CuGenDBv2

Gene ID	Carg21617
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ycf49-like protein
Genome location	Carg_Chr06:3958536..3962424
RNA-Seq Expression	Carg21617
Synteny	Carg21617
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR019634 - Uncharacterised protein family Ycf49

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596827.1 hypothetical protein SDJN03_10007, partial [Cucurbita argyrosperma subsp. sororia]

9.0e-82

87.92

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Query:  MSLTSTLFRSFSNPKCPISSSSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ
        MSLTSTLFRSFSNPKCPI  SSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ
Subjt:  MSLTSTLFRSFSNPKCPISSSSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ

Query:  FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGM-----------------------VLVALQAILTAVGNATMCIAAFRIYKAS
        FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGM                       VLVALQAILTAVGNATMCIAAFRIYKAS
Subjt:  FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGM-----------------------VLVALQAILTAVGNATMCIAAFRIYKAS

Query:  QERSSKL
        QERSSKL
Subjt:  QERSSKL

KAG7028356.1 hypothetical protein SDJN02_09537, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.4e-88

100

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Query:  MSLTSTLFRSFSNPKCPISSSSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ
        MSLTSTLFRSFSNPKCPISSSSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ
Subjt:  MSLTSTLFRSFSNPKCPISSSSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ

Query:  FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGMVLVALQAILTAVGNATMCIAAFRIYKASQERSSKL
        FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGMVLVALQAILTAVGNATMCIAAFRIYKASQERSSKL
Subjt:  FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGMVLVALQAILTAVGNATMCIAAFRIYKASQERSSKL

XP_022944188.1 uncharacterized protein LOC111448709 [Cucurbita moschata]

2.0e-81

87.44

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Query:  MSLTSTLFRSFSNPKCPISSSSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ
        MSLTSTLFRSFSNPKCPI   SSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ
Subjt:  MSLTSTLFRSFSNPKCPISSSSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ

Query:  FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGM-----------------------VLVALQAILTAVGNATMCIAAFRIYKAS
        FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGM                       VLVALQAILTAVGNATMCIAAFRIYKAS
Subjt:  FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGM-----------------------VLVALQAILTAVGNATMCIAAFRIYKAS

Query:  QERSSKL
        QERSSKL
Subjt:  QERSSKL

XP_023005556.1 uncharacterized protein LOC111498507 [Cucurbita maxima]

1.5e-76

84.54

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Query:  MSLTSTLFRSFSNPKCPISSSSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ
        MSLTSTL  SFSNPKCPI    SSSSSSSLPRSATDFAASSQALT IRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAAT AATELQSLGASSLQ
Subjt:  MSLTSTLFRSFSNPKCPISSSSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ

Query:  FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGM-----------------------VLVALQAILTAVGNATMCIAAFRIYKAS
        FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSG+ESWKGLSWGM                       VLVALQAILTAVGNATMCIAAFRIYKAS
Subjt:  FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGM-----------------------VLVALQAILTAVGNATMCIAAFRIYKAS

Query:  QERSSKL
        QERSSKL
Subjt:  QERSSKL

XP_023539827.1 uncharacterized protein LOC111800391 [Cucurbita pepo subsp. pepo]

2.1e-78

85.02

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Query:  MSLTSTLFRSFSNPKCPISSSSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ
        MSLTSTLF SFSNPKCPI    SSSSSSSLPRSATDFAASSQALT IRFPR IGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ
Subjt:  MSLTSTLFRSFSNPKCPISSSSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ

Query:  FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGM-----------------------VLVALQAILTAVGNATMCIAAFRIYKAS
        FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSG+ESWKGLSWGM                       VLVALQAILTAVGNATMCIAAFRIYKAS
Subjt:  FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGM-----------------------VLVALQAILTAVGNATMCIAAFRIYKAS

Query:  QERSSKL
        QERSSKL
Subjt:  QERSSKL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BLS2 ycf49-like protein

1.2e-47

61.84

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Query:  MSLTSTLFRSFSNPKCPISSSSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ
        MSLTS L  SFS PK P+  S             TDFA ++Q  T + F R I + L   SK MVVL+GTG TLALLGPESA   +AATELQ    SSL 
Subjt:  MSLTSTLFRSFSNPKCPISSSSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ

Query:  FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGM-----------------------VLVALQAILTAVGNATMCIAAFRIYKAS
        FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSG+ESWKGLSWGM                       VLVA+QA+LTA+GNATMCIAAFRIYK+S
Subjt:  FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGM-----------------------VLVALQAILTAVGNATMCIAAFRIYKAS

Query:  QERSSKL
        QERS  L
Subjt:  QERSSKL

A0A6J1DH09 uncharacterized protein LOC111020415

1.5e-61

72.46

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Query:  MSLTSTLFRSFSNPKCPISSSSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ
        M LTSTL  SFSNPKCPISSSSSSS     P  + DFAA S+    IRF RIIGAGL LDSK+MVVL+GTG TLALLGPESA   +AA ELQ+LGASSLQ
Subjt:  MSLTSTLFRSFSNPKCPISSSSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ

Query:  FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGM-----------------------VLVALQAILTAVGNATMCIAAFRIYKAS
        FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSG+E+WKGLSWGM                       VLVALQAILTAVGNATMCIAAFRIYK S
Subjt:  FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGM-----------------------VLVALQAILTAVGNATMCIAAFRIYKAS

Query:  QERSSKL
        QERS  L
Subjt:  QERSSKL

A0A6J1E5R7 uncharacterized protein LOC111431033

7.1e-48

62.32

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Query:  MSLTSTLFRSFSNPKCPISSSSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ
        MS +ST   SFS PKCPI     SSSSSSLP S    AA+SQ  T IR  R  GAG  LDSK+++VL+GTG TL+ LGP   A+ +AATE Q    SSL 
Subjt:  MSLTSTLFRSFSNPKCPISSSSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ

Query:  FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGM-----------------------VLVALQAILTAVGNATMCIAAFRIYKAS
        FNEPQNALSLPTWA+HVS VVEWI AMALVWQYGEKSG+ESWKGLSWGM                       VLVALQA+LT +GNATMCIAAFRIYK+S
Subjt:  FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGM-----------------------VLVALQAILTAVGNATMCIAAFRIYKAS

Query:  QERSSKL
        QERS  L
Subjt:  QERSSKL

A0A6J1FXT1 uncharacterized protein LOC111448709

9.7e-82

87.44

Show/hide

Query:  MSLTSTLFRSFSNPKCPISSSSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ
        MSLTSTLFRSFSNPKCPI   SSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ
Subjt:  MSLTSTLFRSFSNPKCPISSSSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ

Query:  FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGM-----------------------VLVALQAILTAVGNATMCIAAFRIYKAS
        FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGM                       VLVALQAILTAVGNATMCIAAFRIYKAS
Subjt:  FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGM-----------------------VLVALQAILTAVGNATMCIAAFRIYKAS

Query:  QERSSKL
        QERSSKL
Subjt:  QERSSKL

A0A6J1KVA7 uncharacterized protein LOC111498507

7.2e-77

84.54

Show/hide

Query:  MSLTSTLFRSFSNPKCPISSSSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ
        MSLTSTL  SFSNPKCPI    SSSSSSSLPRSATDFAASSQALT IRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAAT AATELQSLGASSLQ
Subjt:  MSLTSTLFRSFSNPKCPISSSSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQ

Query:  FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGM-----------------------VLVALQAILTAVGNATMCIAAFRIYKAS
        FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSG+ESWKGLSWGM                       VLVALQAILTAVGNATMCIAAFRIYKAS
Subjt:  FNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGM-----------------------VLVALQAILTAVGNATMCIAAFRIYKAS

Query:  QERSSKL
        QERSSKL
Subjt:  QERSSKL

SwissProt top hits

e value

%identity

Alignment

Q55720 Ycf49-like protein

1.2e-15

Show/hide

Query:  NALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGMV-----------------------LVALQAILTAVGNATMCIAAFRIYKASQERSS
        NALS+PTW +HVSSV+EWI A+ALV +Y  K+G   W+ L+WGMV                       LV LQA+ T +GN T+C+AA+ IY+ S + S+
Subjt:  NALSLPTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGMV-----------------------LVALQAILTAVGNATMCIAAFRIYKASQERSS

Arabidopsis top hits

e value

%identity

Alignment

AT4G22830.1 unknown protein

8.6e-30

48.28

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Query:  RSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALL---GPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWITAMA
        R A+    S++ + RIR   +I   +AL       LIGT L  A     GP++ A  A           SLQ +EP NALSLPTWA+HVSSVVEWITAMA
Subjt:  RSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALL---GPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWITAMA

Query:  LVWQYGEKSGDESWKGLSWGM-----------------------VLVALQAILTAVGNATMCIAAFRIYKASQE
        LVW+YGE+ G ESWKGLSWGM                       VLVALQA LT  GN T+CIAAFRI K S +
Subjt:  LVWQYGEKSGDESWKGLSWGM-----------------------VLVALQAILTAVGNATMCIAAFRIYKASQE

AT4G22830.2 unknown protein

9.5e-29

48.31

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Query:  SSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALL---GPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWI
        +S P S T    S++ + RIR   +I   +AL       LIGT L  A     GP++ A  A           SLQ +EP NALSLPTWA+HVSSVVEWI
Subjt:  SSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALL---GPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWI

Query:  TAMALVWQYGEKSGDESWKGLSWGM-----------------------VLVALQAILTAVGNATMCIAAFRIYKASQE
        TAMALVW+YGE+ G ESWKGLSWGM                       VLVALQA LT  GN T+CIAAFRI K S +
Subjt:  TAMALVWQYGEKSGDESWKGLSWGM-----------------------VLVALQAILTAVGNATMCIAAFRIYKASQE

Sequences

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CDS sequence

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ATGTCACTCACCTCCACCTTGTTCCGTTCCTTTTCAAATCCCAAATGCCCCATTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCGTTGCCGAGGTCGGCGACAGATTT
TGCTGCTTCTTCTCAAGCTCTGACTCGAATTCGATTTCCGAGGATTATCGGCGCCGGTCTGGCTTTGGACTCGAAAACTATGGTGGTTTTGATCGGCACGGGCTTGACTC
TTGCTCTTCTGGGACCTGAATCGGCTGCTGCTACTGCTGCTGCAACGGAATTGCAGTCGTTGGGTGCTTCTTCGCTGCAGTTTAATGAACCCCAAAATGCTCTGTCCTTG
CCCACCTGGGCTATACATGTTTCCAGTGTTGTTGAATGGATTACAGCAATGGCTTTGGTGTGGCAATATGGAGAGAAATCTGGCGATGAGTCTTGGAAGGGACTTTCTTG
GGGAATGGTTTTGGTGGCCCTTCAGGCAATACTGACGGCTGTAGGAAATGCCACAATGTGCATTGCTGCATTTCGCATATACAAAGCATCACAAGAACGTTCAAGTAAGT
TGTAA

mRNA sequence

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Protein sequence

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MSLTSTLFRSFSNPKCPISSSSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSL
PTWAIHVSSVVEWITAMALVWQYGEKSGDESWKGLSWGMVLVALQAILTAVGNATMCIAAFRIYKASQERSSKL

Carg21617 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome