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Carg21863 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21863
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionNADH-ubiquinone oxidoreductase chain 5
Genome locationCarg_Chr05:8546291..8548566
RNA-Seq ExpressionCarg21863
SyntenyCarg21863
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599112.1 hypothetical protein SDJN03_08890, partial [Cucurbita argyrosperma subsp. sororia]7.6e-68100Show/hide
Query:  MLSLNSISQFLVPFICGCVKFPILHRRPSEKPTSRGAAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLVFSAVSL
        MLSLNSISQFLVPFICGCVKFPILHRRPSEKPTSRGAAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLVFSAVSL
Subjt:  MLSLNSISQFLVPFICGCVKFPILHRRPSEKPTSRGAAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLVFSAVSL

Query:  YFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM
        YFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM
Subjt:  YFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM

XP_008464874.1 PREDICTED: uncharacterized protein LOC103502637 isoform X1 [Cucumis melo]1.0e-5181.33Show/hide
Query:  MLSLNSISQFLVPFICGCVKFPILHRRPS----EKPTSRG--AAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLV
        MLSLNSISQFLV F+C C +  ILH   S    +K  SRG  +AMITRSNLVEQLREYQIRSKH+WAS SFFSSTSNITSSRVD+VIFVIWELIILSFLV
Subjt:  MLSLNSISQFLVPFICGCVKFPILHRRPS----EKPTSRG--AAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLV

Query:  FSAVSLYFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM
        FSAVSLYFRHMQL F+LVCITMLL++CMKVTKQ+RLARKKKRRMLLPLSM
Subjt:  FSAVSLYFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM

XP_022946845.1 uncharacterized protein LOC111450786 [Cucurbita moschata]9.9e-6899.31Show/hide
Query:  MLSLNSISQFLVPFICGCVKFPILHRRPSEKPTSRGAAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLVFSAVSL
        MLSLNSISQFLVPFICGCVKFPILHRRPSEKPTSRGAAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVD+VIFVIWELIILSFLVFSAVSL
Subjt:  MLSLNSISQFLVPFICGCVKFPILHRRPSEKPTSRGAAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLVFSAVSL

Query:  YFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM
        YFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM
Subjt:  YFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM

XP_022999777.1 uncharacterized protein LOC111494024 [Cucurbita maxima]3.8e-6797.92Show/hide
Query:  MLSLNSISQFLVPFICGCVKFPILHRRPSEKPTSRGAAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLVFSAVSL
        MLSLNSISQFLVPFICGCVKFPI HRRPSEKPTSRGAAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVD+VIFVIWELIILSFLVFSAVSL
Subjt:  MLSLNSISQFLVPFICGCVKFPILHRRPSEKPTSRGAAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLVFSAVSL

Query:  YFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM
        YFRHMQLTFVL+CITMLLIVCMKVTKQMRLARKKKRRMLLPLSM
Subjt:  YFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM

XP_038884232.1 uncharacterized protein LOC120075129 [Benincasa hispida]5.1e-5685.14Show/hide
Query:  MLSLNSISQFLVPFICGCVKFPILHRRPS----EKPTSRGAAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLVFS
        MLSLNSISQFLV F+C CVK  ILH RPS    +K  SRG+AMITRSNLVEQLREYQIRSKH+WAS SFFSSTSNITSSRVD+VIFVIWELIILSFLVFS
Subjt:  MLSLNSISQFLVPFICGCVKFPILHRRPS----EKPTSRGAAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLVFS

Query:  AVSLYFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM
        AVSLYFRHMQL F+LVCITMLL++CMKVTKQ+RLARKKKRRMLLPLSM
Subjt:  AVSLYFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM

TrEMBL top hitse value%identityAlignment
A0A0A0KIH9 Uncharacterized protein8.2e-5281.33Show/hide
Query:  MLSLNSISQFLVPFICGCVKFPILHRRPS----EKPTSRG--AAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLV
        MLSLNSISQFLV F+C C    ILH   S    +K  SRG  +AMITRSNLVEQLREYQIRSKH+WAS SFFSSTSNITSSRVD+VIFVIWELIILSFLV
Subjt:  MLSLNSISQFLVPFICGCVKFPILHRRPS----EKPTSRG--AAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLV

Query:  FSAVSLYFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM
        FSAVSLYFRHMQL F+LVCITMLL++CMKVTKQ+RLARKKKRRMLLPLSM
Subjt:  FSAVSLYFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM

A0A1S3CMK7 uncharacterized protein LOC103502637 isoform X14.8e-5281.33Show/hide
Query:  MLSLNSISQFLVPFICGCVKFPILHRRPS----EKPTSRG--AAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLV
        MLSLNSISQFLV F+C C +  ILH   S    +K  SRG  +AMITRSNLVEQLREYQIRSKH+WAS SFFSSTSNITSSRVD+VIFVIWELIILSFLV
Subjt:  MLSLNSISQFLVPFICGCVKFPILHRRPS----EKPTSRG--AAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLV

Query:  FSAVSLYFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM
        FSAVSLYFRHMQL F+LVCITMLL++CMKVTKQ+RLARKKKRRMLLPLSM
Subjt:  FSAVSLYFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM

A0A6J1G568 uncharacterized protein LOC1114507864.8e-6899.31Show/hide
Query:  MLSLNSISQFLVPFICGCVKFPILHRRPSEKPTSRGAAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLVFSAVSL
        MLSLNSISQFLVPFICGCVKFPILHRRPSEKPTSRGAAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVD+VIFVIWELIILSFLVFSAVSL
Subjt:  MLSLNSISQFLVPFICGCVKFPILHRRPSEKPTSRGAAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLVFSAVSL

Query:  YFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM
        YFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM
Subjt:  YFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM

A0A6J1GHS6 uncharacterized protein LOC1114542824.1e-5179.59Show/hide
Query:  LSLNSISQFLVPFICGCVKFPILHRRP----SEKPTSRGAAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLVFSA
        LSLNSISQFL+ F+  C K   LHRRP    +++  SRGAAMITRSNLVEQLREYQIRSKH+WAS S FSS SNITSSRVD+VIFVIWELIIL+FLVFSA
Subjt:  LSLNSISQFLVPFICGCVKFPILHRRP----SEKPTSRGAAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLVFSA

Query:  VSLYFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM
        VSLYFRHMQL  +LVCITMLL++CMKVTKQ+RLARKKKRRMLLPLSM
Subjt:  VSLYFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM

A0A6J1KBR2 uncharacterized protein LOC1114940241.8e-6797.92Show/hide
Query:  MLSLNSISQFLVPFICGCVKFPILHRRPSEKPTSRGAAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLVFSAVSL
        MLSLNSISQFLVPFICGCVKFPI HRRPSEKPTSRGAAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVD+VIFVIWELIILSFLVFSAVSL
Subjt:  MLSLNSISQFLVPFICGCVKFPILHRRPSEKPTSRGAAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLVFSAVSL

Query:  YFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM
        YFRHMQLTFVL+CITMLLIVCMKVTKQMRLARKKKRRMLLPLSM
Subjt:  YFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G20460.1 unknown protein5.8e-4282.08Show/hide
Query:  MITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLVFSAVSLYFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRM
        MITRSNL EQLREYQIRSKHDWAS SFFSSTSN +SSRVD+V+FVIWEL+IL+F VFSAVSLYF+ +QL F+LVC+T+LL++CMKVTKQ+RLARKKKRRM
Subjt:  MITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLVFSAVSLYFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRM

Query:  LLPLSM
        LLPLSM
Subjt:  LLPLSM

AT1G76185.1 unknown protein7.1e-4078.3Show/hide
Query:  MITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLVFSAVSLYFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRM
        MITRSNL EQLREYQIRSKHDWAS SFFSSTSN +SSRVD+V+FVIWEL++L+ +VFSAVSLYFR +QL F+L+C+T+LL++CMK+TKQ+R ARKKKRRM
Subjt:  MITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLVFSAVSLYFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRM

Query:  LLPLSM
        LLPLSM
Subjt:  LLPLSM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTCTCTCAATTCCATTTCTCAATTCCTCGTTCCATTCATCTGTGGCTGTGTTAAATTCCCCATTCTTCATCGTCGCCCTTCAGAGAAACCAACCTCTCGGGGCGC
AGCCATGATTACTCGATCGAATCTGGTTGAACAGTTGAGAGAATACCAGATTCGATCCAAGCACGACTGGGCTTCCGCCTCCTTCTTCTCCTCTACCTCTAATATTACAT
CCTCCAGGGTGGATATAGTCATTTTTGTAATATGGGAACTCATAATTCTATCCTTCTTGGTGTTTTCGGCGGTTTCTTTATATTTTCGACATATGCAGTTGACTTTCGTT
TTAGTATGCATAACGATGTTGTTGATTGTATGCATGAAAGTAACAAAGCAAATGAGATTGGCTAGGAAGAAGAAAAGAAGGATGCTTCTTCCATTGTCCATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCTCTCTCAATTCCATTTCTCAATTCCTCGTTCCATTCATCTGTGGCTGTGTTAAATTCCCCATTCTTCATCGTCGCCCTTCAGAGAAACCAACCTCTCGGGGCGC
AGCCATGATTACTCGATCGAATCTGGTTGAACAGTTGAGAGAATACCAGATTCGATCCAAGCACGACTGGGCTTCCGCCTCCTTCTTCTCCTCTACCTCTAATATTACAT
CCTCCAGGGTGGATATAGTCATTTTTGTAATATGGGAACTCATAATTCTATCCTTCTTGGTGTTTTCGGCGGTTTCTTTATATTTTCGACATATGCAGTTGACTTTCGTT
TTAGTATGCATAACGATGTTGTTGATTGTATGCATGAAAGTAACAAAGCAAATGAGATTGGCTAGGAAGAAGAAAAGAAGGATGCTTCTTCCATTGTCCATGTGA
Protein sequenceShow/hide protein sequence
MLSLNSISQFLVPFICGCVKFPILHRRPSEKPTSRGAAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLVFSAVSLYFRHMQLTFV
LVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM