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Carg21893 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21893
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionincreased DNA methylation 3-like
Genome locationCarg_Chr05:8345097..8345709
RNA-Seq ExpressionCarg21893
SyntenyCarg21893
Gene Ontology termsGO:1901537 - positive regulation of DNA demethylation (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR002068 - Alpha crystallin/Hsp20 domain
IPR008978 - HSP20-like chaperone
IPR039321 - Increased DNA methylation 2/3-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599085.1 Increased DNA methylation 3, partial [Cucurbita argyrosperma subsp. sororia]5.9e-76100Show/hide
Query:  MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGP
        MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGP
Subjt:  MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGP

Query:  LTVSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPPL
        LTVSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPPL
Subjt:  LTVSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPPL

XP_022945989.1 increased DNA methylation 3-like [Cucurbita moschata]1.1e-7497.95Show/hide
Query:  MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGP
        M+MEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKV+IEGVMAGPGLLK+SSAMYEMKVQQLCPPGP
Subjt:  MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGP

Query:  LTVSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPPL
        LTVSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPPL
Subjt:  LTVSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPPL

XP_022951227.1 increased DNA methylation 3-like [Cucurbita moschata]2.7e-6587.59Show/hide
Query:  MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGP
        M MEGHGD  +LKPSVILTGTA EGSSGPPIGLVDIGVSEGAYLFRVA+PGVRKD SKVKFEIK DG+V IEGVM GPGLLKDSSAMY+MKVQQLCPPG 
Subjt:  MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGP

Query:  LTVSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPP
         TVSFKLPGPVDPRLSSPSFR DGILEVVVMKS+APPTV+DS+PP
Subjt:  LTVSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPP

XP_022999775.1 increased DNA methylation 3-like [Cucurbita maxima]1.4e-7497.26Show/hide
Query:  MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGP
        M+MEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKV+IEGVMAGPGLLK+SSAMYEMKVQQLCPPGP
Subjt:  MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGP

Query:  LTVSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPPL
        LT+SFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPPL
Subjt:  LTVSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPPL

XP_023546049.1 increased DNA methylation 3-like [Cucurbita pepo subsp. pepo]5.0e-7598.63Show/hide
Query:  MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGP
        MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKV+IEGVMAGPGLLK+SSAMYEMKVQQLCPPGP
Subjt:  MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGP

Query:  LTVSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPPL
        LTVSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPPL
Subjt:  LTVSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPPL

TrEMBL top hitse value%identityAlignment
A0A1S3CMV5 increased DNA methylation 3 isoform X23.9e-6588.19Show/hide
Query:  MEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGPLT
        MEG+GDQT LKPSVILTGTA EGSSGPPIGLVDIGVSEGAYLFRVA+PGVRKD SKVKFEIK DGKV+IEGVM+GPG LK+SSAMY+MKVQQLCPPGP T
Subjt:  MEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGPLT

Query:  VSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPPL
        VSFKLPGPVDPRLSSPSFR DGILEVVVMKS+A PTV+DS PPL
Subjt:  VSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPPL

A0A6J1G2H5 increased DNA methylation 3-like5.4e-7597.95Show/hide
Query:  MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGP
        M+MEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKV+IEGVMAGPGLLK+SSAMYEMKVQQLCPPGP
Subjt:  MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGP

Query:  LTVSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPPL
        LTVSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPPL
Subjt:  LTVSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPPL

A0A6J1GI33 increased DNA methylation 3-like1.3e-6587.59Show/hide
Query:  MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGP
        M MEGHGD  +LKPSVILTGTA EGSSGPPIGLVDIGVSEGAYLFRVA+PGVRKD SKVKFEIK DG+V IEGVM GPGLLKDSSAMY+MKVQQLCPPG 
Subjt:  MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGP

Query:  LTVSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPP
         TVSFKLPGPVDPRLSSPSFR DGILEVVVMKS+APPTV+DS+PP
Subjt:  LTVSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPP

A0A6J1KGJ6 increased DNA methylation 3-like7.0e-7597.26Show/hide
Query:  MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGP
        M+MEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKV+IEGVMAGPGLLK+SSAMYEMKVQQLCPPGP
Subjt:  MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGP

Query:  LTVSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPPL
        LT+SFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPPL
Subjt:  LTVSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPPL

A0A6J1KJX1 increased DNA methylation 3-like3.0e-6587.59Show/hide
Query:  MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGP
        M MEGHGD  +LKPSVILTGTA EGSSGPPIGLVDIGVSEGAYLFRVA+PGVRKD SKVKFEIK DG+V IEGVM GPGLLKDSSAMY+MKVQQLCPPG 
Subjt:  MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGP

Query:  LTVSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPP
         TVSFKLPGPVDPRLSSPSFR DGILEVVVMKS+APPTV+DS PP
Subjt:  LTVSFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPP

SwissProt top hitse value%identityAlignment
Q84K79 Alpha-crystallin domain-containing protein 22.31.9e-2144.35Show/hide
Query:  TRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEG-VMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLP
        ++ K  V LTG+A  G  G  IGLVDI  SE +Y FRVA+PGV +D  +   EI+ DGK+ I+G    G   +   + +++M  Q LCPPG  T++F+LP
Subjt:  TRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEG-VMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLP

Query:  GPVDPRLSSPSFRADGILEVVVMK
        GPV     + +F +DG+LE VV K
Subjt:  GPVDPRLSSPSFRADGILEVVVMK

Q8RWL4 Increased DNA methylation 21.5e-2143.38Show/hide
Query:  GHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGV-MAGPGLLKDSSAMYEMKVQQLCPPGPLTV
        G       KP V      +E   G  +GL+DIG  + AYLFRV++PGV++D      E++ +GKV + GV   G   +K  S ++EM+ + LCPPG  +V
Subjt:  GHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGV-MAGPGLLKDSSAMYEMKVQQLCPPGPLTV

Query:  SFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTV
        SF+LPGPV P   S +F  DGILE VVMK+    TV
Subjt:  SFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTV

Q9SYQ0 Increased DNA methylation 33.9e-3052.03Show/hide
Query:  KPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEG-VMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPV
        +PSV+ TGTA++ + G  +G+VDIGV++ AY F+VA+PGVRKD  +   EI+ DGKV +EG    G   +K  S ++EM +++LCPPGP  + F LPGPV
Subjt:  KPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEG-VMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPV

Query:  DPRLSSPSFRADGILEVVVMKSK
        DPRL SP+FR+DGI E V+++ K
Subjt:  DPRLSSPSFRADGILEVVVMKSK

Arabidopsis top hitse value%identityAlignment
AT1G20870.1 HSP20-like chaperones superfamily protein2.8e-3152.03Show/hide
Query:  KPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEG-VMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPV
        +PSV+ TGTA++ + G  +G+VDIGV++ AY F+VA+PGVRKD  +   EI+ DGKV +EG    G   +K  S ++EM +++LCPPGP  + F LPGPV
Subjt:  KPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEG-VMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPV

Query:  DPRLSSPSFRADGILEVVVMKSK
        DPRL SP+FR+DGI E V+++ K
Subjt:  DPRLSSPSFRADGILEVVVMKSK

AT1G54840.1 HSP20-like chaperones superfamily protein1.0e-2243.38Show/hide
Query:  GHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGV-MAGPGLLKDSSAMYEMKVQQLCPPGPLTV
        G       KP V      +E   G  +GL+DIG  + AYLFRV++PGV++D      E++ +GKV + GV   G   +K  S ++EM+ + LCPPG  +V
Subjt:  GHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGV-MAGPGLLKDSSAMYEMKVQQLCPPGPLTV

Query:  SFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTV
        SF+LPGPV P   S +F  DGILE VVMK+    TV
Subjt:  SFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTV

AT1G76440.1 HSP20-like chaperones superfamily protein4.4e-3760.68Show/hide
Query:  VILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRL
        V  TGTA  GS GPPIGLVDIGVSE AY+FRV++PG+ K+  K+K EI+R+G+V I+GV+    +  D+  +Y M+VQQLCPPGP +++F LPG VDPRL
Subjt:  VILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRL

Query:  SSPSFRADGILEVVVMK
         SP+FR+DGI EVVV+K
Subjt:  SSPSFRADGILEVVVMK

AT1G76440.2 HSP20-like chaperones superfamily protein4.4e-3760.68Show/hide
Query:  VILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRL
        V  TGTA  GS GPPIGLVDIGVSE AY+FRV++PG+ K+  K+K EI+R+G+V I+GV+    +  D+  +Y M+VQQLCPPGP +++F LPG VDPRL
Subjt:  VILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRL

Query:  SSPSFRADGILEVVVMK
         SP+FR+DGI EVVV+K
Subjt:  SSPSFRADGILEVVVMK

AT1G76440.3 HSP20-like chaperones superfamily protein4.4e-3760.68Show/hide
Query:  VILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRL
        V  TGTA  GS GPPIGLVDIGVSE AY+FRV++PG+ K+  K+K EI+R+G+V I+GV+    +  D+  +Y M+VQQLCPPGP +++F LPG VDPRL
Subjt:  VILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGPVDPRL

Query:  SSPSFRADGILEVVVMK
         SP+FR+DGI EVVV+K
Subjt:  SSPSFRADGILEVVVMK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGGAAGGCCATGGCGATCAGACAAGGCTCAAACCATCAGTTATTTTAACTGGAACAGCCAATGAAGGTAGCTCTGGCCCTCCTATTGGTCTTGTTGATATTGG
CGTGAGTGAAGGTGCATACCTCTTCCGCGTTGCAATGCCTGGTGTACGAAAGGATCCAAGTAAGGTAAAATTTGAGATCAAAAGGGATGGTAAGGTTCGGATTGAAGGAG
TGATGGCAGGTCCAGGCCTCTTAAAAGACTCATCAGCTATGTACGAGATGAAAGTCCAGCAACTGTGTCCTCCCGGACCTCTTACGGTTTCTTTTAAGCTGCCTGGACCA
GTCGATCCACGGTTGTCATCTCCTAGTTTCCGGGCTGATGGTATTCTGGAAGTGGTGGTTATGAAGTCTAAAGCACCTCCAACAGTGTCTGATTCCTACCCACCATTGTG
A
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGGAAGGCCATGGCGATCAGACAAGGCTCAAACCATCAGTTATTTTAACTGGAACAGCCAATGAAGGTAGCTCTGGCCCTCCTATTGGTCTTGTTGATATTGG
CGTGAGTGAAGGTGCATACCTCTTCCGCGTTGCAATGCCTGGTGTACGAAAGGATCCAAGTAAGGTAAAATTTGAGATCAAAAGGGATGGTAAGGTTCGGATTGAAGGAG
TGATGGCAGGTCCAGGCCTCTTAAAAGACTCATCAGCTATGTACGAGATGAAAGTCCAGCAACTGTGTCCTCCCGGACCTCTTACGGTTTCTTTTAAGCTGCCTGGACCA
GTCGATCCACGGTTGTCATCTCCTAGTTTCCGGGCTGATGGTATTCTGGAAGTGGTGGTTATGAAGTCTAAAGCACCTCCAACAGTGTCTGATTCCTACCCACCATTGTG
ATGAGTATGATGGAGAGAGGTATCTGGTTTTGCTGTCTCCTTT
Protein sequenceShow/hide protein sequence
MEMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVRIEGVMAGPGLLKDSSAMYEMKVQQLCPPGPLTVSFKLPGP
VDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPPL