CuGenDBv2

Gene ID	Carg21808
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Nucleic acid-binding, OB-fold-like protein
Genome location	Carg_Chr05:40976..42881
RNA-Seq Expression	Carg21808
Synteny	Carg21808
Gene Ontology terms	NA
InterPro domains	IPR012340 - Nucleic acid-binding, OB-fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7029193.1 hypothetical protein SDJN02_07530 [Cucurbita argyrosperma subsp. argyrosperma]

2.9e-69

100

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Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE

XP_004142984.1 uncharacterized protein At4g28440 [Cucumis sativus]

4.7e-67

97.08

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Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTL VKVVN KMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEG TITLRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVEVTEPA FTVKEDNNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE

XP_022961781.1 uncharacterized protein At4g28440-like [Cucurbita moschata]

8.5e-69

99.27

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Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEG TITLRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE

XP_022996548.1 uncharacterized protein At4g28440-like [Cucurbita maxima]

1.9e-68

98.54

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Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEG TITLRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNV+EE
Subjt:  AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE

XP_038883981.1 uncharacterized protein At4g28440 [Benincasa hispida]

3.6e-67

96.35

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Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTK+DQLRPGTSGHTL VKVVN KMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEG TITLRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVEVTEPA FTVKEDNNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LNA1 Uncharacterized protein

2.3e-67

97.08

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Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTL VKVVN KMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEG TITLRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVEVTEPA FTVKEDNNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE

A0A1S3BA24 uncharacterized protein At4g28440 isoform X1

2.3e-67

97.08

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Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTL VKVVN KMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEG TITLRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVEVTEPA FTVKEDNNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE

A0A5A7V0K6 Nucleic acid-binding protein

2.3e-67

97.08

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Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTL VKVVN KMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEG TITLRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVEVTEPA FTVKEDNNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE

A0A6J1HBA7 uncharacterized protein At4g28440-like

4.1e-69

99.27

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Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEG TITLRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE

A0A6J1KB77 uncharacterized protein At4g28440-like

9.2e-69

98.54

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Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEG TITLRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNV+EE
Subjt:  AVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE

SwissProt top hits

e value

%identity

Alignment

O49453 Uncharacterized protein At4g28440

1.3e-43

65.91

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Query:  RKPVFTKVDQLRPGTSGHTLIVKVVNAKMVL---QKGRPDGPQAR---QMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRLAV
        RKPVF KV+QL+PGT+GHTL VKV+ A +V+   +K RP    +R     RI ECL+GDETG I+FTARNDQVDLMK G T+ LRN++IDMFKG+MRL V
Subjt:  RKPVFTKVDQLRPGTSGHTLIVKVVNAKMVL---QKGRPDGPQAR---QMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRLAV

Query:  DRWGRVEVTEPAAFTVKEDNNLSLIEYELVNV
        D+WGR+E T  A+FTVKEDNNLSL+EYEL+NV
Subjt:  DRWGRVEVTEPAAFTVKEDNNLSLIEYELVNV

Arabidopsis top hits

e value

%identity

Alignment

AT1G10590.1 Nucleic acid-binding, OB-fold-like protein

1.5e-55

78.83

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Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQK--GRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSM
        MAE+   LRKPVFTKV++LRPGT+GH+L VKVVN KMV+Q+  GRP GPQ+RQMRIAECLVGDETG+IIFTARNDQVD+MKEG  +TLRNAKIDM+KGSM
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQK--GRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSM

Query:  RLAVDRWGRVEVT-EPAAFTVKEDNNLSLIEYELVNV
        RLAVDRWGRVEV  EP   TVK+DNNLSLIEYELV+V
Subjt:  RLAVDRWGRVEVT-EPAAFTVKEDNNLSLIEYELVNV

AT1G10590.2 Nucleic acid-binding, OB-fold-like protein

1.5e-55

78.83

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Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQK--GRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSM
        MAE+   LRKPVFTKV++LRPGT+GH+L VKVVN KMV+Q+  GRP GPQ+RQMRIAECLVGDETG+IIFTARNDQVD+MKEG  +TLRNAKIDM+KGSM
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQK--GRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSM

Query:  RLAVDRWGRVEVT-EPAAFTVKEDNNLSLIEYELVNV
        RLAVDRWGRVEV  EP   TVK+DNNLSLIEYELV+V
Subjt:  RLAVDRWGRVEVT-EPAAFTVKEDNNLSLIEYELVNV

AT1G10590.3 Nucleic acid-binding, OB-fold-like protein

1.5e-55

78.83

Show/hide

Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQK--GRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSM
        MAE+   LRKPVFTKV++LRPGT+GH+L VKVVN KMV+Q+  GRP GPQ+RQMRIAECLVGDETG+IIFTARNDQVD+MKEG  +TLRNAKIDM+KGSM
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQK--GRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSM

Query:  RLAVDRWGRVEVT-EPAAFTVKEDNNLSLIEYELVNV
        RLAVDRWGRVEV  EP   TVK+DNNLSLIEYELV+V
Subjt:  RLAVDRWGRVEVT-EPAAFTVKEDNNLSLIEYELVNV

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein

1.6e-60

81.75

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Query:  MAES-KPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMR
        MA+S K GL+KP FTKVDQLRPGTSGH + VK+V+ KMVLQKGR DGPQARQ+RI+EC+VGDETG+I+FTARNDQVDLMKEG T+TLRNAKIDM+KGSMR
Subjt:  MAES-KPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMR

Query:  LAVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVE
        LAVD+WGRVEVTEPA+F VKED N+SLIEYELVNVVE
Subjt:  LAVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVE

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein

6.1e-49

73.85

Show/hide

Query:  RKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQK-GRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRLAVDRWGR
        +KPVF KVDQL+PGTSGHTL VKVV+   V QK G       R  RI+ECLVGDET  I+FTARNDQV+LMK G T+ LRNAKIDMFKGSMRLAVD+WGR
Subjt:  RKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQK-GRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRLAVDRWGR

Query:  VEVTEPAAFTVKEDNNLSLIEYELVNVVEE
        +E TEPA  TVKEDNNLSL+EYELVNVVEE
Subjt:  VEVTEPAAFTVKEDNNLSLIEYELVNVVEE

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCAGAATCAAAACCTGGACTAAGGAAACCAGTATTTACCAAGGTTGACCAACTTCGGCCGGGCACTAGTGGCCATACTCTTATAGTCAAGGTTGTGAATGCTAAGAT
GGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCTGAATGCTTGGTGGGTGATGAGACTGGAATGATCATTTTTACTGCCAGAAATGATC
AAGTGGACTTGATGAAAGAAGGTGTTACTATTACCCTGCGCAATGCTAAGATTGACATGTTTAAAGGATCAATGAGACTTGCCGTGGACAGGTGGGGCCGAGTTGAAGTT
ACTGAGCCTGCTGCGTTTACTGTTAAGGAAGATAACAATCTTTCACTCATTGAATATGAACTCGTGAATGTTGTGGAAGAGTGA

mRNA sequence

Show/hide mRNA sequence

GTATTCGCGGAAATGGCAGAATCAAAACCTGGACTAAGGAAACCAGTATTTACCAAGGTTGACCAACTTCGGCCGGGCACTAGTGGCCATACTCTTATAGTCAAGGTTGT
GAATGCTAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCTGAATGCTTGGTGGGTGATGAGACTGGAATGATCATTTTTACTG
CCAGAAATGATCAAGTGGACTTGATGAAAGAAGGTGTTACTATTACCCTGCGCAATGCTAAGATTGACATGTTTAAAGGATCAATGAGACTTGCCGTGGACAGGTGGGGC
CGAGTTGAAGTTACTGAGCCTGCTGCGTTTACTGTTAAGGAAGATAACAATCTTTCACTCATTGAATATGAACTCGTGAATGTTGTGGAAGAGTGAATTTTGTGATCGTG
TTCATTTTCCTGCT

Protein sequence

Show/hide protein sequence

MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRLAVDRWGRVEV
TEPAAFTVKEDNNLSLIEYELVNVVEE

Carg21808 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome