYN
        DL++W+VSFF  +AL+  + YQ++CL DLE DY+NP+++++RIN+++ PEFI  G LCL +LLT HW   ++  P   Y+
Subjt:  DLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYN

AT4G12090.1 Cornichon family protein7.5e-2560.24Show/hide
Query:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNV
        MGDL  W++SF FL  L+I++IYQL CLADLEFD INPYD +SRIN+++ PEF   G+LCL+Y+LTGHW M++L  P+++YN+
Subjt:  MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGATCTATATGTGTGGCTCGTTTCATTCTTCTTTCTCATAGCTCTTCTGATTGTCCTTATATATCAGCTCATGTGCTTGGCAGATCTCGAGTTTGATTATATCAA
CCCTTATGACTCTGCTTCTCGAATTAATAAAGTGATTTTTCCGGAGTTCATTTCTATGGGAGTTTTGTGCCTCTTCTATCTTTTAACGGGGCATTGGGGTATGTCAATAC
TTTGTGGGCCCTACATATATTACAATGTATCTACGAAGACAGCACCTGATAGATGTTACAGAGATATTCAATATGCTAAACTGGGAAAAGAAGCAACGGCTTTTCAAACT
AGCCTATCTAGTTTTCCTCCTCTTCCTCTCTGTATTTTGACAAGAAAAAGAGATTGA
mRNA sequenceShow/hide mRNA sequence
TTTCCGTCCAAAAGGATCGTTTGAAATTTGACTCGCTAACCGATCGGCGACGGCGTTCGGCATTCGGCAACGTCGAGTTCTTCCGGTCATCCTAACCCACTTTCCAGTTC
AGCCCTAATCTCTTTCTACTGCATCTTCACTCAGCTGCCATCTTGCTCGGAAATGGTGTTGCTTCAATCACTCTGTTCGCCTTTAACCAAAAATCACTGGTAATATAGCC
TGAGACAGCGGAAGAGGAGAGGAGTAGCATGGGGGATCTATATGTGTGGCTCGTTTCATTCTTCTTTCTCATAGCTCTTCTGATTGTCCTTATATATCAGCTCATGTGCT
TGGCAGATCTCGAGTTTGATTATATCAACCCTTATGACTCTGCTTCTCGAATTAATAAAGTGATTTTTCCGGAGTTCATTTCTATGGGAGTTTTGTGCCTCTTCTATCTT
TTAACGGGGCATTGGGGTATGTCAATACTTTGTGGGCCCTACATATATTACAATGTATCTACGAAGACAGCACCTGATAGATGTTACAGAGATATTCAATATGCTAAACT
GGGAAAAGAAGCAACGGCTTTTCAAACTAGCCTATCTAGTTTTCCTCCTCTTCCTCTCTGTATTTTGACAAGAAAAAGAGATTGA
Protein sequenceShow/hide protein sequence
MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNVSTKTAPDRCYRDIQYAKLGKEATAFQT
SLSSFPPLPLCILTRKRD