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Carg21852 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21852
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING-type domain-containing protein
Genome locationCarg_Chr05:253791..254560
RNA-Seq ExpressionCarg21852
SyntenyCarg21852
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029236.1 hypothetical protein SDJN02_07574, partial [Cucurbita argyrosperma subsp. argyrosperma]3.1e-33100Show/hide
Query:  MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKLVYTDGRPNISAHGRKATVKEFYGGFIETLF
        MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKLVYTDGRPNISAHGRKATVKEFYGGFIETLF
Subjt:  MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKLVYTDGRPNISAHGRKATVKEFYGGFIETLF

XP_022962105.1 E3 ubiquitin-protein ligase CHFR-like isoform X1 [Cucurbita moschata]5.0e-2360.91Show/hide
Query:  MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISAHGRKATVK
        MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL                                     VYTDGRPNISAHGRKATVK
Subjt:  MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISAHGRKATVK

Query:  EFYGGFIETL
        EFY   + +L
Subjt:  EFYGGFIETL

XP_022962108.1 uncharacterized protein LOC111462660 isoform X2 [Cucurbita moschata]5.0e-2360.91Show/hide
Query:  MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISAHGRKATVK
        MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL                                     VYTDGRPNISAHGRKATVK
Subjt:  MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISAHGRKATVK

Query:  EFYGGFIETL
        EFY   + +L
Subjt:  EFYGGFIETL

XP_022996708.1 uncharacterized protein LOC111491874 [Cucurbita maxima]1.5e-2259.09Show/hide
Query:  MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISAHGRKATVK
        MYYRVARSSCKDSLKVLEED+ERANALAAAIPRAKHGSYLQMKL                                     VYTDGRPNISAHGRKATVK
Subjt:  MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISAHGRKATVK

Query:  EFYGGFIETL
        +FY   + +L
Subjt:  EFYGGFIETL

XP_023546493.1 E3 ubiquitin-protein ligase CHFR-like [Cucurbita pepo subsp. pepo]4.2e-2260Show/hide
Query:  MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISAHGRKATVK
        MYY VARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL                                     VYTDGRPNISAHGRKATVK
Subjt:  MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISAHGRKATVK

Query:  EFYGGFIETL
        EFY   + +L
Subjt:  EFYGGFIETL

TrEMBL top hitse value%identityAlignment
A0A6J1GGU1 uncharacterized protein LOC1114540988.6e-2154.55Show/hide
Query:  MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISAHGRKATVK
        MYYR++RSSCKDSLKVLEEDV RANALA AIPRAKHGSYLQMKL                                     VYTDGRPN+SAHGRKAT+K
Subjt:  MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISAHGRKATVK

Query:  EFYGGFIETL
        +FY   + +L
Subjt:  EFYGGFIETL

A0A6J1HBV1 E3 ubiquitin-protein ligase CHFR-like isoform X12.4e-2360.91Show/hide
Query:  MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISAHGRKATVK
        MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL                                     VYTDGRPNISAHGRKATVK
Subjt:  MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISAHGRKATVK

Query:  EFYGGFIETL
        EFY   + +L
Subjt:  EFYGGFIETL

A0A6J1HDV0 uncharacterized protein LOC111462660 isoform X22.4e-2360.91Show/hide
Query:  MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISAHGRKATVK
        MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL                                     VYTDGRPNISAHGRKATVK
Subjt:  MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISAHGRKATVK

Query:  EFYGGFIETL
        EFY   + +L
Subjt:  EFYGGFIETL

A0A6J1KBT4 uncharacterized protein LOC1114918747.0e-2359.09Show/hide
Query:  MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISAHGRKATVK
        MYYRVARSSCKDSLKVLEED+ERANALAAAIPRAKHGSYLQMKL                                     VYTDGRPNISAHGRKATVK
Subjt:  MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISAHGRKATVK

Query:  EFYGGFIETL
        +FY   + +L
Subjt:  EFYGGFIETL

A0A6J1KIH2 uncharacterized protein LOC1114960618.6e-2154.55Show/hide
Query:  MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISAHGRKATVK
        MYYR++RSSCKDSLKVLEEDV RANALA AIPRAKHGSYLQMKL                                     VYTDGRPN+SAHGRKAT+K
Subjt:  MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISAHGRKATVK

Query:  EFYGGFIETL
        +FY   + +L
Subjt:  EFYGGFIETL

SwissProt top hitse value%identityAlignment
Q9M022 E3 ubiquitin-protein ligase AIRP21.3e-0532.26Show/hide
Query:  RSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL---------------------------------VYTDGRPNISAHGRKATVKEFY
        R S KDSLK LE D++ AN LA+  P    G Y+QM+L                                  Y DG+  +S H RK +++EFY
Subjt:  RSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL---------------------------------VYTDGRPNISAHGRKATVKEFY

Arabidopsis top hitse value%identityAlignment
AT1G13195.1 RING/U-box superfamily protein4.0e-1036.89Show/hide
Query:  SSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKLVY-------------------------------------TDGRPNISAHGRKATVKEFYGGFI
        SS  +SLKVLE DV+ AN+LA AIP  K+   LQMKLV+                                     +DG+P ++ HGRKAT+ EFYG  +
Subjt:  SSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKLVY-------------------------------------TDGRPNISAHGRKATVKEFYGGFI

Query:  ETL
         +L
Subjt:  ETL

AT1G24440.1 RING/U-box superfamily protein5.0e-1339.81Show/hide
Query:  MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKLVYT-----------------------------------DGRPNISAHGRKATVKEF
        MYY++ +SS +DSLK+LE D+E AN LAA IP  K G  LQMKLV +                                   DGR N S +GRKAT++EF
Subjt:  MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKLVYT-----------------------------------DGRPNISAHGRKATVKEF

Query:  YGGFIETL
        YG  + +L
Subjt:  YGGFIETL

AT3G47160.1 RING/U-box superfamily protein7.0e-0730.39Show/hide
Query:  VARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKLVYT---------------------------------DGRPNISAHGRKATVKEFYGGFIE
        +A+ S KDSLK LE D++ AN +A   PR K G+ +QM+L YT                                 DG+  +S + RK ++K+FY     
Subjt:  VARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKLVYT---------------------------------DGRPNISAHGRKATVKEFYGGFIE

Query:  TL
        +L
Subjt:  TL

AT5G01520.1 RING/U-box superfamily protein9.1e-0732.26Show/hide
Query:  RSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL---------------------------------VYTDGRPNISAHGRKATVKEFY
        R S KDSLK LE D++ AN LA+  P    G Y+QM+L                                  Y DG+  +S H RK +++EFY
Subjt:  RSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL---------------------------------VYTDGRPNISAHGRKATVKEFY

AT5G01520.2 RING/U-box superfamily protein9.1e-0732.26Show/hide
Query:  RSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL---------------------------------VYTDGRPNISAHGRKATVKEFY
        R S KDSLK LE D++ AN LA+  P    G Y+QM+L                                  Y DG+  +S H RK +++EFY
Subjt:  RSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKL---------------------------------VYTDGRPNISAHGRKATVKEFY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATTATCGGGTAGCGAGGTCTTCTTGTAAGGATTCTCTGAAGGTCTTGGAAGAAGATGTAGAACGCGCCAATGCTCTGGCTGCTGCAATTCCAAGAGCCAAACATGG
TTCCTATCTCCAAATGAAGCTGGTTTACACAGATGGAAGGCCTAACATATCAGCTCATGGAAGAAAGGCAACTGTGAAGGAATTTTACGGGGGTTTCATTGAAACTTTGT
TCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATTATCGGGTAGCGAGGTCTTCTTGTAAGGATTCTCTGAAGGTCTTGGAAGAAGATGTAGAACGCGCCAATGCTCTGGCTGCTGCAATTCCAAGAGCCAAACATGG
TTCCTATCTCCAAATGAAGCTGGTTTACACAGATGGAAGGCCTAACATATCAGCTCATGGAAGAAAGGCAACTGTGAAGGAATTTTACGGGGGTTTCATTGAAACTTTGT
TCTGA
Protein sequenceShow/hide protein sequence
MYYRVARSSCKDSLKVLEEDVERANALAAAIPRAKHGSYLQMKLVYTDGRPNISAHGRKATVKEFYGGFIETLF