; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg21935 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21935
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA-directed RNA polymerase III subunit RPC4-like
Genome locationCarg_Chr11:3273739..3276522
RNA-Seq ExpressionCarg21935
SyntenyCarg21935
Gene Ontology termsGO:0006383 - transcription by RNA polymerase III (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsIPR007811 - DNA-directed RNA polymerase III subunit RPC4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588073.1 DNA-directed RNA polymerase III subunit RPC4, partial [Cucurbita argyrosperma subsp. sororia]3.3e-15299.64Show/hide
Query:  MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFNVSAPTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDGTLPSSKEYVEPW
        MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFNVSAPTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDGTLPSSKEYVEPW
Subjt:  MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFNVSAPTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDGTLPSSKEYVEPW

Query:  DYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSLEQNKVSQPPQKTCS
        DYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSLEQNK SQPPQKTCS
Subjt:  DYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSLEQNKVSQPPQKTCS

Query:  LNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL
        LNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL
Subjt:  LNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL

KAG7021962.1 DNA-directed RNA polymerase III subunit RPC4, partial [Cucurbita argyrosperma subsp. argyrosperma]5.1e-153100Show/hide
Query:  MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFNVSAPTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDGTLPSSKEYVEPW
        MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFNVSAPTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDGTLPSSKEYVEPW
Subjt:  MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFNVSAPTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDGTLPSSKEYVEPW

Query:  DYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSLEQNKVSQPPQKTCS
        DYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSLEQNKVSQPPQKTCS
Subjt:  DYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSLEQNKVSQPPQKTCS

Query:  LNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL
        LNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL
Subjt:  LNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL

XP_022933797.1 DNA-directed RNA polymerase III subunit RPC4-like [Cucurbita moschata]2.2e-14894.85Show/hide
Query:  MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFN------------VSAPTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDG
        MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFN             +APTQVAFGTGGTSSSLRTYG SKAGNKLRNEDG
Subjt:  MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFN------------VSAPTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDG

Query:  TLPSSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSLEQ
        TLPSSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSLEQ
Subjt:  TLPSSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSLEQ

Query:  NKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL
        NKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL
Subjt:  NKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL

XP_022968121.1 uncharacterized protein LOC111467450 [Cucurbita maxima]6.7e-14593.13Show/hide
Query:  MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFN------------VSAPTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDG
        MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFN             +APTQVAFGTGGTSSSLRT+GFSKAGNKLRNEDG
Subjt:  MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFN------------VSAPTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDG

Query:  TLPSSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSLEQ
        TLP S+EYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASE+RTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSLEQ
Subjt:  TLPSSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSLEQ

Query:  NKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL
        NK SQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLG+IVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL
Subjt:  NKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL

XP_023529312.1 uncharacterized protein LOC111792200 [Cucurbita pepo subsp. pepo]5.7e-14492.49Show/hide
Query:  MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFN------------VSAPTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDG
        MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFN             +APTQVAFGTGGTSSSLRTYGFSKAGNKL+NEDG
Subjt:  MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFN------------VSAPTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDG

Query:  TLPSS--KEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSL
        TLPSS  KEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASE+RTYDENTTTPAMDLGLLEDN ETNIFFLQLPPMVPVTEQSSTAE MEAANSL
Subjt:  TLPSS--KEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSL

Query:  EQNKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL
        EQNK SQPPQKTC+LNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL
Subjt:  EQNKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL

TrEMBL top hitse value%identityAlignment
A0A0A0LWX7 Uncharacterized protein5.0e-12278.84Show/hide
Query:  MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFNVS------------APTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDG
        MEQ+P KN  AA RK+KFAPKAP RRIPK EVKAEV+E ADAAQARDLLKRFN S            APTQVAFG+GG+SS+LR+YG SKAGN+ RNEDG
Subjt:  MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFNVS------------APTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDG

Query:  TLP--SSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSL
        TLP  +SKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNE EFGEASE  TYDENTTT AM+LGLLE+NPE ++ FLQLPPMVP+ +QSS+ E M + NS 
Subjt:  TLP--SSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSL

Query:  EQNKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL
        EQNK SQP QKTCS+NE PSGS+GKLLVYRSGAVKLKLG+I+YDVSSGMDCGFAQE+AAINVEGKRCCIVGELSKRA+LTPDVDSMLKNIEDL
Subjt:  EQNKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL

A0A1S3BPR1 DNA-directed RNA polymerase III subunit RPC41.8e-11977.13Show/hide
Query:  MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFNVS------------APTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDG
        MEQDP KN  A  RK+KFAPKAP RR+PK EVKAE++E  DAAQARDLLKRFN S            APTQVAFG+GG+SS+LR+YG SKAGN+ RNEDG
Subjt:  MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFNVS------------APTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDG

Query:  TLP--SSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSL
        TLP  +SKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNE EFGEASE  TYDENTTT AM+LGLLE+NPET++FFLQLPPMVP+ +QSST E M + N  
Subjt:  TLP--SSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSL

Query:  EQNKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL
        EQN  SQ  QKTCS+NE PSGSMGKLLVYRSGAVKLKLG+I+YDVSSGMDCGFAQE+AAIN+EGK CCIVGELSKRA+LTPDVDSML+NIEDL
Subjt:  EQNKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL

A0A6J1D2P1 DNA-directed RNA polymerase III subunit rpc43.1e-12479.52Show/hide
Query:  MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFNVS------------APTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDG
        MEQDP KNN  AQRKMKFAPKAPPRR+PK EVKAE++E ADAAQA+DLLKRFN S            APTQVAFG+GGTS+++R+YG  KAGN+ RNEDG
Subjt:  MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFNVS------------APTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDG

Query:  TLPS--SKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSL
        TLPS  SKEYVEPWDYYSYYPVTLPLRRPYSG+PDSLNE EFGEASE RTYDE+ TTPAMDLGLLE+NPETN+FFLQ+PPMVPVT+QSST EGM AA+S 
Subjt:  TLPS--SKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSL

Query:  EQNKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL
        EQ+K S+  Q  CSLNE PSGSMGKLLVYRSGAVKLKLG+IVYDVSSGMDCGFAQ++AAINVEGK CCIVGELSKRA+LTPDVDSMLK+IEDL
Subjt:  EQNKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL

A0A6J1F0U0 DNA-directed RNA polymerase III subunit RPC4-like1.1e-14894.85Show/hide
Query:  MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFN------------VSAPTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDG
        MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFN             +APTQVAFGTGGTSSSLRTYG SKAGNKLRNEDG
Subjt:  MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFN------------VSAPTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDG

Query:  TLPSSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSLEQ
        TLPSSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSLEQ
Subjt:  TLPSSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSLEQ

Query:  NKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL
        NKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL
Subjt:  NKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL

A0A6J1HTZ8 uncharacterized protein LOC1114674503.2e-14593.13Show/hide
Query:  MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFN------------VSAPTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDG
        MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFN             +APTQVAFGTGGTSSSLRT+GFSKAGNKLRNEDG
Subjt:  MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFN------------VSAPTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDG

Query:  TLPSSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSLEQ
        TLP S+EYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASE+RTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSLEQ
Subjt:  TLPSSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSLEQ

Query:  NKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL
        NK SQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLG+IVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL
Subjt:  NKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL

SwissProt top hitse value%identityAlignment
O74857 DNA-directed RNA polymerase III subunit rpc44.0e-0737.5Show/hide
Query:  PSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPD
        P+G +G L V++SG   L++G + + V SG DC F QE+A ++ + KR   +G   +R +++PD
Subjt:  PSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPD

P05423 DNA-directed RNA polymerase III subunit RPC45.0e-1028.24Show/hide
Query:  ETNIFFLQLPPMV----------PVTEQSSTAEGMEAANSLEQNKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAA
        E  + FLQLP  +          P+  +    +G       E+++ ++  +  C+L +   G +GKLL+ +SG V+L LG +  DV+ G  C F QEL +
Subjt:  ETNIFFLQLPPMV----------PVTEQSSTAEGMEAANSLEQNKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAA

Query:  INVEGKR---CCIVGELSKRAVLTPDVDSML
        + +   R     ++G +  + V +PD +S+L
Subjt:  INVEGKR---CCIVGELSKRAVLTPDVDSML

Q5E9Z7 DNA-directed RNA polymerase III subunit RPC45.9e-1125.71Show/hide
Query:  AGNKLRNEDGTLPSSKEYVEPWDYYSYYPVTLPLR--RPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMV--------
        AG K  + +  +P+ K   EP D      +  PLR  R   G P  ++  E                    L  L    E  + FLQLP  +        
Subjt:  AGNKLRNEDGTLPSSKEYVEPWDYYSYYPVTLPLR--RPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMV--------

Query:  --PVTEQSSTAEGMEAANSLEQNKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKR---CCIVGELSKRA
          P+  +  + +G       E+++ ++  + TC+L +   G +GKLL+ +SG V+L LG +  DV+ G  C F QEL ++ +   R     ++G +  + 
Subjt:  --PVTEQSSTAEGMEAANSLEQNKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKR---CCIVGELSKRA

Query:  VLTPDVDSML
        V +P+ +S+L
Subjt:  VLTPDVDSML

Q8T1V7 DNA-directed RNA polymerase III subunit rpc42.8e-0533.33Show/hide
Query:  SLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEG-----KRCCIVGELSKRAVLTPDVDSM
        S+ E PSG +G L +Y+SG   LK+G + YD+SSG    F +E+     +G       C  +G  S+  V  P +  +
Subjt:  SLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEG-----KRCCIVGELSKRAVLTPDVDSM

Q91WD1 DNA-directed RNA polymerase III subunit RPC41.3e-1026.19Show/hide
Query:  AGNKLRNEDGTLPSSKEYVEPWDYYSYYPVTLPLR--RPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMV--------
        AG K  + +  +P+ K   EP D      V  P R  R   G P  ++  E                   +L L++D     + FLQLP  +        
Subjt:  AGNKLRNEDGTLPSSKEYVEPWDYYSYYPVTLPLR--RPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMV--------

Query:  --PVTEQSSTAEGMEAANSLEQNKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKR---CCIVGELSKRA
          PV  +    +G       E+++ ++  +  C+L +   G +GKLL+ +SG V+L LG +  DV+ G  C F QEL ++ +   R     ++G +  + 
Subjt:  --PVTEQSSTAEGMEAANSLEQNKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKR---CCIVGELSKRA

Query:  VLTPDVDSML
        V +PD +S+L
Subjt:  VLTPDVDSML

Arabidopsis top hitse value%identityAlignment
AT4G25180.1 RNA polymerase III RPC46.2e-3232.77Show/hide
Query:  PTKNNAAAQRKMKF-APKAPPRRI----PKTEVKAEVSEAADAAQARDLLKR--------------FNVSAPTQVAFGTGGTSSSLRTYGFSKAGNKLRN
        PT N  A + +    A +   RRI    PKTE KA   E A       L  R               N S+P  +       +++       + G ++ N
Subjt:  PTKNNAAAQRKMKF-APKAPPRRI----PKTEVKAEVSEAADAAQARDLLKR--------------FNVSAPTQVAFGTGGTSSSLRTYGFSKAGNKLRN

Query:  EDGTLPSSKEYVEPWDY-YSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLE-DNPETNIFFLQLPPMVPVTEQSSTAEGMEAA
              +  +YVEPWDY  SYYP  LPLR+P SG+ + L++ EFGE ++ R YDENT   A +LGL    + +  +F  ++P  +PV +Q++ A    + 
Subjt:  EDGTLPSSKEYVEPWDY-YSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLE-DNPETNIFFLQLPPMVPVTEQSSTAEGMEAA

Query:  NSLEQNKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL
               +S P          P G MGK+LVY+SGAVKLK+G+ ++DVS G       ++ AI+++G+ C  +G  +K   +TPDV+S+L    D+
Subjt:  NSLEQNKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL

AT5G09380.1 RNA polymerase III RPC41.4e-5544.14Show/hide
Query:  MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSE-AADAAQARDLLKRFN----------VSAPTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDGT
        MEQ P        RKMKFAPKAPP+R+PK EVK EV E  +++AQA +LL+R N             P       GG  +S R+  +    N       T
Subjt:  MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSE-AADAAQARDLLKRFN----------VSAPTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDGT

Query:  LPSSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSLEQN
             EY EPWDYYSYYP+TLP+RRPY+G+P+ L+  EF    +A  + E++   A +LGL+ED+ E  +FF++L P VP+   S+  E +E   +++  
Subjt:  LPSSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSLEQN

Query:  KVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL
              +KT  L   P G MGKLLVY+SGAVK+KLG ++YDVS G+   FAQ++  +N E K CC+VG++ K AVLTPD+DS+LK+IE++
Subjt:  KVSQPPQKTCSLNEFPSGSMGKLLVYRSGAVKLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCAAGATCCGACCAAAAACAACGCAGCTGCTCAAAGGAAGATGAAATTTGCTCCAAAAGCACCTCCTCGTCGTATACCAAAGACTGAAGTCAAAGCAGAAGTATC
AGAGGCCGCTGATGCTGCTCAAGCCAGGGATCTACTAAAACGCTTCAATGTATCGGCACCTACACAAGTTGCATTTGGTACTGGAGGCACATCAAGCTCCTTAAGAACAT
ATGGTTTTTCAAAAGCTGGAAATAAACTCAGAAATGAAGATGGAACTCTTCCGTCTAGTAAGGAGTATGTAGAACCGTGGGATTATTACAGTTATTATCCTGTAACTCTT
CCTTTACGGAGACCATATTCAGGAAATCCAGATTCTCTTAACGAGTATGAATTTGGAGAGGCTTCAGAAGCCAGAACCTATGATGAAAATACAACAACACCTGCAATGGA
TCTTGGTTTACTGGAGGATAATCCAGAAACAAACATCTTTTTTCTACAATTACCACCTATGGTGCCTGTGACAGAGCAATCTTCTACTGCCGAAGGCATGGAAGCAGCCA
ACAGCTTGGAACAAAATAAAGTTTCACAACCTCCACAGAAAACTTGCTCACTGAATGAGTTCCCTTCTGGCTCCATGGGTAAATTGCTCGTGTATAGGAGTGGTGCTGTC
AAGTTAAAGCTCGGCAACATCGTATACGATGTTTCTTCTGGAATGGATTGTGGCTTTGCACAAGAGCTTGCAGCTATCAATGTGGAAGGGAAGCGTTGCTGCATTGTTGG
GGAGCTCAGCAAGCGTGCCGTTTTAACACCAGATGTGGACTCCATGTTGAAGAACATCGAGGATTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCAAGATCCGACCAAAAACAACGCAGCTGCTCAAAGGAAGATGAAATTTGCTCCAAAAGCACCTCCTCGTCGTATACCAAAGACTGAAGTCAAAGCAGAAGTATC
AGAGGCCGCTGATGCTGCTCAAGCCAGGGATCTACTAAAACGCTTCAATGTATCGGCACCTACACAAGTTGCATTTGGTACTGGAGGCACATCAAGCTCCTTAAGAACAT
ATGGTTTTTCAAAAGCTGGAAATAAACTCAGAAATGAAGATGGAACTCTTCCGTCTAGTAAGGAGTATGTAGAACCGTGGGATTATTACAGTTATTATCCTGTAACTCTT
CCTTTACGGAGACCATATTCAGGAAATCCAGATTCTCTTAACGAGTATGAATTTGGAGAGGCTTCAGAAGCCAGAACCTATGATGAAAATACAACAACACCTGCAATGGA
TCTTGGTTTACTGGAGGATAATCCAGAAACAAACATCTTTTTTCTACAATTACCACCTATGGTGCCTGTGACAGAGCAATCTTCTACTGCCGAAGGCATGGAAGCAGCCA
ACAGCTTGGAACAAAATAAAGTTTCACAACCTCCACAGAAAACTTGCTCACTGAATGAGTTCCCTTCTGGCTCCATGGGTAAATTGCTCGTGTATAGGAGTGGTGCTGTC
AAGTTAAAGCTCGGCAACATCGTATACGATGTTTCTTCTGGAATGGATTGTGGCTTTGCACAAGAGCTTGCAGCTATCAATGTGGAAGGGAAGCGTTGCTGCATTGTTGG
GGAGCTCAGCAAGCGTGCCGTTTTAACACCAGATGTGGACTCCATGTTGAAGAACATCGAGGATTTATGATCGAAATTGACGGGAGTTATTGCTTTACCAAAGATTCGCG
AGGGAATAACAACAAACAAAAGATGGGTTAGTTTTTATTTATCTTTTGAGATGGTTTAGTTTTTCAAAACATCTTGGAATCCGATGCATAAGAGAAAAAGAAATT
Protein sequenceShow/hide protein sequence
MEQDPTKNNAAAQRKMKFAPKAPPRRIPKTEVKAEVSEAADAAQARDLLKRFNVSAPTQVAFGTGGTSSSLRTYGFSKAGNKLRNEDGTLPSSKEYVEPWDYYSYYPVTL
PLRRPYSGNPDSLNEYEFGEASEARTYDENTTTPAMDLGLLEDNPETNIFFLQLPPMVPVTEQSSTAEGMEAANSLEQNKVSQPPQKTCSLNEFPSGSMGKLLVYRSGAV
KLKLGNIVYDVSSGMDCGFAQELAAINVEGKRCCIVGELSKRAVLTPDVDSMLKNIEDL