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Carg21954 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21954
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description30S ribosomal protein S16
Genome locationCarg_Chr11:3163040..3165256
RNA-Seq ExpressionCarg21954
SyntenyCarg21954
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006334 - nucleosome assembly (biological process)
GO:0006412 - translation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008094 - DNA-dependent ATPase activity (molecular function)
InterPro domainsIPR000307 - Ribosomal protein S16
IPR023803 - Ribosomal protein S16 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588049.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]9.0e-68100Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT

Query:  RPVDPLSGRFTTPQKATDDSNSSKDGDADS
        RPVDPLSGRFTTPQKATDDSNSSKDGDADS
Subjt:  RPVDPLSGRFTTPQKATDDSNSSKDGDADS

XP_022147743.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia]1.9e-6293.85Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT
        MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPS+PVQRILFRAGVLPPPPM AMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT

Query:  RPVDPLSGRFTTPQKATDDSNSSKDGDADS
        RPVDPLSGRF TP+K TDDS SSKDG+ADS
Subjt:  RPVDPLSGRFTTPQKATDDSNSSKDGDADS

XP_022933978.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita moschata]3.8e-6697.69Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPM AMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT

Query:  RPVDPLSGRFTTPQKATDDSNSSKDGDADS
        RPVDPLSGRFTTPQKATDDSNSSKDG+ADS
Subjt:  RPVDPLSGRFTTPQKATDDSNSSKDGDADS

XP_022968515.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita maxima]2.6e-6799.23Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPM AMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT

Query:  RPVDPLSGRFTTPQKATDDSNSSKDGDADS
        RPVDPLSGRFTTPQKATDDSNSSKDGDADS
Subjt:  RPVDPLSGRFTTPQKATDDSNSSKDGDADS

XP_023529314.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo]6.4e-6696.92Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPM AMARKGGPRD+
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT

Query:  RPVDPLSGRFTTPQKATDDSNSSKDGDADS
        RPVDPLSGRFTTPQKATDDSNS+KDG+ADS
Subjt:  RPVDPLSGRFTTPQKATDDSNSSKDGDADS

TrEMBL top hitse value%identityAlignment
A0A1S3BQ70 30S ribosomal protein S163.3e-6087.69Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVKYWLSVGAQPSDP+QRILFRAG+LPPPPM AM RKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT

Query:  RPVDPLSGRFTTPQKATDDSNSSKDGDADS
        RPVDPLSGRF TP+K   DS++ + GDADS
Subjt:  RPVDPLSGRFTTPQKATDDSNSSKDGDADS

A0A5D3CDW9 30S ribosomal protein S163.3e-6087.69Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVKYWLSVGAQPSDP+QRILFRAG+LPPPPM AM RKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT

Query:  RPVDPLSGRFTTPQKATDDSNSSKDGDADS
        RPVDPLSGRF TP+K   DS++ + GDADS
Subjt:  RPVDPLSGRFTTPQKATDDSNSSKDGDADS

A0A6J1D251 30S ribosomal protein S16-2, chloroplastic/mitochondrial9.4e-6393.85Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT
        MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPS+PVQRILFRAGVLPPPPM AMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT

Query:  RPVDPLSGRFTTPQKATDDSNSSKDGDADS
        RPVDPLSGRF TP+K TDDS SSKDG+ADS
Subjt:  RPVDPLSGRFTTPQKATDDSNSSKDGDADS

A0A6J1F6D0 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like1.8e-6697.69Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPM AMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT

Query:  RPVDPLSGRFTTPQKATDDSNSSKDGDADS
        RPVDPLSGRFTTPQKATDDSNSSKDG+ADS
Subjt:  RPVDPLSGRFTTPQKATDDSNSSKDGDADS

A0A6J1HXD7 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like1.3e-6799.23Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPM AMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT

Query:  RPVDPLSGRFTTPQKATDDSNSSKDGDADS
        RPVDPLSGRFTTPQKATDDSNSSKDGDADS
Subjt:  RPVDPLSGRFTTPQKATDDSNSSKDGDADS

SwissProt top hitse value%identityAlignment
A5V9P7 30S ribosomal protein S164.2e-2056.1Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGV
        M V IRL+R G K +P+YR++ AD+RSPRDG  +E +G YNPL  +D  KR+ L+ +R K+WLSVGAQP+D V R L  AGV
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGV

A8LMC0 30S ribosomal protein S164.2e-2054.76Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLP
        M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D   R+ ++ ERV+YWL  GA+P+D V R+L  A VLP
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLP

O65686 30S ribosomal protein S16-1, chloroplastic4.1e-3155.05Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT
        M V+IRL+R GCK++PFYRV+ AD +S RDGK +EVLG+Y+PL G++   R+ L F+R+KYWLSVGAQP+D V+ +LFRAG++PP PM  +  K G + T
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT

Query:  -RPVDPLSG
         + V P++G
Subjt:  -RPVDPLSG

Q5LNF2 30S ribosomal protein S163.2e-2055.42Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVL
        M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+YWLS GAQ +D V R+L  AGV+
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVL

Q9LTS6 30S ribosomal protein S16-2, chloroplastic/mitochondrial2.0e-5475.38Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT
        MVVRIRLSRFGCKN+PF+RVMAADSRSPRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+KYWLSVGAQPSDPVQR+LFR+G+LPPPPM AM RKGG RDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT

Query:  RPVDPLSGRFTTPQKATDDSNSSKDGDADS
        RPVDP++GR+   +  T ++N ++  + D+
Subjt:  RPVDPLSGRFTTPQKATDDSNSSKDGDADS

Arabidopsis top hitse value%identityAlignment
AT4G34620.1 small subunit ribosomal protein 162.9e-3255.05Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT
        M V+IRL+R GCK++PFYRV+ AD +S RDGK +EVLG+Y+PL G++   R+ L F+R+KYWLSVGAQP+D V+ +LFRAG++PP PM  +  K G + T
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT

Query:  -RPVDPLSG
         + V P++G
Subjt:  -RPVDPLSG

AT5G56940.1 Ribosomal protein S16 family protein1.4e-5575.38Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT
        MVVRIRLSRFGCKN+PF+RVMAADSRSPRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+KYWLSVGAQPSDPVQR+LFR+G+LPPPPM AM RKGG RDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT

Query:  RPVDPLSGRFTTPQKATDDSNSSKDGDADS
        RPVDP++GR+   +  T ++N ++  + D+
Subjt:  RPVDPLSGRFTTPQKATDDSNSSKDGDADS

ATCG00050.1 ribosomal protein S165.0e-0834.57Show/hide
Query:  VVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGV
        +V++RL R G K +  YR++A D R  R+G+ L  +G+Y+P+  Q       LN   +  +L  GAQP+     I  +AG+
Subjt:  VVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTGAGAATTCGATTGTCGAGGTTTGGATGTAAGAACAAGCCGTTTTACAGGGTGATGGCTGCCGATAGCCGATCTCCTAGAGACGGCAAGCATCTCGAGGTTCT
AGGTTACTATAATCCCTTGCCAGGTCAAGATGGCGGTAAACGAATGGGTCTTAATTTTGAAAGAGTGAAGTATTGGCTTTCAGTTGGTGCTCAACCTTCAGATCCTGTGC
AGCGAATTCTTTTTAGAGCAGGGGTACTTCCACCACCCCCAATGGCTGCAATGGCACGTAAAGGTGGACCACGTGATACTCGTCCTGTTGATCCTCTTAGCGGACGCTTC
ACAACTCCACAGAAGGCAACTGATGATTCCAATAGCAGCAAAGATGGGGACGCTGATTCATAA
mRNA sequenceShow/hide mRNA sequence
AGGAGCCCCCCGGGAGGGGAGGCGGCAGGCGCGACTTTGGATAAATCTGTGTCATTTCAGTTTGGCGAATTTACAGGGTTTTACGAGCTCAAAAATGGTGGTGAGAATTC
GATTGTCGAGGTTTGGATGTAAGAACAAGCCGTTTTACAGGGTGATGGCTGCCGATAGCCGATCTCCTAGAGACGGCAAGCATCTCGAGGTTCTAGGTTACTATAATCCC
TTGCCAGGTCAAGATGGCGGTAAACGAATGGGTCTTAATTTTGAAAGAGTGAAGTATTGGCTTTCAGTTGGTGCTCAACCTTCAGATCCTGTGCAGCGAATTCTTTTTAG
AGCAGGGGTACTTCCACCACCCCCAATGGCTGCAATGGCACGTAAAGGTGGACCACGTGATACTCGTCCTGTTGATCCTCTTAGCGGACGCTTCACAACTCCACAGAAGG
CAACTGATGATTCCAATAGCAGCAAAGATGGGGACGCTGATTCATAA
Protein sequenceShow/hide protein sequence
MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDTRPVDPLSGRF
TTPQKATDDSNSSKDGDADS