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Carg21662 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21662
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor PRE5-like
Genome locationCarg_Chr01:4391948..4392866
RNA-Seq ExpressionCarg21662
SyntenyCarg21662
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044172 - Transcription factor ILI2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607436.1 Transcription factor PRE4, partial [Cucurbita argyrosperma subsp. sororia]2.4e-3294.74Show/hide
Query:  MASSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLGVDLEMVK
        MASSKFRDD+IKNLVLKLHTL PQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLE +GVDLEMVK
Subjt:  MASSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLGVDLEMVK

KAG7020038.1 Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]8.7e-1965.79Show/hide
Query:  MASSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLGVDLEMVK
        MASS   DD+++NL+ +L TL PQLNH    S V  AEILKETCD IKKL+RE+DDLSERLW+QL+ +GVD EMVK
Subjt:  MASSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLGVDLEMVK

KAG7037094.1 Transcription factor PRE4 [Cucurbita argyrosperma subsp. argyrosperma]6.2e-41100Show/hide
Query:  MASSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLGVDLEMVKDFFSPKISSS
        MASSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLGVDLEMVKDFFSPKISSS
Subjt:  MASSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLGVDLEMVKDFFSPKISSS

XP_008440200.1 PREDICTED: transcription factor PRE5-like [Cucumis melo]6.0e-2069.23Show/hide
Query:  MASSKFRDDEIKNLVLKLHTLPPQLNHKFDH-SKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLGVDLEMVKD
        MASSK  D+E+KNLV KL TL PQLNHK D+ S+    EILKETCD IKKL++E+DDLSERLW+QL+ +GVD EMVKD
Subjt:  MASSKFRDDEIKNLVLKLHTLPPQLNHKFDH-SKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLGVDLEMVKD

XP_011649678.1 transcription factor PRE5 [Cucumis sativus]3.2e-2169.14Show/hide
Query:  MASSKFRDDEIKNLVLKLHTLPPQLNHK-FDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLGVDLEMVKDFFS
        MASSK  DDE+KNLV KL TL PQLNHK  + S+V   EILKETCD IKKL+RE+DDLSERLW+QL+ +G+D EMVKD  S
Subjt:  MASSKFRDDEIKNLVLKLHTLPPQLNHK-FDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLGVDLEMVKDFFS

TrEMBL top hitse value%identityAlignment
A0A0A0LQ05 DNA binding protein1.5e-2169.14Show/hide
Query:  MASSKFRDDEIKNLVLKLHTLPPQLNHK-FDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLGVDLEMVKDFFS
        MASSK  DDE+KNLV KL TL PQLNHK  + S+V   EILKETCD IKKL+RE+DDLSERLW+QL+ +G+D EMVKD  S
Subjt:  MASSKFRDDEIKNLVLKLHTLPPQLNHK-FDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLGVDLEMVKDFFS

A0A1S3B0J1 transcription factor PRE5-like2.9e-2069.23Show/hide
Query:  MASSKFRDDEIKNLVLKLHTLPPQLNHKFDH-SKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLGVDLEMVKD
        MASSK  D+E+KNLV KL TL PQLNHK D+ S+    EILKETCD IKKL++E+DDLSERLW+QL+ +GVD EMVKD
Subjt:  MASSKFRDDEIKNLVLKLHTLPPQLNHKFDH-SKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLGVDLEMVKD

A0A498JMP9 BHLH domain-containing protein2.0e-0850.65Show/hide
Query:  SSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLG---VDLEMVK
        +SK  DDEIK LVLKL  L PQL+H   ++ V  + IL+ETC  IK+L RE++DLS+RL E L+  G   VD E+++
Subjt:  SSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLG---VDLEMVK

A0A5A7SZP9 Transcription factor PRE5-like2.9e-2069.23Show/hide
Query:  MASSKFRDDEIKNLVLKLHTLPPQLNHKFDH-SKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLGVDLEMVKD
        MASSK  D+E+KNLV KL TL PQLNHK D+ S+    EILKETCD IKKL++E+DDLSERLW+QL+ +GVD EMVKD
Subjt:  MASSKFRDDEIKNLVLKLHTLPPQLNHKFDH-SKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLGVDLEMVKD

A0A5D3BKI2 Transcription factor PRE5-like2.1e-1868Show/hide
Query:  MASSKFRDDEIKNLVLKLHTLPPQLNHKFDH-SKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLGVDLEM
        MASSK  D+E+KNLV KL TL PQLNHK D+ S+    EILKETCD IKKL++E+DDLSERLW+QL+ +GVD EM
Subjt:  MASSKFRDDEIKNLVLKLHTLPPQLNHKFDH-SKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLGVDLEM

SwissProt top hitse value%identityAlignment
A2Z730 Transcription factor ILI74.6e-0743.75Show/hide
Query:  ASSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQL
        ++++  D++I +LV KL  L P+   +  + +VP A +L+ETC  I+ L RE+DDLSERL E L
Subjt:  ASSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQL

F4JCN9 Transcription factor PRE42.5e-0845.31Show/hide
Query:  SSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLE
        +S   D++I +LVL+LH L P+L +     KV  + +L+ETC  I+ L +E+DDLSERL + LE
Subjt:  SSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLE

Q8GW32 Transcription factor PRE61.6e-0747.62Show/hide
Query:  SSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQL
        SS+  DD+I +LV KL  L P+L  +    KV  +++L+ETC+ I+ L RE+DDLS+RL E L
Subjt:  SSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQL

Q9CA64 Transcription factor PRE33.2e-0844.44Show/hide
Query:  SSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQL
        +S+  +D+I +L++KL  L P+L       KV  A +L++TC+ I+ L RE+DDLSERL E L
Subjt:  SSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQL

Q9LJX1 Transcription factor PRE52.1e-0737.68Show/hide
Query:  SSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLGVD
        +S+  DD++ +LV KL    P+++ +    KV  +++L+ETC+ I+KL RE+D+LS+RL + L+ +  D
Subjt:  SSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLGVD

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.1e-0847.62Show/hide
Query:  SSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQL
        SS+  DD+I +LV KL  L P+L  +    KV  +++L+ETC+ I+ L RE+DDLS+RL E L
Subjt:  SSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 12.3e-0944.44Show/hide
Query:  SSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQL
        +S+  +D+I +L++KL  L P+L       KV  A +L++TC+ I+ L RE+DDLSERL E L
Subjt:  SSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.5e-0837.68Show/hide
Query:  SSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLGVD
        +S+  DD++ +LV KL    P+++ +    KV  +++L+ETC+ I+KL RE+D+LS+RL + L+ +  D
Subjt:  SSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLGVD

AT3G47710.1 BANQUO 31.7e-0945.31Show/hide
Query:  SSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLE
        +S   D++I +LVL+LH L P+L +     KV  + +L+ETC  I+ L +E+DDLSERL + LE
Subjt:  SSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLE

AT5G15160.1 BANQUO 29.6e-0837.31Show/hide
Query:  ASSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPL
        +SS+  DD+I +L+ KL    P++      + V  +++L+ETC+ I+ L +E DDLS+RL + LE +
Subjt:  ASSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTCCAAATTTCGCGACGACGAGATTAAAAATCTTGTCTTGAAATTGCACACTTTGCCTCCTCAGCTCAACCATAAGTTCGACCACTCCAAGGTACCAATAGC
AGAGATTTTGAAAGAGACGTGTGATTGTATAAAAAAATTAGAGAGGGAGATAGACGATCTAAGTGAGAGGCTATGGGAGCAGCTCGAGCCACTGGGAGTTGACTTAGAAA
TGGTTAAAGATTTCTTCTCACCTAAAATTTCTAGCTCGTAA
mRNA sequenceShow/hide mRNA sequence
TCACCAAAAACCATTCATCATTATTGTTTCAACTTCCTTCCTTCATTCATTTATGGCTTCCTCCAAATTTCGCGACGACGAGATTAAAAATCTTGTCTTGAAATTGCACA
CTTTGCCTCCTCAGCTCAACCATAAGTTCGACCACTCCAAGGTACCAATAGCAGAGATTTTGAAAGAGACGTGTGATTGTATAAAAAAATTAGAGAGGGAGATAGACGAT
CTAAGTGAGAGGCTATGGGAGCAGCTCGAGCCACTGGGAGTTGACTTAGAAATGGTTAAAGATTTCTTCTCACCTAAAATTTCTAGCTCGTAATTCAATATTTGAAATTT
GGATAAAATTTTAAACACGAAATTGTCTTAATTAGAATTTAAATGCATTATAAAACAACAAAGGATATCAATTATTGGACGTGCTTTATGCATAAAATAGAGTCAACTTA
TTAGGAGAGTTAAAAAATAGTATTTATATGATATATATAGATTTTTGTTGACTTCTATTTGAATTAGGTCAAAAGAGGATTGAATTGAGCTAAACTATGATCTCACAAAT
TGGAGACACAACTCTAAGGTCGATCTCGTCTTCAAGCTATGGCCGATAGAGAACTCGTGCTTCATCTCAAGTTTCTCTTCTCTCACCTATTTGGTGGCTTGGATTTCTTC
TTGTATTAGACTTTTTTTCTTTATTTTGTCTTTGAACTACGTGATCTATTATGTTTGTCCATGATCTTTTATATTTGTTCTTGTAATCTAATTCCACCCATAAACAAATG
ACGAGAAATAGAAAAATATTAGCGT
Protein sequenceShow/hide protein sequence
MASSKFRDDEIKNLVLKLHTLPPQLNHKFDHSKVPIAEILKETCDCIKKLEREIDDLSERLWEQLEPLGVDLEMVKDFFSPKISSS