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Carg21964 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21964
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionWD repeat containing protein
Genome locationCarg_Chr11:3084227..3087037
RNA-Seq ExpressionCarg21964
SyntenyCarg21964
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588036.1 hypothetical protein SDJN03_16601, partial [Cucurbita argyrosperma subsp. sororia]5.8e-64100Show/hide
Query:  MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTEN
        MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTEN
Subjt:  MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTEN

Query:  ISEDQHQKPFHWIVDGWREKTGSSKK
        ISEDQHQKPFHWIVDGWREKTGSSKK
Subjt:  ISEDQHQKPFHWIVDGWREKTGSSKK

XP_004135711.1 uncharacterized protein LOC101210247 isoform X1 [Cucumis sativus]5.3e-3364.57Show/hide
Query:  MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIM-EIPSTFMVDTTGIVTE
        M DPRA L S SS   LPPND LP+RFKV+WRVLLISNFALSAYMFASARK+   Q+END+            +EK SDSEI+ EIPST MVDTTGIVTE
Subjt:  MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIM-EIPSTFMVDTTGIVTE

Query:  NISEDQHQKPFHWIVDGWREKTGSSKK
        N+ EDQ Q+P   +V GWREK G S+K
Subjt:  NISEDQHQKPFHWIVDGWREKTGSSKK

XP_022926648.1 uncharacterized protein LOC111433716 [Cucurbita moschata]3.2e-6298.41Show/hide
Query:  MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTEN
        MADPRASLSSLSSPPSL PNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMEN+EAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTEN
Subjt:  MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTEN

Query:  ISEDQHQKPFHWIVDGWREKTGSSKK
        ISEDQHQKPFHWIVDGWREKTGSSKK
Subjt:  ISEDQHQKPFHWIVDGWREKTGSSKK

XP_022968528.1 uncharacterized protein LOC111467730 isoform X1 [Cucurbita maxima]8.4e-6398.41Show/hide
Query:  MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTEN
        MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQME+DEAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTEN
Subjt:  MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTEN

Query:  ISEDQHQKPFHWIVDGWREKTGSSKK
        I EDQHQKPFHWIVDGWREKTGSSKK
Subjt:  ISEDQHQKPFHWIVDGWREKTGSSKK

XP_023530326.1 uncharacterized protein LOC111792930 [Cucurbita pepo subsp. pepo]2.9e-6399.21Show/hide
Query:  MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTEN
        MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIMEIPST MVDTTGIVTEN
Subjt:  MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTEN

Query:  ISEDQHQKPFHWIVDGWREKTGSSKK
        ISEDQHQKPFHWIVDGWREKTGSSKK
Subjt:  ISEDQHQKPFHWIVDGWREKTGSSKK

TrEMBL top hitse value%identityAlignment
A0A0A0M1X9 Uncharacterized protein2.6e-3364.57Show/hide
Query:  MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIM-EIPSTFMVDTTGIVTE
        M DPRA L S SS   LPPND LP+RFKV+WRVLLISNFALSAYMFASARK+   Q+END+            +EK SDSEI+ EIPST MVDTTGIVTE
Subjt:  MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIM-EIPSTFMVDTTGIVTE

Query:  NISEDQHQKPFHWIVDGWREKTGSSKK
        N+ EDQ Q+P   +V GWREK G S+K
Subjt:  NISEDQHQKPFHWIVDGWREKTGSSKK

A0A1S3BR82 uncharacterized protein LOC1034923202.0e-3060.63Show/hide
Query:  MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIM-EIPSTFMVDTTGIVTE
        M   R  L S SS   LPPND LP+RFKV+WR+LLISNFALSAYMFASARK+   ++END+            +EK SDSEI+ EIPST MVDTTGIVTE
Subjt:  MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIM-EIPSTFMVDTTGIVTE

Query:  NISEDQHQKPFHWIVDGWREKTGSSKK
        N+ EDQ Q+P   +V GWREK G S+K
Subjt:  NISEDQHQKPFHWIVDGWREKTGSSKK

A0A6J1D315 uncharacterized protein LOC1110165441.1e-2864.35Show/hide
Query:  MADPRASL-SSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIM-EIPSTFMVDTTGIVT
        M DPRA L SS S PP LPPND LPRRFKV+WRVLLISNFAL+AYMFA+ARKKDLG+ME D             +EK SD E+M  IPST MVDTT I  
Subjt:  MADPRASL-SSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIM-EIPSTFMVDTTGIVT

Query:  ENISEDQHQKPFHWI
        ENISED  ++PF W+
Subjt:  ENISEDQHQKPFHWI

A0A6J1EIP0 uncharacterized protein LOC1114337161.5e-6298.41Show/hide
Query:  MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTEN
        MADPRASLSSLSSPPSL PNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMEN+EAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTEN
Subjt:  MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTEN

Query:  ISEDQHQKPFHWIVDGWREKTGSSKK
        ISEDQHQKPFHWIVDGWREKTGSSKK
Subjt:  ISEDQHQKPFHWIVDGWREKTGSSKK

A0A6J1HYA0 uncharacterized protein LOC111467730 isoform X14.1e-6398.41Show/hide
Query:  MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTEN
        MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQME+DEAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTEN
Subjt:  MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTEN

Query:  ISEDQHQKPFHWIVDGWREKTGSSKK
        I EDQHQKPFHWIVDGWREKTGSSKK
Subjt:  ISEDQHQKPFHWIVDGWREKTGSSKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGACCCACGAGCATCACTGTCATCTCTATCTTCACCGCCGTCTTTGCCTCCCAATGATCAGCTACCCAGACGCTTCAAGGTCGTCTGGCGCGTTCTACTGATCTC
CAATTTCGCCCTTTCAGCCTACATGTTTGCAAGTGCAAGGAAGAAGGACTTGGGGCAAATGGAGAATGATGAAGCAGAAAAAGATTTGGGTCAACTGGAAAATGATGGAA
TAGAAAAATGCAGTGATAGTGAAATAATGGAAATACCCTCAACGTTTATGGTGGATACCACTGGCATAGTTACAGAGAACATCTCGGAAGATCAGCACCAAAAACCATTC
CACTGGATTGTCGATGGTTGGAGAGAAAAAACAGGTTCGAGTAAAAAATGA
mRNA sequenceShow/hide mRNA sequence
AAGACCGAGTCAACTCTGTCATCGCCAAGCTACCCAATTTCGCCACTTTCAATGGCGGACCCACGAGCATCACTGTCATCTCTATCTTCACCGCCGTCTTTGCCTCCCAA
TGATCAGCTACCCAGACGCTTCAAGGTCGTCTGGCGCGTTCTACTGATCTCCAATTTCGCCCTTTCAGCCTACATGTTTGCAAGTGCAAGGAAGAAGGACTTGGGGCAAA
TGGAGAATGATGAAGCAGAAAAAGATTTGGGTCAACTGGAAAATGATGGAATAGAAAAATGCAGTGATAGTGAAATAATGGAAATACCCTCAACGTTTATGGTGGATACC
ACTGGCATAGTTACAGAGAACATCTCGGAAGATCAGCACCAAAAACCATTCCACTGGATTGTCGATGGTTGGAGAGAAAAAACAGGTTCGAGTAAAAAATGAATTGGTAG
GTTAGAAGCTGATTCTTGAACGGCTCAATGTTCATCCTCTCCAAACTTACAGATTTGATTCACTGTTTAATGGCGATTTAAGAGATAATCTCTGCTCTCTAAAGTTTGTT
TCAATGTTTGTATTTCATATTTTGATTAATTGGGCTGTTGTTCATAAACTAGTTGTACCTCGTGTTTTGTGTTGTATTTGACGCAATATCTACTCCTCAAAAGTGTGAAT
AGATATGAAAATATTATTACTCAACTAA
Protein sequenceShow/hide protein sequence
MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTENISEDQHQKPF
HWIVDGWREKTGSSKK