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Carg21724 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21724
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTransmembrane protein
Genome locationCarg_Chr01:4777023..4778869
RNA-Seq ExpressionCarg21724
SyntenyCarg21724
Gene Ontology termsGO:0006414 - translational elongation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003746 - translation elongation factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592381.1 hypothetical protein SDJN03_14727, partial [Cucurbita argyrosperma subsp. sororia]6.7e-3975.59Show/hide
Query:  LRTNSDQIILLEKAAEIGEGMSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAK--DGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKK
        L  N +Q ILL+  AEIGEGMSRS+SS SLQFLSFL SLSLHSLSVLA +HSSA+  DGK KK D  +S S GIK+++ICLGVVT IAFSVIL K+WQ+K
Subjt:  LRTNSDQIILLEKAAEIGEGMSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAK--DGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKK

Query:  KREEQHARLLKLFEDDDELEVELGLRD
        KREEQHARLLKLFEDDDELE+ELGLRD
Subjt:  KREEQHARLLKLFEDDDELEVELGLRD

KAG6607498.1 hypothetical protein SDJN03_00840, partial [Cucurbita argyrosperma subsp. sororia]1.1e-46100Show/hide
Query:  MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVE
        MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVE
Subjt:  MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVE

Query:  LGLRD
        LGLRD
Subjt:  LGLRD

KAG7037155.1 hypothetical protein SDJN02_00777, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-85100Show/hide
Query:  MGIPPEKQTQGNCGSEGLSSSLTPTLGESVTIEGICGIEIDIPIFLLRTNSDQIILLEKAAEIGEGMSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSA
        MGIPPEKQTQGNCGSEGLSSSLTPTLGESVTIEGICGIEIDIPIFLLRTNSDQIILLEKAAEIGEGMSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSA
Subjt:  MGIPPEKQTQGNCGSEGLSSSLTPTLGESVTIEGICGIEIDIPIFLLRTNSDQIILLEKAAEIGEGMSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSA

Query:  KDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD
        KDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD
Subjt:  KDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD

XP_022949107.1 uncharacterized protein LOC111452561 [Cucurbita moschata]3.7e-4598.1Show/hide
Query:  MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVE
        MSRSRSSISLQ LSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAF VILFKLWQKKKREEQHARLLKLFEDDDELEVE
Subjt:  MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVE

Query:  LGLRD
        LGLRD
Subjt:  LGLRD

XP_023525282.1 uncharacterized protein LOC111788931 [Cucurbita pepo subsp. pepo]1.7e-4599.05Show/hide
Query:  MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVE
        MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAKDGKTKK DAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVE
Subjt:  MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVE

Query:  LGLRD
        LGLRD
Subjt:  LGLRD

TrEMBL top hitse value%identityAlignment
A0A1S3CA76 uncharacterized protein LOC1034987104.6e-3381.31Show/hide
Query:  MSRSRSSISLQFLSFLLS-LSLHSLSVLAGDHSSAKD-GKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELE
        MS S+SS SLQFL FL + + LHSLSVLA D+SSAKD GKTKK D  +SPS GIK+LIICLGVVT IAFSVILFK+WQKKKREEQHARLLKLFEDDDELE
Subjt:  MSRSRSSISLQFLSFLLS-LSLHSLSVLAGDHSSAKD-GKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELE

Query:  VELGLRD
        VELGLRD
Subjt:  VELGLRD

A0A5A7TC90 Uncharacterized protein4.6e-3381.31Show/hide
Query:  MSRSRSSISLQFLSFLLS-LSLHSLSVLAGDHSSAKD-GKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELE
        MS S+SS SLQFL FL + + LHSLSVLA D+SSAKD GKTKK D  +SPS GIK+LIICLGVVT IAFSVILFK+WQKKKREEQHARLLKLFEDDDELE
Subjt:  MSRSRSSISLQFLSFLLS-LSLHSLSVLAGDHSSAKD-GKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELE

Query:  VELGLRD
        VELGLRD
Subjt:  VELGLRD

A0A6J1EBZ0 uncharacterized protein LOC1114326781.0e-3278.5Show/hide
Query:  MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAK--DGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELE
        MSRS+SS SLQFLSFL SLSLHSLSVLA +HSSA+  DGK KK D  +S S GIK+++ICLGVVT IAFSVIL K+WQ+KKREEQHARLLKLFEDDDELE
Subjt:  MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAK--DGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELE

Query:  VELGLRD
        +ELGLRD
Subjt:  VELGLRD

A0A6J1GB46 uncharacterized protein LOC1114525611.8e-4598.1Show/hide
Query:  MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVE
        MSRSRSSISLQ LSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAF VILFKLWQKKKREEQHARLLKLFEDDDELEVE
Subjt:  MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVE

Query:  LGLRD
        LGLRD
Subjt:  LGLRD

A0A6J1ICT0 uncharacterized protein LOC1114726071.7e-3277.57Show/hide
Query:  MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAK--DGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELE
        MSRS+SS SLQFLSFL SLSLHSLSVLA +HSSA+  DGK KK D  +S S GIK+++ICLGVVT +AFSVIL K+WQ+KKREEQHARLLKLFEDDDELE
Subjt:  MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAK--DGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELE

Query:  VELGLRD
        +ELGLRD
Subjt:  VELGLRD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G09645.1 unknown protein1.6e-1751.52Show/hide
Query:  ISLQFLSFLLSLSLHSLSVLAGDHSSAKDG-KTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD
        +S + L F  S+ L     L+GD  +   G KT+ H +  S  TG K++++ +G V    FS  L+KLWQKKKR+EQ+ARLLKLFE+DDELEVELGLRD
Subjt:  ISLQFLSFLLSLSLHSLSVLAGDHSSAKDG-KTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD

AT1G57765.1 unknown protein7.7e-1750.96Show/hide
Query:  SRSSISLQFLSFLL--SLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVEL
        S S+I+L +   LL  S+ LH    ++GD +S+  G  K      S  TG K++ I LG       S  L+KLWQKKKR+EQ+ARLLKLFE+DDELEVEL
Subjt:  SRSSISLQFLSFLL--SLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVEL

Query:  GLRD
        GLRD
Subjt:  GLRD

AT1G57765.2 unknown protein5.0e-1652.48Show/hide
Query:  SSISLQFLSFLLSLSLHSL-SVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLR
        +SI L F  FL  L L S+   ++GD +S+  G  K      S  TG K++ I LG       S  L+KLWQKKKR+EQ+ARLLKLFE+DDELEVELGLR
Subjt:  SSISLQFLSFLLSLSLHSL-SVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLR

Query:  D
        D
Subjt:  D

AT3G53490.1 unknown protein2.5e-0739.73Show/hide
Query:  SAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD
        S K+  T+K +       GI +LI+ L +       ++ +K W+KKKR+++ AR LKLFED D++E ELGL +
Subjt:  SAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCATCCCGCCTGAAAAACAAACACAAGGAAACTGCGGGAGTGAGGGATTGTCCTCCTCACTGACCCCGACGTTAGGTGAATCAGTCACGATAGAGGGAATTTGTGG
GATTGAGATTGATATTCCAATTTTTCTTCTTCGAACAAATTCCGACCAAATCATCCTCCTCGAGAAAGCTGCAGAGATCGGCGAAGGGATGTCTCGATCTCGAAGCTCCA
TATCTCTGCAATTCCTCTCTTTCCTTCTCTCCCTCTCTCTCCATTCTCTTTCAGTGTTGGCAGGTGATCATTCAAGTGCTAAAGATGGTAAAACTAAAAAGCACGATGCT
CCGAAGAGTCCATCAACAGGGATCAAGATGCTAATCATATGTCTAGGTGTGGTGACTTTCATTGCGTTCTCTGTGATTCTATTCAAATTATGGCAAAAGAAGAAGAGAGA
AGAACAGCATGCCCGTCTTCTCAAGCTGTTTGAAGATGACGATGAACTCGAAGTCGAACTTGGCCTTCGGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCATCCCGCCTGAAAAACAAACACAAGGAAACTGCGGGAGTGAGGGATTGTCCTCCTCACTGACCCCGACGTTAGGTGAATCAGTCACGATAGAGGGAATTTGTGG
GATTGAGATTGATATTCCAATTTTTCTTCTTCGAACAAATTCCGACCAAATCATCCTCCTCGAGAAAGCTGCAGAGATCGGCGAAGGGATGTCTCGATCTCGAAGCTCCA
TATCTCTGCAATTCCTCTCTTTCCTTCTCTCCCTCTCTCTCCATTCTCTTTCAGTGTTGGCAGGTGATCATTCAAGTGCTAAAGATGGTAAAACTAAAAAGCACGATGCT
CCGAAGAGTCCATCAACAGGGATCAAGATGCTAATCATATGTCTAGGTGTGGTGACTTTCATTGCGTTCTCTGTGATTCTATTCAAATTATGGCAAAAGAAGAAGAGAGA
AGAACAGCATGCCCGTCTTCTCAAGCTGTTTGAAGATGACGATGAACTCGAAGTCGAACTTGGCCTTCGGGATTGA
Protein sequenceShow/hide protein sequence
MGIPPEKQTQGNCGSEGLSSSLTPTLGESVTIEGICGIEIDIPIFLLRTNSDQIILLEKAAEIGEGMSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDA
PKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD