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Carg21978 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21978
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING/U-box superfamily protein
Genome locationCarg_Chr04:141600..142414
RNA-Seq ExpressionCarg21978
SyntenyCarg21978
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599871.1 U-box domain-containing protein 62, partial [Cucurbita argyrosperma subsp. sororia]1.7e-4075.4Show/hide
Query:  ENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYR
        ENGDIAIDDGIHRGVQYPFAVNEKVLIK      GNRRTPEKFVGKEAVITSQCLNGW                         YLLKIIGTGENVRLQYR
Subjt:  ENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYR

Query:  SLRKILNTTPANEDSCPSQPLQHSSS
        SLRKILNTTPANEDSCPSQPLQHSSS
Subjt:  SLRKILNTTPANEDSCPSQPLQHSSS

KAG7030554.1 U-box domain-containing protein 62, partial [Cucurbita argyrosperma subsp. argyrosperma]5.9e-70100Show/hide
Query:  MPFSSVGSHTENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIG
        MPFSSVGSHTENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIG
Subjt:  MPFSSVGSHTENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIG

Query:  TGENVRLQYRSLRKILNTTPANEDSCPSQPLQHSSS
        TGENVRLQYRSLRKILNTTPANEDSCPSQPLQHSSS
Subjt:  TGENVRLQYRSLRKILNTTPANEDSCPSQPLQHSSS

XP_022942565.1 uncharacterized protein LOC111447566 [Cucurbita moschata]1.7e-4075.4Show/hide
Query:  ENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYR
        ENGDIAIDDGIHRGVQYPFAVNEKVLIK      GNRRTPEKFVGKEAVITSQCLNGW                         YLLKIIGTGENVRLQYR
Subjt:  ENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYR

Query:  SLRKILNTTPANEDSCPSQPLQHSSS
        SLRKILNTTPANEDSCPSQPLQHSSS
Subjt:  SLRKILNTTPANEDSCPSQPLQHSSS

XP_022990573.1 uncharacterized protein LOC111487410 [Cucurbita maxima]1.7e-4075.4Show/hide
Query:  ENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYR
        ENGDIAIDDGIHRGVQYPFAVNEKVLIK      GNRRTPEKFVGKEAVITSQCLNGW                         YLLKIIGTGENVRLQYR
Subjt:  ENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYR

Query:  SLRKILNTTPANEDSCPSQPLQHSSS
        SLRKILNTTPANEDSCPSQPLQHSSS
Subjt:  SLRKILNTTPANEDSCPSQPLQHSSS

XP_023511739.1 uncharacterized protein LOC111776223 [Cucurbita pepo subsp. pepo]1.7e-4075.4Show/hide
Query:  ENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYR
        ENGDIAIDDGIHRGVQYPFAVNEKVLIK      GNRRTPEKFVGKEAVITSQCLNGW                         YLLKIIGTGENVRLQYR
Subjt:  ENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYR

Query:  SLRKILNTTPANEDSCPSQPLQHSSS
        SLRKILNTTPANEDSCPSQPLQHSSS
Subjt:  SLRKILNTTPANEDSCPSQPLQHSSS

TrEMBL top hitse value%identityAlignment
A0A5A7SSH6 RING/U-box superfamily protein isoform 14.6e-3669.05Show/hide
Query:  ENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYR
        ENGD+AIDDGIHRGVQYPFA NEKVLIK      GNRRTPEKFVGKEAVITSQCLNGW                         YLLKIIGTGENVRLQYR
Subjt:  ENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYR

Query:  SLRKILNTTPANEDSCPSQPLQHSSS
        SLRKILNTTPAN++S P QPLQH+ S
Subjt:  SLRKILNTTPANEDSCPSQPLQHSSS

A0A5D3CRE0 RING/U-box superfamily protein isoform 14.6e-3669.05Show/hide
Query:  ENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYR
        ENGD+AIDDGIHRGVQYPFA NEKVLIK      GNRRTPEKFVGKEAVITSQCLNGW                         YLLKIIGTGENVRLQYR
Subjt:  ENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYR

Query:  SLRKILNTTPANEDSCPSQPLQHSSS
        SLRKILNTTPAN++S P QPLQH+ S
Subjt:  SLRKILNTTPANEDSCPSQPLQHSSS

A0A6J1DMB0 uncharacterized protein LOC1110223232.0e-3973.02Show/hide
Query:  ENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYR
        ENGDIAIDDGIHRGVQYPF VNEKVLIK      GNRRTPEKFVGKEAVITSQCLNGW                         YLLKIIGTGENVRLQYR
Subjt:  ENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYR

Query:  SLRKILNTTPANEDSCPSQPLQHSSS
        SLRKILN TPANED+CPSQPLQHSSS
Subjt:  SLRKILNTTPANEDSCPSQPLQHSSS

A0A6J1FWI9 uncharacterized protein LOC1114475668.1e-4175.4Show/hide
Query:  ENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYR
        ENGDIAIDDGIHRGVQYPFAVNEKVLIK      GNRRTPEKFVGKEAVITSQCLNGW                         YLLKIIGTGENVRLQYR
Subjt:  ENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYR

Query:  SLRKILNTTPANEDSCPSQPLQHSSS
        SLRKILNTTPANEDSCPSQPLQHSSS
Subjt:  SLRKILNTTPANEDSCPSQPLQHSSS

A0A6J1JTN9 uncharacterized protein LOC1114874108.1e-4175.4Show/hide
Query:  ENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYR
        ENGDIAIDDGIHRGVQYPFAVNEKVLIK      GNRRTPEKFVGKEAVITSQCLNGW                         YLLKIIGTGENVRLQYR
Subjt:  ENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYR

Query:  SLRKILNTTPANEDSCPSQPLQHSSS
        SLRKILNTTPANEDSCPSQPLQHSSS
Subjt:  SLRKILNTTPANEDSCPSQPLQHSSS

SwissProt top hitse value%identityAlignment
Q58FY4 U-box domain-containing protein 633.5e-0934.41Show/hide
Query:  RGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYRSLRKI
        RG+Q+PF++ + ++I+      GN+RTP +FVG+ AVI +QCLNGW                         Y++K +   E+++LQ+ SL KI
Subjt:  RGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYRSLRKI

Q6DBN5 U-box domain-containing protein 621.1e-1040.91Show/hide
Query:  YPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYRSLRK
        +PFAV ++V+IK      GN+RTP +FVG+EAV+T+QCLNGW                         Y++K +   E+V+LQYRSL K
Subjt:  YPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYRSLRK

Arabidopsis top hitse value%identityAlignment
AT2G40640.1 RING/U-box superfamily protein2.5e-1034.41Show/hide
Query:  RGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYRSLRKI
        RG+Q+PF++ + ++I+      GN+RTP +FVG+ AVI +QCLNGW                         Y++K +   E+++LQ+ SL KI
Subjt:  RGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYRSLRKI

AT2G40640.2 RING/U-box superfamily protein2.8e-0951.06Show/hide
Query:  RGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWL
        RG+Q+PF++ + ++I+      GN+RTP +FVG+ AVI +QCLNGWL
Subjt:  RGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWL

AT3G19895.1 RING/U-box superfamily protein3.2e-2652Show/hide
Query:  ENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYR
        ENGD A DDG+HR V YPFAVNEKVLIK      GNRRTPEKFVGKEA++TSQCLNGW                         YLLKI+ +G+NVRLQYR
Subjt:  ENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYR

Query:  SLRKILNTTPANEDSCPSQPLQHSS
        SL+K++N          +QP++ +S
Subjt:  SLRKILNTTPANEDSCPSQPLQHSS

AT5G05230.1 RING/U-box superfamily protein7.8e-1240.91Show/hide
Query:  YPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYRSLRK
        +PFAV ++V+IK      GN+RTP +FVG+EAV+T+QCLNGW                         Y++K +   E+V+LQYRSL K
Subjt:  YPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYRSLRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTTTTAGTAGTGTAGGCTCTCATACAGAAAACGGTGATATTGCCATCGATGATGGAATCCATCGAGGAGTTCAATATCCCTTTGCAGTAAATGAAAAGGTCCTAAT
AAAGAATTTGAGAAGCGTTCTGGGAAATAGGAGAACACCAGAAAAATTTGTTGGGAAAGAAGCAGTCATCACATCCCAGTGTCTGAATGGCTGGTTAGTACGCGTATTAC
AAAGTGATAGTTCATGTTCTTCTATAGGACTACATAGTTCGTTGTCTCATCAGACATTGTATTTACTAAAAATCATTGGGACTGGAGAAAATGTTCGGTTGCAATATCGG
TCTCTTAGGAAGATCCTGAACACGACACCAGCTAACGAGGATAGCTGTCCCTCACAGCCCCTTCAGCACAGCAGCTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTTTTAGTAGTGTAGGCTCTCATACAGAAAACGGTGATATTGCCATCGATGATGGAATCCATCGAGGAGTTCAATATCCCTTTGCAGTAAATGAAAAGGTCCTAAT
AAAGAATTTGAGAAGCGTTCTGGGAAATAGGAGAACACCAGAAAAATTTGTTGGGAAAGAAGCAGTCATCACATCCCAGTGTCTGAATGGCTGGTTAGTACGCGTATTAC
AAAGTGATAGTTCATGTTCTTCTATAGGACTACATAGTTCGTTGTCTCATCAGACATTGTATTTACTAAAAATCATTGGGACTGGAGAAAATGTTCGGTTGCAATATCGG
TCTCTTAGGAAGATCCTGAACACGACACCAGCTAACGAGGATAGCTGTCCCTCACAGCCCCTTCAGCACAGCAGCTCATAG
Protein sequenceShow/hide protein sequence
MPFSSVGSHTENGDIAIDDGIHRGVQYPFAVNEKVLIKNLRSVLGNRRTPEKFVGKEAVITSQCLNGWLVRVLQSDSSCSSIGLHSSLSHQTLYLLKIIGTGENVRLQYR
SLRKILNTTPANEDSCPSQPLQHSSS