CuGenDBv2

Gene ID	Carg21847
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	photosystem II core complex proteins psbY, chloroplastic
Genome location	Carg_Chr05:239764..240372
RNA-Seq Expression	Carg21847
Synteny	Carg21847
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0034219 - carbohydrate transmembrane transport (biological process) GO:0045454 - cell redox homeostasis (biological process) GO:0009523 - photosystem II (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0030145 - manganese ion binding (molecular function) GO:0051119 - sugar transmembrane transporter activity (molecular function)
InterPro domains	IPR009388 - Photosystem II PsbY IPR038760 - Photosystem II PsbY, plant

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6598253.1 Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

3.4e-98

99.01

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Query:  MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIAL
        MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSN HSNLS FLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIAL
Subjt:  MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMR
        LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMR

Query:  SE
        SE
Subjt:  SE

KAG7029231.1 Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.1e-99

100

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Query:  MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIAL
        MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIAL
Subjt:  MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMR
        LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMR

Query:  SE
        SE
Subjt:  SE

KGN62604.2 hypothetical protein Csa_018753 [Cucumis sativus]

7.3e-93

93.07

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Query:  MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIAL
        MAATMATMAVLSVKCTSINST+ HNT K+IPKPISLLSLQNLPKGLISSKSN +SNLSTFLSSTAIAGAVF+ L SSDPAFAAQQIA+IAADGDNRG+AL
Subjt:  MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMR
        LLPLIPA+AWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVV PAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMR

Query:  SE
        SE
Subjt:  SE

XP_004142959.3 photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus]

7.3e-93

93.07

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Query:  MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIAL
        MAATMATMAVLSVKCTSINST+ HNT K+IPKPISLLSLQNLPKGLISSKSN +SNLSTFLSSTAIAGAVF+ L SSDPAFAAQQIA+IAADGDNRG+AL
Subjt:  MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMR
        LLPLIPA+AWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVV PAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMR

Query:  SE
        SE
Subjt:  SE

XP_038886078.1 LOW QUALITY PROTEIN: photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida]

1.1e-93

94.06

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Query:  MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIAL
        MAATMATMAVLSVKCTSINST+NHNTPK IPKPISLLSLQNLPKGL+SSKSN +SNLST LSSTAIAGAVFS LSSSDPAFAAQQIA+IAADGDNRG+AL
Subjt:  MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMR
        LLPLIPAIAWVLFNILQPALNQIN+MRSDKGVIIGLGLGGLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVV PAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMR

Query:  SE
        SE
Subjt:  SE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LKA1 Uncharacterized protein

3.5e-93

93.07

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Query:  MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIAL
        MAATMATMAVLSVKCTSINST+ HNT K+IPKPISLLSLQNLPKGLISSKSN +SNLSTFLSSTAIAGAVF+ L SSDPAFAAQQIA+IAADGDNRG+AL
Subjt:  MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMR
        LLPLIPA+AWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVV PAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMR

Query:  SE
        SE
Subjt:  SE

A0A1S3B9R1 photosystem II core complex proteins psbY, chloroplastic

1.8e-92

92.57

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Query:  MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIAL
        MAATMATMAVLSVKCTSINST+ HNT K+IPKPISLLSLQNLPKGLISSKSN +SNLSTFLSSTAIAGAVF+ L +SDPAFAAQQIA+IAADGDNRG+AL
Subjt:  MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMR
        LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVV PAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMR

Query:  SE
        S+
Subjt:  SE

A0A5A7UYJ2 Photosystem II core complex proteins psbY

1.8e-92

92.57

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Query:  MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIAL
        MAATMATMAVLSVKCTSINST+ HNT K+IPKPISLLSLQNLPKGLISSKSN +SNLSTFLSSTAIAGAVF+ L +SDPAFAAQQIA+IAADGDNRG+AL
Subjt:  MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMR
        LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVV PAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMR

Query:  SE
        S+
Subjt:  SE

A0A6J1BQF3 photosystem II core complex proteins psbY, chloroplastic

2.2e-87

88.61

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Query:  MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIAL
        MAATMATMAVLSVKCTSINS++NH TPK I  PISLLSLQNLPK LISSK++ + NLSTFLSSTAIAGAVFSA SSSDPAFAAQQIA+IAA+GDNRG+AL
Subjt:  MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMR
        LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGL AS FMYAPDASA+E+AMIADASSSD+RGQLLLFV++PAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMR

Query:  SE
        SE
Subjt:  SE

F6GVJ9 Uncharacterized protein

1.7e-74

78.22

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Query:  MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIAL
        MAAT+ATMA+L+ KC SINS +N N  K   KPISLLS+QNLPKGL + KS+ + NLST L+ TAIAGA+FS LSS DPA AAQQIA+I ADGDNRG+AL
Subjt:  MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMR
        LLP+IPAIAWVLFNILQPALNQ+N+MRS KGVIIGLGLGGL ASGFM  P ASASE+A +ADA+SSD+RGQLLLFVVTPAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMR

Query:  SE
        SE
Subjt:  SE

SwissProt top hits

e value

%identity

Alignment

O49347 Photosystem II core complex proteins psbY, chloroplastic

7.0e-46

56.1

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Query:  MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIA---ADGDNRG
        MAA MAT    + KC S+N           P P  L + Q   K  IS  +    N+S  ++STA+AGAVFS+LS S+PA A QQIA +A   A  DNRG
Subjt:  MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIA---ADGDNRG

Query:  IALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGL-GGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQL
        +ALLLP++PAIAWVL+NILQPA+NQ+N+MR  KG+++GLG+ GGL ASG +  P  + +  A  A A+SSDSRGQLLL VVTPA+LWVLYNILQPALNQ+
Subjt:  IALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGL-GGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQL

Query:  NRMRS
        N+MRS
Subjt:  NRMRS

P80470 Photosystem II core complex proteins psbY, chloroplastic

1.3e-47

58.85

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Query:  MAATMA-TMAVLSVKCTSINSTRNHNT-PKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAAD---GDN
        MAATMA TMAVL+ KC ++N+ +  +T PK   KPISL      P GL +SK      LS  +++ AIAGAVF+ L S DPAFA QQ+ADIAA+    DN
Subjt:  MAATMA-TMAVLSVKCTSINSTRNHNT-PKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAAD---GDN

Query:  RGIALLLPLIPAIAWVLFNILQPALNQINRMRSD-KGVIIGLGLGGLTASGFMYA-PDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPAL
        RG+ALLLP+IPA+ WVLFNILQPALNQIN+MR++ K  I+GLGL GL  SG + A P+A A+   +   A  SD+RG LLL VV PAI WVL+NILQPAL
Subjt:  RGIALLLPLIPAIAWVLFNILQPALNQINRMRSD-KGVIIGLGLGGLTASGFMYA-PDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPAL

Query:  NQLNRMRSE
        NQLN+MRS+
Subjt:  NQLNRMRSE

Arabidopsis top hits

e value

%identity

Alignment

AT1G67740.1 photosystem II BY

5.0e-47

56.1

Show/hide

Query:  MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIA---ADGDNRG
        MAA MAT    + KC S+N           P P  L + Q   K  IS  +    N+S  ++STA+AGAVFS+LS S+PA A QQIA +A   A  DNRG
Subjt:  MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIA---ADGDNRG

Query:  IALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGL-GGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQL
        +ALLLP++PAIAWVL+NILQPA+NQ+N+MR  KG+++GLG+ GGL ASG +  P  + +  A  A A+SSDSRGQLLL VVTPA+LWVLYNILQPALNQ+
Subjt:  IALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGL-GGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQL

Query:  NRMRS
        N+MRS
Subjt:  NRMRS

Sequences

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CDS sequence

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ATGGCAGCTACCATGGCAACAATGGCAGTGCTGAGTGTCAAGTGCACAAGCATCAACTCCACCAGAAACCACAACACCCCAAAGCTGATCCCCAAGCCCATCTCCCTTCT
CTCTCTTCAGAACCTGCCGAAAGGACTGATCTCATCAAAATCCAATGGACATTCCAACTTATCAACCTTTCTCTCCAGCACCGCCATCGCCGGAGCTGTCTTCTCAGCCC
TGAGCTCATCAGATCCTGCCTTCGCAGCCCAACAAATTGCAGATATAGCAGCCGACGGTGACAACCGTGGAATAGCCCTTTTGCTACCTCTTATCCCGGCCATAGCATGG
GTTCTGTTCAACATATTACAGCCAGCACTCAACCAGATAAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTGGGATTAGGGGGGTTGACTGCATCAGGGTTTAT
GTACGCACCTGATGCCTCTGCCAGTGAGCTCGCCATGATTGCCGATGCATCCTCAAGTGATAGCAGGGGCCAGCTTCTGCTGTTTGTCGTAACTCCCGCCATTCTTTGGG
TGCTGTACAACATTCTTCAGCCGGCTTTGAATCAGCTCAACAGGATGAGGTCCGAGTGA

mRNA sequence

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Protein sequence

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MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAW
VLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMRSE

Carg21847 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome