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Carg21936 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21936
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionElf4-like
Genome locationCarg_Chr11:3267481..3270633
RNA-Seq ExpressionCarg21936
SyntenyCarg21936
Gene Ontology termsGO:0009649 - entrainment of circadian clock (biological process)
GO:0042753 - positive regulation of circadian rhythm (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR009741 - Protein EARLY FLOWERING 4 domain
IPR040462 - Protein EARLY FLOWERING 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7021961.1 Protein ELF4-LIKE 4 [Cucurbita argyrosperma subsp. argyrosperma]6.6e-54100Show/hide
Query:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRAGQG
        KSDGKAGQKRNRAGQG
Subjt:  KSDGKAGQKRNRAGQG

XP_004144022.1 protein ELF4-LIKE 4 [Cucumis sativus]3.4e-5096.46Show/hide
Query:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSG+GS+ QIDSKILQTF KNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRA
        KSDGKAGQKRNRA
Subjt:  KSDGKAGQKRNRA

XP_022147541.1 protein ELF4-LIKE 4 [Momordica charantia]3.9e-4691.96Show/hide
Query:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSG+GS AQID KILQ F KNFVQVQ+ILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLS +FTRS+EVSSEGDSSGAL
Subjt:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNR
        KSDGKAGQKRNR
Subjt:  KSDGKAGQKRNR

XP_022933909.1 protein ELF4-LIKE 4-like [Cucurbita moschata]2.1e-52100Show/hide
Query:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRA
        KSDGKAGQKRNRA
Subjt:  KSDGKAGQKRNRA

XP_022961237.1 protein ELF4-LIKE 4-like [Cucurbita moschata]2.0e-5096.46Show/hide
Query:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSG+GS+AQID+KILQTF KNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRA
        KSDGKAGQKRNRA
Subjt:  KSDGKAGQKRNRA

TrEMBL top hitse value%identityAlignment
A0A1S3BQA6 protein ELF4-LIKE 41.6e-5096.46Show/hide
Query:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSG+GS+ QIDSKILQTF KNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRA
        KSDGKAGQKRNRA
Subjt:  KSDGKAGQKRNRA

A0A6J1F126 protein ELF4-LIKE 4-like1.0e-52100Show/hide
Query:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRA
        KSDGKAGQKRNRA
Subjt:  KSDGKAGQKRNRA

A0A6J1H9N1 protein ELF4-LIKE 4-like9.6e-5196.46Show/hide
Query:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSG+GS+AQID+KILQTF KNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRA
        KSDGKAGQKRNRA
Subjt:  KSDGKAGQKRNRA

A0A6J1I047 protein ELF4-LIKE 4-like1.0e-52100Show/hide
Query:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRA
        KSDGKAGQKRNRA
Subjt:  KSDGKAGQKRNRA

A0A6J1JGF0 protein ELF4-LIKE 4-like9.6e-5196.46Show/hide
Query:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSG+GS+AQID+KILQTF KNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRA
        KSDGKAGQKRNRA
Subjt:  KSDGKAGQKRNRA

SwissProt top hitse value%identityAlignment
O04211 Protein EARLY FLOWERING 42.0e-1342.17Show/hide
Query:  DSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSG
        D  + +   +NF QVQ++LD+N+ LI ++N NH+S++ DN+++NV LI+ELN NI +VV++Y+DL+ SF+        G   G
Subjt:  DSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSG

O80877 Protein ELF4-LIKE 13.4e-1340Show/hide
Query:  EGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSME----VSSEGDSS
        E D      S A  D ++  T    F + Q  LDQN+ LI  +N+NH S+IPDN++RNVGLI E+N NI +V+++Y+DLS +F +  +     + +GD++
Subjt:  EGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSME----VSSEGDSS

Q570U6 Protein ELF4-LIKE 45.8e-3771.05Show/hide
Query:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGD  SG G    +D K+LQ+F K+FV VQ+ILDQN+LLI+EINQNHESK PDNL RNVGLI+ELNNNIRRV  LY DLS SF RS++ SSEG+SSG L
Subjt:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRAG
        KSDGKA QKR R+G
Subjt:  KSDGKAGQKRNRAG

Q8S8F5 Protein ELF4-LIKE 33.9e-3376.53Show/hide
Query:  MEGDTFSG-IGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSS
        MEGDT S  +GS  Q+D KILQTF K+FVQVQNILD N+LLI+EINQNHESKIPDNL RNVGLIRELNNN+RRV  LY DLS +F++SME SSEGDSS
Subjt:  MEGDTFSG-IGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSS

Q94BS8 Protein ELF4-LIKE 29.3e-3569.57Show/hide
Query:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGD +SG G   Q+D K+LQ F K+FVQVQ+ILDQN+LLI+EINQNHESK  D+L RNVGLIRELNNNIR V  LY DLS SF RS++ SSEG+S+G L
Subjt:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKA-GQKRNRAG
        KSDGKA  QKR R+G
Subjt:  KSDGKA-GQKRNRAG

Arabidopsis top hitse value%identityAlignment
AT1G17455.1 ELF4-like 44.1e-3871.05Show/hide
Query:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGD  SG G    +D K+LQ+F K+FV VQ+ILDQN+LLI+EINQNHESK PDNL RNVGLI+ELNNNIRRV  LY DLS SF RS++ SSEG+SSG L
Subjt:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRAG
        KSDGKA QKR R+G
Subjt:  KSDGKAGQKRNRAG

AT1G17455.2 ELF4-like 44.1e-3871.05Show/hide
Query:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGD  SG G    +D K+LQ+F K+FV VQ+ILDQN+LLI+EINQNHESK PDNL RNVGLI+ELNNNIRRV  LY DLS SF RS++ SSEG+SSG L
Subjt:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRAG
        KSDGKA QKR R+G
Subjt:  KSDGKAGQKRNRAG

AT1G72630.1 ELF4-like 26.6e-3669.57Show/hide
Query:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGD +SG G   Q+D K+LQ F K+FVQVQ+ILDQN+LLI+EINQNHESK  D+L RNVGLIRELNNNIR V  LY DLS SF RS++ SSEG+S+G L
Subjt:  MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKA-GQKRNRAG
        KSDGKA  QKR R+G
Subjt:  KSDGKA-GQKRNRAG

AT2G06255.1 ELF4-like 32.8e-3476.53Show/hide
Query:  MEGDTFSG-IGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSS
        MEGDT S  +GS  Q+D KILQTF K+FVQVQNILD N+LLI+EINQNHESKIPDNL RNVGLIRELNNN+RRV  LY DLS +F++SME SSEGDSS
Subjt:  MEGDTFSG-IGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSS

AT2G40080.1 Protein of unknown function (DUF1313)1.4e-1442.17Show/hide
Query:  DSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSG
        D  + +   +NF QVQ++LD+N+ LI ++N NH+S++ DN+++NV LI+ELN NI +VV++Y+DL+ SF+        G   G
Subjt:  DSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGCGACACATTTTCAGGGATTGGGAGTACTGCACAGATCGATAGCAAGATTTTACAGACATTTCATAAGAACTTTGTTCAAGTTCAAAACATATTGGATCAAAA
CAAGCTGCTGATTAGCGAGATAAACCAAAACCACGAATCAAAGATCCCTGATAATCTAAACAGAAATGTGGGTCTGATCCGAGAATTAAACAACAATATCAGGAGGGTTG
TTGACTTATATGCTGATCTTTCATGTTCCTTCACCAGATCCATGGAAGTTTCTTCAGAAGGTGATTCCAGTGGAGCCTTGAAGTCAGATGGTAAAGCAGGCCAGAAGAGG
AACAGGGCTGGACAAGGGTAA
mRNA sequenceShow/hide mRNA sequence
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGTTGTAATTCTCAAGGATTCAGAGAGCGGGGGCGGTAGGGGCGGTAGGGGCTTGTTTCGGAGAT
TCCATTGAAGCCGCGAACCTTTTCTCTTCTCTTTGGATTTCTGTGTTCTTTGTGTGCTTTCCTTTTGCCCTTTTGCTTTTCTCTCTTCCTTTATACTGCGCTCCTCGTCC
TTCCGAACCATTTTTTCATTTTTCAATCCGTGTGTATCTTCTTCTCTCCCGATGTAATGTTCCAGATTTTCAAGAAGATTCTGATTTGATAGACTTCTCAGCTGTAAAAC
TATGGAGGGCGACACATTTTCAGGGATTGGGAGTACTGCACAGATCGATAGCAAGATTTTACAGACATTTCATAAGAACTTTGTTCAAGTTCAAAACATATTGGATCAAA
ACAAGCTGCTGATTAGCGAGATAAACCAAAACCACGAATCAAAGATCCCTGATAATCTAAACAGAAATGTGGGTCTGATCCGAGAATTAAACAACAATATCAGGAGGGTT
GTTGACTTATATGCTGATCTTTCATGTTCCTTCACCAGATCCATGGAAGTTTCTTCAGAAGGTGATTCCAGTGGAGCCTTGAAGTCAGATGGTAAAGCAGGCCAGAAGAG
GAACAGGGCTGGACAAGGGTAA
Protein sequenceShow/hide protein sequence
MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKR
NRAGQG