; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg21806 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21806
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial
Genome locationCarg_Chr05:32290..33287
RNA-Seq ExpressionCarg21806
SyntenyCarg21806
Gene Ontology termsGO:0030488 - tRNA methylation (biological process)
GO:0070475 - rRNA base methylation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0008173 - RNA methyltransferase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR043459 - NFD6/NOXY2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029191.1 hypothetical protein SDJN02_07528, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-79100Show/hide
Query:  TQAQFGTAQGNSIGLVFVPEVYQIAPLPLLTSKLSLHTDSQPNMAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSV
        TQAQFGTAQGNSIGLVFVPEVYQIAPLPLLTSKLSLHTDSQPNMAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSV
Subjt:  TQAQFGTAQGNSIGLVFVPEVYQIAPLPLLTSKLSLHTDSQPNMAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSV

Query:  PKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEGNLSTLLPCVNVKLRY
        PKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEGNLSTLLPCVNVKLRY
Subjt:  PKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEGNLSTLLPCVNVKLRY

XP_022159141.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Momordica charantia]8.9e-3382.69Show/hide
Query:  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGC
        MAAC TWKTLR+SSSS RTL+ RSSSS  SASH VS+PT    LPSAKP+AS RFSV KLTN RLPVELSSVQSLMPLHS TASALFTSLLSLHNNSWGC
Subjt:  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGC

Query:  LSEG
        LSEG
Subjt:  LSEG

XP_022961783.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita moschata]6.0e-45100Show/hide
Query:  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGC
        MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGC
Subjt:  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGC

Query:  LSEG
        LSEG
Subjt:  LSEG

XP_022996536.1 uncharacterized protein LOC111491756 isoform X2 [Cucurbita maxima]3.6e-4299.03Show/hide
Query:  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGC
        MAACSTWKTLRISSSSARTLLQRSSSS PSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGC
Subjt:  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGC

Query:  LSE
        LSE
Subjt:  LSE

XP_038885251.1 protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X2 [Benincasa hispida]8.6e-3689.42Show/hide
Query:  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGC
        MAAC +WKTLRISSSSARTLL RSSSS PSASH VSKPTMSA LPSAKP ASSRF V KLTNFRLPVELSSVQSLMPLHS TASALFTSLLSLHNNSWG 
Subjt:  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGC

Query:  LSEG
        LSEG
Subjt:  LSEG

TrEMBL top hitse value%identityAlignment
A0A0A0L605 Radical_SAM domain-containing protein6.9e-3179.61Show/hide
Query:  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGC
        MAAC +WKT+ ISSSSAR LL RSSSS PSASH VS PTMS  LPSAKP ASSRFSV +LTNFRLPVEL+S+QSLMPL S TAS LFTSLLS HNNSWGC
Subjt:  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGC

Query:  LSE
        LS+
Subjt:  LSE

A0A5D3D8K9 Dual-specificity RNA methyltransferase RlmN isoform X11.8e-2674.76Show/hide
Query:  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGC
        MAAC +WKT+ ISSSSAR LL R SSS PSASH VS PTMS  L SA+P+ASSRFSV +LTNF LPVEL+S+QSLMPL S TASALFTSLLS HNNS  C
Subjt:  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGC

Query:  LSE
        LS+
Subjt:  LSE

A0A6J1E309 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial4.3e-3382.69Show/hide
Query:  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGC
        MAAC TWKTLR+SSSS RTL+ RSSSS  SASH VS+PT    LPSAKP+AS RFSV KLTN RLPVELSSVQSLMPLHS TASALFTSLLSLHNNSWGC
Subjt:  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGC

Query:  LSEG
        LSEG
Subjt:  LSEG

A0A6J1HCT7 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial2.9e-45100Show/hide
Query:  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGC
        MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGC
Subjt:  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGC

Query:  LSEG
        LSEG
Subjt:  LSEG

A0A6J1K524 uncharacterized protein LOC111491756 isoform X21.7e-4299.03Show/hide
Query:  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGC
        MAACSTWKTLRISSSSARTLLQRSSSS PSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGC
Subjt:  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGC

Query:  LSE
        LSE
Subjt:  LSE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G55205.1 unknown protein7.6e-0642.39Show/hide
Query:  SSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKP-SASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEG
        SS   +L Q+ S    +  H+ S P   +P+ S+ P SA+SR +     +FRLPVELS   S++PLHSA ASA   S LS+ + SWG + +G
Subjt:  SSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKP-SASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEG

AT1G55205.2 unknown protein7.6e-0642.39Show/hide
Query:  SSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKP-SASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEG
        SS   +L Q+ S    +  H+ S P   +P+ S+ P SA+SR +     +FRLPVELS   S++PLHSA ASA   S LS+ + SWG + +G
Subjt:  SSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKP-SASSRFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEG

AT1G70350.1 unknown protein4.9e-1351.82Show/hide
Query:  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASS-RFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWG
        MAA    + L+ SSSS + L  RS     SA+   SK   SA +     S+SS R S+ +LT  R+PVELS+  SL+PLHS TASAL TSLLSL N +W 
Subjt:  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASS-RFSVPKLTNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWG

Query:  CLSEGNLSTL
        CLSEG  STL
Subjt:  CLSEGNLSTL

AT2G20585.1 nuclear fusion defective 61.1e-0443.48Show/hide
Query:  SSARTLLQRSSSSPPSAS--HLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELS-SVQSLMPLHSATASALFTSLLSLHNNSWGCLSE
        S AR++L+ +SS   +AS     S+   + PL  A    S     P L+  R PVELS  V+SL+P HSATASAL TS LS+   ++G LS+
Subjt:  SSARTLLQRSSSSPPSAS--HLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELS-SVQSLMPLHSATASALFTSLLSLHNNSWGCLSE

AT2G20585.3 nuclear fusion defective 62.2e-0544.09Show/hide
Query:  SSARTLLQRSSSSPPSAS--HLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELS-SVQSLMPLHSATASALFTSLLSLHNNSWGCLSEG
        S AR++L+ +SS   +AS     S+   + PL  A    S     P L+  R PVELS  V+SL+P HSATASAL TS LS+   ++G LS+G
Subjt:  SSARTLLQRSSSSPPSAS--HLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPVELS-SVQSLMPLHSATASALFTSLLSLHNNSWGCLSEG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACGCAGGCCCAGTTTGGAACAGCCCAAGGAAACTCCATAGGCTTAGTTTTCGTCCCAGAGGTCTATCAGATCGCTCCTCTTCCACTTCTTACTTCCAAGCTCTCGCTTCA
CACAGACAGCCAACCAAATATGGCGGCTTGCTCTACCTGGAAAACCCTACGAATTTCCTCCTCTTCCGCAAGAACCCTCCTTCAACGTTCCTCCTCCTCCCCCCCCTCTG
CGTCTCATCTTGTGTCCAAACCTACGATGTCTGCGCCACTTCCTTCTGCAAAGCCGTCCGCATCTTCCCGCTTCTCTGTTCCGAAGCTTACCAACTTCAGGCTTCCAGTG
GAGTTGTCAAGCGTGCAGTCTCTAATGCCATTGCACAGTGCTACTGCTTCTGCCTTGTTTACTTCCCTGCTTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAAGG
TAACCTTTCTACCTTACTTCCTTGCGTCAATGTTAAATTACGCTATTAG
mRNA sequenceShow/hide mRNA sequence
ACGCAGGCCCAGTTTGGAACAGCCCAAGGAAACTCCATAGGCTTAGTTTTCGTCCCAGAGGTCTATCAGATCGCTCCTCTTCCACTTCTTACTTCCAAGCTCTCGCTTCA
CACAGACAGCCAACCAAATATGGCGGCTTGCTCTACCTGGAAAACCCTACGAATTTCCTCCTCTTCCGCAAGAACCCTCCTTCAACGTTCCTCCTCCTCCCCCCCCTCTG
CGTCTCATCTTGTGTCCAAACCTACGATGTCTGCGCCACTTCCTTCTGCAAAGCCGTCCGCATCTTCCCGCTTCTCTGTTCCGAAGCTTACCAACTTCAGGCTTCCAGTG
GAGTTGTCAAGCGTGCAGTCTCTAATGCCATTGCACAGTGCTACTGCTTCTGCCTTGTTTACTTCCCTGCTTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAAGG
TAACCTTTCTACCTTACTTCCTTGCGTCAATGTTAAATTACGCTATTAGAACATGCGATAAATTTATAGAATTGCCTTGCAATTGTGTTGACCTTTAATTTCTGAGTTTC
TATATTAAATTACGCTATTAGA
Protein sequenceShow/hide protein sequence
TQAQFGTAQGNSIGLVFVPEVYQIAPLPLLTSKLSLHTDSQPNMAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRLPV
ELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEGNLSTLLPCVNVKLRY