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Carg21941 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21941
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionWD repeat-containing protein VIP3
Genome locationCarg_Chr11:3228795..3230119
RNA-Seq ExpressionCarg21941
SyntenyCarg21941
Gene Ontology termsGO:0051568 - histone H3-K4 methylation (biological process)
GO:0016593 - Cdc73/Paf1 complex (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR036322 - WD40-repeat-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590017.1 WD repeat-containing protein VIP3, partial [Cucurbita argyrosperma subsp. sororia]1.4e-4474.24Show/hide
Query:  SFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQMR--------------NFCVRVP
        S L+TGSLDETVKLWKSDELDLDR NTGHCLGVVSV AHPSGY+AASASLDSFVR+FEV SNSTIATLEAPPSEVWQMR              +  +++ 
Subjt:  SFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQMR--------------NFCVRVP

Query:  CHETDTNTWKLAATLSIPRPEGPKPTDKTACK
            DT+TWKLAATLSIPRPEGPKPTDKTA K
Subjt:  CHETDTNTWKLAATLSIPRPEGPKPTDKTACK

KAG7021956.1 WD repeat-containing protein VIP3, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-68100Show/hide
Query:  MPQIIASSFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQMRNFCVRVPCHETDTN
        MPQIIASSFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQMRNFCVRVPCHETDTN
Subjt:  MPQIIASSFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQMRNFCVRVPCHETDTN

Query:  TWKLAATLSIPRPEGPKPTDKTACKILYFQ
        TWKLAATLSIPRPEGPKPTDKTACKILYFQ
Subjt:  TWKLAATLSIPRPEGPKPTDKTACKILYFQ

XP_022960889.1 WD repeat-containing protein VIP3 [Cucurbita moschata]1.4e-4474.24Show/hide
Query:  SFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQMR--------------NFCVRVP
        S L+TGSLDETVKLWKSDELDLDR NTGHCLGVVSV AHPSGY+AASASLDSFVR+FEV SNSTIATLEAPPSEVWQMR              +  +++ 
Subjt:  SFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQMR--------------NFCVRVP

Query:  CHETDTNTWKLAATLSIPRPEGPKPTDKTACK
            DT+TWKLAATLSIPRPEGPKPTDKTA K
Subjt:  CHETDTNTWKLAATLSIPRPEGPKPTDKTACK

XP_022987787.1 WD repeat-containing protein VIP3 [Cucurbita maxima]1.4e-4474.24Show/hide
Query:  SFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQMR--------------NFCVRVP
        S L+TGSLDETVKLWKSDELDLDR NTGHCLGVVSV AHPSGY+AASASLDSFVR+FEV SNSTIATLEAPPSEVWQMR              +  +++ 
Subjt:  SFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQMR--------------NFCVRVP

Query:  CHETDTNTWKLAATLSIPRPEGPKPTDKTACK
            DT+TWKLAATLSIPRPEGPKPTDKTA K
Subjt:  CHETDTNTWKLAATLSIPRPEGPKPTDKTACK

XP_038878969.1 WD repeat-containing protein VIP3 [Benincasa hispida]1.8e-4475Show/hide
Query:  SFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQMR--------------NFCVRVP
        S LLTGSLDETVKLWKSDELDL+R NTGHCLGVVSV AHPSG++AASASLDSFVRVFEV SNSTIATLEAPPSEVWQMR              +  +++ 
Subjt:  SFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQMR--------------NFCVRVP

Query:  CHETDTNTWKLAATLSIPRPEGPKPTDKTACK
            DTNTWKLAATLSIPRPEGPKPTDKTA K
Subjt:  CHETDTNTWKLAATLSIPRPEGPKPTDKTACK

TrEMBL top hitse value%identityAlignment
A0A0A0LWK2 WD_REPEATS_REGION domain-containing protein8.8e-4575Show/hide
Query:  SFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQMR--------------NFCVRVP
        S LLTGSLDETVKLWKSDELDL+R NTGHCLGVVSV AHPSG++AASASLDSFVRVFEV SNSTIATLEAPPSEVWQMR              +  +++ 
Subjt:  SFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQMR--------------NFCVRVP

Query:  CHETDTNTWKLAATLSIPRPEGPKPTDKTACK
            DTNTWKLAATLSIPRPEGPKPTDKTA K
Subjt:  CHETDTNTWKLAATLSIPRPEGPKPTDKTACK

A0A1S3BQZ8 WD repeat-containing protein VIP38.8e-4575Show/hide
Query:  SFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQMR--------------NFCVRVP
        S LLTGSLDETVKLWKSDELDL+R NTGHCLGVVSV AHPSG++AASASLDSFVRVFEV SNSTIATLEAPPSEVWQMR              +  +++ 
Subjt:  SFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQMR--------------NFCVRVP

Query:  CHETDTNTWKLAATLSIPRPEGPKPTDKTACK
            DTNTWKLAATLSIPRPEGPKPTDKTA K
Subjt:  CHETDTNTWKLAATLSIPRPEGPKPTDKTACK

A0A5D3CFF6 WD repeat-containing protein VIP38.8e-4575Show/hide
Query:  SFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQMR--------------NFCVRVP
        S LLTGSLDETVKLWKSDELDL+R NTGHCLGVVSV AHPSG++AASASLDSFVRVFEV SNSTIATLEAPPSEVWQMR              +  +++ 
Subjt:  SFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQMR--------------NFCVRVP

Query:  CHETDTNTWKLAATLSIPRPEGPKPTDKTACK
            DTNTWKLAATLSIPRPEGPKPTDKTA K
Subjt:  CHETDTNTWKLAATLSIPRPEGPKPTDKTACK

A0A6J1HCE5 WD repeat-containing protein VIP36.7e-4574.24Show/hide
Query:  SFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQMR--------------NFCVRVP
        S L+TGSLDETVKLWKSDELDLDR NTGHCLGVVSV AHPSGY+AASASLDSFVR+FEV SNSTIATLEAPPSEVWQMR              +  +++ 
Subjt:  SFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQMR--------------NFCVRVP

Query:  CHETDTNTWKLAATLSIPRPEGPKPTDKTACK
            DT+TWKLAATLSIPRPEGPKPTDKTA K
Subjt:  CHETDTNTWKLAATLSIPRPEGPKPTDKTACK

A0A6J1JBB4 WD repeat-containing protein VIP36.7e-4574.24Show/hide
Query:  SFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQMR--------------NFCVRVP
        S L+TGSLDETVKLWKSDELDLDR NTGHCLGVVSV AHPSGY+AASASLDSFVR+FEV SNSTIATLEAPPSEVWQMR              +  +++ 
Subjt:  SFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQMR--------------NFCVRVP

Query:  CHETDTNTWKLAATLSIPRPEGPKPTDKTACK
            DT+TWKLAATLSIPRPEGPKPTDKTA K
Subjt:  CHETDTNTWKLAATLSIPRPEGPKPTDKTACK

SwissProt top hitse value%identityAlignment
Q5ZJH5 WD repeat-containing protein 618.8e-1039.51Show/hide
Query:  SSFLLTGSLDETVKLWK--SDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQM
        S  +++GSLD+ VK+WK   ++LDL     GH LGVVSV    +G +AAS+SLD+ +R++++ +   I +++A P + W +
Subjt:  SSFLLTGSLDETVKLWK--SDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQM

Q6GMD2 WD repeat-containing protein 614.7e-1144.44Show/hide
Query:  SSFLLTGSLDETVKLWK-SDE-LDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQM
        S  +++GSLD+ VK+WK SDE L++  A  GH LGVVSV   PSG + AS+SLD+ +R++++ S   I +++A P + W +
Subjt:  SSFLLTGSLDETVKLWK-SDE-LDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQM

Q6P5M2 WD repeat-containing protein 618.8e-1044.3Show/hide
Query:  SSFLLTGSLDETVKLWK-SDE-LDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVW
        S  ++TGSLD+ VK+WK SDE L+L     GH LGVVSV    +G +AAS+SLD+ +R++++ +   I +++A P + W
Subjt:  SSFLLTGSLDETVKLWK-SDE-LDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVW

Q6PBD6 WD repeat-containing protein 616.1e-1144.44Show/hide
Query:  SSFLLTGSLDETVKLWK-SDE-LDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQM
        S  +++GSLD+ VK+WK SDE L+L     GH LGVVSV   PSG + AS+SLD+ +R++++ S   I  ++A P + W +
Subjt:  SSFLLTGSLDETVKLWK-SDE-LDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQM

Q9SZQ5 WD repeat-containing protein VIP34.7e-3559.38Show/hide
Query:  SFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQM----RNFCVRVPCHET------
        + LLTGSLDETVKLW+ DELDL R NTGH LGV ++ AHPSG +AAS+S+DSFVRVF+V +N+TIA LEAPPSEVW M    +   + V    +      
Subjt:  SFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQM----RNFCVRVPCHET------

Query:  DTNTWKLAATLSIPRPEGPKPTDKTACK
        DT +W+L +TLSIPRP+ PKP+DKT+ K
Subjt:  DTNTWKLAATLSIPRPEGPKPTDKTACK

Arabidopsis top hitse value%identityAlignment
AT1G11160.1 Transducin/WD40 repeat-like superfamily protein2.6e-0432.14Show/hide
Query:  LLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEV----------GSNSTIATLEAPPSEVW
        +L G+    +KLW  +E  + RA TGH     +V  HP G   AS S D+ +RV++           G    I+T+E  P   W
Subjt:  LLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEV----------GSNSTIATLEAPPSEVW

AT4G29830.1 Transducin/WD40 repeat-like superfamily protein3.3e-3659.38Show/hide
Query:  SFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQM----RNFCVRVPCHET------
        + LLTGSLDETVKLW+ DELDL R NTGH LGV ++ AHPSG +AAS+S+DSFVRVF+V +N+TIA LEAPPSEVW M    +   + V    +      
Subjt:  SFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQM----RNFCVRVPCHET------

Query:  DTNTWKLAATLSIPRPEGPKPTDKTACK
        DT +W+L +TLSIPRP+ PKP+DKT+ K
Subjt:  DTNTWKLAATLSIPRPEGPKPTDKTACK

AT5G08390.1 Transducin/WD40 repeat-like superfamily protein5.2e-0533.33Show/hide
Query:  ASSFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIAT
        +   +  G+   T+KLW  +E  + R  TGH    VSV  HP G   AS SLD+ ++++++     I T
Subjt:  ASSFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIAT

AT5G23430.1 Transducin/WD40 repeat-like superfamily protein6.7e-0535.48Show/hide
Query:  GSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIAT
        G+   T+KLW  +E  + R  TGH    +SV  HP G   AS SLD+ ++++++     I T
Subjt:  GSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIAT

AT5G23430.2 Transducin/WD40 repeat-like superfamily protein6.7e-0535.48Show/hide
Query:  GSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIAT
        G+   T+KLW  +E  + R  TGH    +SV  HP G   AS SLD+ ++++++     I T
Subjt:  GSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIAT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACAGATAATCGCTTCCTCCTTCCTCCTCACCGGCTCCCTCGATGAGACCGTCAAGCTCTGGAAATCTGACGAGCTTGACTTGGACCGCGCCAACACCGGCCACTG
CCTTGGCGTCGTCTCTGTTGTTGCTCATCCTTCCGGTTACGTTGCTGCCTCCGCTTCTCTCGATAGCTTTGTTCGCGTATTTGAGGTTGGTTCCAATTCCACTATCGCAA
CTCTCGAGGCGCCGCCGTCTGAGGTCTGGCAAATGCGTAACTTCTGCGTCAGGGTACCATGTCATGAGACAGATACAAACACATGGAAACTGGCTGCAACTCTATCAATT
CCTCGTCCAGAAGGACCTAAACCCACTGATAAAACTGCTTGCAAAATTCTGTACTTTCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCACAGATAATCGCTTCCTCCTTCCTCCTCACCGGCTCCCTCGATGAGACCGTCAAGCTCTGGAAATCTGACGAGCTTGACTTGGACCGCGCCAACACCGGCCACTG
CCTTGGCGTCGTCTCTGTTGTTGCTCATCCTTCCGGTTACGTTGCTGCCTCCGCTTCTCTCGATAGCTTTGTTCGCGTATTTGAGGTTGGTTCCAATTCCACTATCGCAA
CTCTCGAGGCGCCGCCGTCTGAGGTCTGGCAAATGCGTAACTTCTGCGTCAGGGTACCATGTCATGAGACAGATACAAACACATGGAAACTGGCTGCAACTCTATCAATT
CCTCGTCCAGAAGGACCTAAACCCACTGATAAAACTGCTTGCAAAATTCTGTACTTTCAGTAG
Protein sequenceShow/hide protein sequence
MPQIIASSFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQMRNFCVRVPCHETDTNTWKLAATLSI
PRPEGPKPTDKTACKILYFQ