CuGenDBv2

Gene ID	Carg21904
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	centromere protein V-like
Genome location	Carg_Chr05:8237382..8240681
RNA-Seq Expression	Carg21904
Synteny	Carg21904
Gene Ontology terms	GO:0016846 - carbon-sulfur lyase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR006913 - CENP-V/GFA domain IPR011057 - Mss4-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6599075.1 Centromere protein V, partial [Cucurbita argyrosperma subsp. sororia]

4.3e-88

100

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Query:  KESEQSFTKRLKGVISSIMDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGI
        KESEQSFTKRLKGVISSIMDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGI
Subjt:  KESEQSFTKRLKGVISSIMDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGI

Query:  TSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
        TSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
Subjt:  TSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS

KAG7030011.1 Centromere protein V, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.4e-91

100

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Query:  MISTSNAKESEQSFTKRLKGVISSIMDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHT
        MISTSNAKESEQSFTKRLKGVISSIMDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHT
Subjt:  MISTSNAKESEQSFTKRLKGVISSIMDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHT

Query:  FCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
        FCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
Subjt:  FCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS

XP_022946627.1 centromere protein V-like [Cucurbita moschata]

1.8e-78

100

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Query:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
        MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
Subjt:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
        CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS

XP_022999779.1 centromere protein V-like [Cucurbita maxima]

6.5e-76

97.06

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Query:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
        MDSELVVHNGGCHCK VRWRVEAP SVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
Subjt:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
        CVDPGTL +VEIRQFDGSNWEASYGHTGIASFSKLS
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS

XP_023546052.1 centromere protein V [Cucurbita pepo subsp. pepo]

1.0e-76

97.79

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Query:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
        MDSELV HNGGCHCK VRWRVEAP SVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
Subjt:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
        CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CMD8 centromere protein V isoform X2

8.0e-72

91.18

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Query:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
        M SELVVHNGGCHCK VRWRVEAP SVVAWDCNCS+CFMRANTHFIVPLERFKLLGDS NF+STYTFG+HTAKHTFCK CGITSFY PRSNPDGVAITFK
Subjt:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
        CVDPGTLTHVE+RQFDGSNWEASY HTGIASFSKL+
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS

A0A1S3CMF5 centromere protein V isoform X5

8.0e-72

91.18

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Query:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
        M SELVVHNGGCHCK VRWRVEAP SVVAWDCNCS+CFMRANTHFIVPLERFKLLGDS NF+STYTFG+HTAKHTFCK CGITSFY PRSNPDGVAITFK
Subjt:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
        CVDPGTLTHVE+RQFDGSNWEASY HTGIASFSKL+
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS

A0A5D3CJK9 Centromere protein V isoform X1

8.0e-72

91.18

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Query:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
        M SELVVHNGGCHCK VRWRVEAP SVVAWDCNCS+CFMRANTHFIVPLERFKLLGDS NF+STYTFG+HTAKHTFCK CGITSFY PRSNPDGVAITFK
Subjt:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
        CVDPGTLTHVE+RQFDGSNWEASY HTGIASFSKL+
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS

A0A6J1G4E1 centromere protein V-like

8.8e-79

100

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Query:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
        MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
Subjt:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
        CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS

A0A6J1KE30 centromere protein V-like

3.1e-76

97.06

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Query:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
        MDSELVVHNGGCHCK VRWRVEAP SVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
Subjt:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
        CVDPGTL +VEIRQFDGSNWEASYGHTGIASFSKLS
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS

SwissProt top hits

e value

%identity

Alignment

Q7Z7K6 Centromere protein V

1.4e-33

46.58

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Query:  KESEQSFTKRLK----GVISSIMDS----ELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKH
        +E  ++F KR K    G    ++D+     LV H GGCHC  VR+ V A   +  +DCNCS C  + N HFIVP  RFKLL  +++ I+TYTF TH A+H
Subjt:  KESEQSFTKRLK----GVISSIMDS----ELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKH

Query:  TFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNWE-ASYGHTGIASFSK
        TFCK CG+ SFY PRSNP G  I   C+D GT+  +   +F+GS+WE A   H  I + SK
Subjt:  TFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNWE-ASYGHTGIASFSK

Q9CXS4 Centromere protein V

6.4e-34

47.71

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Query:  KESEQSFTKRLKGVISSIMDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGI
        K    SF    K ++ +     LV H GGCHC  VR+ V A   +  +DCNCS C  + N HFIVP  RFKLL  +++ I+TYTF TH A+HTFCK CG+
Subjt:  KESEQSFTKRLKGVISSIMDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGI

Query:  TSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNWE-ASYGHTGIASFSK
         SFY PRSNP G  I   C+D GT+  V   +F+GS+WE A   H  I + SK
Subjt:  TSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNWE-ASYGHTGIASFSK

Arabidopsis top hits

e value

%identity

Alignment

AT5G16940.1 carbon-sulfur lyases

3.4e-59

70.9

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Query:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
        M+SEL+ H GGCHC  ++WRV+A  SV+AW CNCSDC MR N HFIVP   F+LL DSK+FI+TYTFGTHTAKHTFCKVCGITSFY PRSNPDGVA+T K
Subjt:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSK
        CV  GTL H+E++ +DG NWE S+  TGIASFSK
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSK

AT5G16940.2 carbon-sulfur lyases

3.4e-59

70.9

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Query:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
        M+SEL+ H GGCHC  ++WRV+A  SV+AW CNCSDC MR N HFIVP   F+LL DSK+FI+TYTFGTHTAKHTFCKVCGITSFY PRSNPDGVA+T K
Subjt:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSK
        CV  GTL H+E++ +DG NWE S+  TGIASFSK
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSK

Sequences

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CDS sequence

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mRNA sequence

Show/hide mRNA sequence

ATGATTTCAACATCCAACGCAAAGGAAAGCGAACAATCATTCACTAAAAGATTGAAAGGGGTGATTTCTTCTATAATGGACTCCGAGTTAGTTGTGCATAACGGTGGATG
CCACTGCAAGAACGTAAGATGGCGAGTCGAAGCACCTACTAGTGTCGTAGCTTGGGATTGTAACTGTTCTGATTGCTTCATGAGGGCCAATACACATTTTATTGTGCCTT
TGGAACGGTTCAAACTTTTAGGAGATTCCAAGAACTTTATTTCAACCTATACGTTTGGTACTCACACTGCAAAACATACCTTCTGTAAAGTTTGTGGCATTACCTCATTT
TACCATCCACGCTCAAACCCAGATGGAGTTGCCATTACTTTCAAATGTGTTGATCCTGGAACATTGACCCATGTTGAGATTAGGCAGTTTGATGGGAGCAACTGGGAGGC
CTCATATGGTCATACAGGCATTGCTTCATTTTCTAAGCTGTCTTAGAACATTAGTTAATATGCATTTTGATATTTGCTATAATCTATGTTTGTGACTGTTGACACGAACT
TTGTTTAGACTTGTATTTGTATCAAATGTATATTCGTATTCCCGAGTCTCGAGTCTTGTATGCAGGCACACGATATTTCTACCGAGTCTATCTCTTCTTGGACTGTTCTG
TTATCCCTTTTGACCACTGTATTTTCCTCTTTTGCCACACAATGAAATCTGAGACTCGAACCAAAATAAAAAATGTGTTGTTTGTTTGGTTTAAACCTATTCTAGATTGT
TAGGGTCAATTTAGGTTAAATTACAAGTTTAGTTCTAAACTTTGAATTTGGTTCTGAAC

Protein sequence

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MISTSNAKESEQSFTKRLKGVISSIMDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSF
YHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS

Carg21904 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome