; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg22022 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22022
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCarg_Chr04:402008..402760
RNA-Seq ExpressionCarg22022
SyntenyCarg22022
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599919.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]5.8e-140100Show/hide
Query:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG
        MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG
Subjt:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG

Query:  YCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSS
        YCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSS
Subjt:  YCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSS

Query:  LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG
        LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG
Subjt:  LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG

KAG7030598.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-144100Show/hide
Query:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG
        MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG
Subjt:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG

Query:  YCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSS
        YCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSS
Subjt:  YCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSS

Query:  LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQGGCWERV
        LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQGGCWERV
Subjt:  LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQGGCWERV

XP_022943027.1 pentatricopeptide repeat-containing protein At2g01740 [Cucurbita moschata]4.9e-13999.18Show/hide
Query:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG
        MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG
Subjt:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG

Query:  YCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSS
        YCASYKIRE CFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDM CKMGDMEVGNKMFFDMMKVGVVPNLVAFSS
Subjt:  YCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSS

Query:  LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG
        LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG
Subjt:  LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG

XP_022995400.1 pentatricopeptide repeat-containing protein At2g01740 [Cucurbita maxima]3.9e-13697.54Show/hide
Query:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG
        MVKEALQ LAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG
Subjt:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG

Query:  YCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSS
        YCASYKIREACFLVNR+R G+LNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDM CKMGDMEVGNKMFFDMMKVGVVPNLVAFSS
Subjt:  YCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSS

Query:  LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG
        LIDGYCKAGSL+VAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG
Subjt:  LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG

XP_023537260.1 pentatricopeptide repeat-containing protein At2g01740 [Cucurbita pepo subsp. pepo]1.9e-13597.13Show/hide
Query:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG
        MVKEALQ LAHLRRIS FPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPH+SSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG
Subjt:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG

Query:  YCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSS
        YCASYKIREACFLVNR+R GVLNPDLVMFNILFNGFAK YMKNEAFMYLGLMWKSCLPNVVTYGTLVDM CKMGDMEVGNKMFFDMMKVGVVPNLVAFSS
Subjt:  YCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSS

Query:  LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG
        LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG
Subjt:  LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG

TrEMBL top hitse value%identityAlignment
A0A1S3BTQ4 pentatricopeptide repeat-containing protein At2g01740 isoform X21.9e-11281.22Show/hide
Query:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG
        MVKEALQ LAHLRRISRFPSPFTCNKL+HSLINSGCG LSAK+L H LSKGYTPH SSFNSIISFFC+ GN+K+AE+I  SM RFGCSPDIVSYNSLL G
Subjt:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG

Query:  YCASYKIREACFLVNRLRRGVLN-PDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFS
        YC+S +I++ACFLVNR+R   LN PDLVMFNILF GFAKVYMKNEAFMYLGLMWK  LP++VTYGT VDM CKMGDME+GN+MF DMMKVG+VPNL+ FS
Subjt:  YCASYKIREACFLVNRLRRGVLN-PDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFS

Query:  SLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG
        SLIDGYCKAGSLDVAF Y ERM++CSV+PNEFTYSTLIDGC K+G
Subjt:  SLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG

A0A5A7UTD7 Pentatricopeptide repeat-containing protein1.9e-11281.22Show/hide
Query:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG
        MVKEALQ LAHLRRISRFPSPFTCNKL+HSLINSGCG LSAK+L H LSKGYTPH SSFNSIISFFC+ GN+K+AE+I  SM RFGCSPDIVSYNSLL G
Subjt:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG

Query:  YCASYKIREACFLVNRLRRGVLN-PDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFS
        YC+S +I++ACFLVNR+R   LN PDLVMFNILF GFAKVYMKNEAFMYLGLMWK  LP++VTYGT VDM CKMGDME+GN+MF DMMKVG+VPNL+ FS
Subjt:  YCASYKIREACFLVNRLRRGVLN-PDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFS

Query:  SLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG
        SLIDGYCKAGSLDVAF Y ERM++CSV+PNEFTYSTLIDGC K+G
Subjt:  SLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG

A0A6J1D0T3 pentatricopeptide repeat-containing protein At2g017403.9e-11881.97Show/hide
Query:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG
        MVK+ALQ LA+LRRISRFPSPFTCNKL+HSL+NSGCGELSAK+LFHFLSKGY+PH SSFNSIISFFC+LG +++A++IL+SMPRFGCSPDIVSYNSLL G
Subjt:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG

Query:  YCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSS
        +C +Y+IR+ACFLVNR+R   L+PDLVMFNILFNGFAKVYMK EAFMYLGLMWK CLPNVVTYGT +DM CKMGDME+GN MF DM+KVGVVPN VAFSS
Subjt:  YCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSS

Query:  LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG
        LIDGYCKAGSLD+AF Y E+M++CSVQPNEFTY+TLIDGCCKQG
Subjt:  LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG

A0A6J1FRV7 pentatricopeptide repeat-containing protein At2g017402.4e-13999.18Show/hide
Query:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG
        MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG
Subjt:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG

Query:  YCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSS
        YCASYKIRE CFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDM CKMGDMEVGNKMFFDMMKVGVVPNLVAFSS
Subjt:  YCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSS

Query:  LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG
        LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG
Subjt:  LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG

A0A6J1K3Y4 pentatricopeptide repeat-containing protein At2g017401.9e-13697.54Show/hide
Query:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG
        MVKEALQ LAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG
Subjt:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG

Query:  YCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSS
        YCASYKIREACFLVNR+R G+LNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDM CKMGDMEVGNKMFFDMMKVGVVPNLVAFSS
Subjt:  YCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSS

Query:  LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG
        LIDGYCKAGSL+VAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG
Subjt:  LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG

SwissProt top hitse value%identityAlignment
P0C894 Putative pentatricopeptide repeat-containing protein At2g021502.9e-3333.06Show/hide
Query:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG
        M++EA+QC + ++R   FP   +CN L+H     G  +   +     +  G  P   ++N +I   CK G+++ A  +   M   G  PD V+YNS++ G
Subjt:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG

Query:  YCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKV-YMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFS
        +    ++ +       ++     PD++ +N L N F K   +      Y  +      PNVV+Y TLVD  CK G M+   K + DM +VG+VPN   ++
Subjt:  YCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKV-YMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFS

Query:  SLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCC
        SLID  CK G+L  AF     M Q  V+ N  TY+ LIDG C
Subjt:  SLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCC

Q9FMD3 Pentatricopeptide repeat-containing protein At5g16640, mitochondrial3.0e-3032.5Show/hide
Query:  ALQCLAHLRRISRFPSPFTCNKLVHSLINSGC-GELSAKVLFHF---LSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG
        AL  L  + ++   PS  T      SL+N  C G+     L+ F   +  GY P+   +N+II   CK   +  A  +LN M + G  PD+V+YNSL+ G
Subjt:  ALQCLAHLRRISRFPSPFTCNKLVHSLINSGC-GELSAKVLFHF---LSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG

Query:  YCASYKIREACFLVN-----------------------------------RLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLM-WKSCLPNVVTYG
         C+S +  +A  +V+                                    + R  L+PD+V +++L  G       +EA    G M  K C P+VVTY 
Subjt:  YCASYKIREACFLVN-----------------------------------RLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLM-WKSCLPNVVTYG

Query:  TLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG
         L++  CK   +E G K+F +M + GVV N V ++ LI GYC+AG L+VA     RM  C V PN  TY+ L+ G C  G
Subjt:  TLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG

Q9LFF1 Pentatricopeptide repeat-containing protein At3g53700, chloroplastic3.5e-3133.19Show/hide
Query:  FPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRL
        FP  +T N LV+ L  +G  + + +++   L +GY P   ++NS+IS  CKLG +K A  +L+ M    CSP+ V+YN+L+   C   ++ EA  L   L
Subjt:  FPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRL

Query:  RRGVLNPDLVMFNILFNGFAKVYMKNEAF-MYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFG
            + PD+  FN L  G         A  ++  +  K C P+  TY  L+D +C  G ++    M   M   G   +++ +++LIDG+CKA     A  
Subjt:  RRGVLNPDLVMFNILFNGFAKVYMKNEAF-MYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFG

Query:  YLERMQQCSVQPNEFTYSTLIDGCCK
          + M+   V  N  TY+TLIDG CK
Subjt:  YLERMQQCSVQPNEFTYSTLIDGCCK

Q9LQ14 Pentatricopeptide repeat-containing protein At1g62930, chloroplastic1.3e-3029.1Show/hide
Query:  VKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGY
        V +AL     +      P+  T N L+  L N G    ++++L   + +   P+  +F+++I  F K G +  AE++ + M +    PDI +Y+SL++G+
Subjt:  VKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGY

Query:  CASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAF-MYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSS
        C   ++ EA  +   +      P++V +N L  GF K     E   ++  +  +  + N VTY TL+  + + GD ++  K+F  M+  GV P+++ +S 
Subjt:  CASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAF-MYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSS

Query:  LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG
        L+DG CK G L+ A    E +Q+  ++P+ +TY+ +I+G CK G
Subjt:  LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG

Q9ZUA2 Pentatricopeptide repeat-containing protein At2g017407.5e-7452.63Show/hide
Query:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG
        MV+EALQ L+ LR+ S  P PFTCNK +H LINS CG LS K L + +S+GYTPH SSFNS++SF CKLG +K+AE I++SMPRFGC PD++SYNSL+ G
Subjt:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG

Query:  YCASYKIREACFLVNRLRRG---VLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVA
        +C +  IR A  ++  LR     +  PD+V FN LFNGF+K+ M +E F+Y+G+M K C PNVVTY T +D  CK G++++  K F  M +  + PN+V 
Subjt:  YCASYKIREACFLVNRLRRG---VLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVA

Query:  FSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG
        F+ LIDGYCKAG L+VA    + M++  +  N  TY+ LIDG CK+G
Subjt:  FSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG

Arabidopsis top hitse value%identityAlignment
AT1G62930.1 Tetratricopeptide repeat (TPR)-like superfamily protein9.5e-3229.1Show/hide
Query:  VKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGY
        V +AL     +      P+  T N L+  L N G    ++++L   + +   P+  +F+++I  F K G +  AE++ + M +    PDI +Y+SL++G+
Subjt:  VKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGY

Query:  CASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAF-MYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSS
        C   ++ EA  +   +      P++V +N L  GF K     E   ++  +  +  + N VTY TL+  + + GD ++  K+F  M+  GV P+++ +S 
Subjt:  CASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAF-MYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSS

Query:  LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG
        L+DG CK G L+ A    E +Q+  ++P+ +TY+ +I+G CK G
Subjt:  LIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG

AT2G01740.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.3e-7552.63Show/hide
Query:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG
        MV+EALQ L+ LR+ S  P PFTCNK +H LINS CG LS K L + +S+GYTPH SSFNS++SF CKLG +K+AE I++SMPRFGC PD++SYNSL+ G
Subjt:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG

Query:  YCASYKIREACFLVNRLRRG---VLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVA
        +C +  IR A  ++  LR     +  PD+V FN LFNGF+K+ M +E F+Y+G+M K C PNVVTY T +D  CK G++++  K F  M +  + PN+V 
Subjt:  YCASYKIREACFLVNRLRRG---VLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVA

Query:  FSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG
        F+ LIDGYCKAG L+VA    + M++  +  N  TY+ LIDG CK+G
Subjt:  FSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG

AT2G02150.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.0e-3433.06Show/hide
Query:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG
        M++EA+QC + ++R   FP   +CN L+H     G  +   +     +  G  P   ++N +I   CK G+++ A  +   M   G  PD V+YNS++ G
Subjt:  MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG

Query:  YCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKV-YMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFS
        +    ++ +       ++     PD++ +N L N F K   +      Y  +      PNVV+Y TLVD  CK G M+   K + DM +VG+VPN   ++
Subjt:  YCASYKIREACFLVNRLRRGVLNPDLVMFNILFNGFAKV-YMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFS

Query:  SLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCC
        SLID  CK G+L  AF     M Q  V+ N  TY+ LIDG C
Subjt:  SLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCC

AT3G53700.1 Pentatricopeptide repeat (PPR) superfamily protein2.5e-3233.19Show/hide
Query:  FPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRL
        FP  +T N LV+ L  +G  + + +++   L +GY P   ++NS+IS  CKLG +K A  +L+ M    CSP+ V+YN+L+   C   ++ EA  L   L
Subjt:  FPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREACFLVNRL

Query:  RRGVLNPDLVMFNILFNGFAKVYMKNEAF-MYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFG
            + PD+  FN L  G         A  ++  +  K C P+  TY  L+D +C  G ++    M   M   G   +++ +++LIDG+CKA     A  
Subjt:  RRGVLNPDLVMFNILFNGFAKVYMKNEAF-MYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFG

Query:  YLERMQQCSVQPNEFTYSTLIDGCCK
          + M+   V  N  TY+TLIDG CK
Subjt:  YLERMQQCSVQPNEFTYSTLIDGCCK

AT5G16640.1 Pentatricopeptide repeat (PPR) superfamily protein2.1e-3132.5Show/hide
Query:  ALQCLAHLRRISRFPSPFTCNKLVHSLINSGC-GELSAKVLFHF---LSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG
        AL  L  + ++   PS  T      SL+N  C G+     L+ F   +  GY P+   +N+II   CK   +  A  +LN M + G  PD+V+YNSL+ G
Subjt:  ALQCLAHLRRISRFPSPFTCNKLVHSLINSGC-GELSAKVLFHF---LSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHG

Query:  YCASYKIREACFLVN-----------------------------------RLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLM-WKSCLPNVVTYG
         C+S +  +A  +V+                                    + R  L+PD+V +++L  G       +EA    G M  K C P+VVTY 
Subjt:  YCASYKIREACFLVN-----------------------------------RLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLM-WKSCLPNVVTYG

Query:  TLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG
         L++  CK   +E G K+F +M + GVV N V ++ LI GYC+AG L+VA     RM  C V PN  TY+ L+ G C  G
Subjt:  TLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLERMQQCSVQPNEFTYSTLIDGCCKQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCAAAGAAGCCCTCCAATGCTTGGCTCACCTGCGACGAATCTCCCGCTTTCCCTCCCCTTTCACCTGCAATAAGCTTGTTCACTCTCTCATCAACTCCGGCTGCGG
CGAGCTCTCCGCCAAAGTGCTTTTCCACTTTCTCTCCAAAGGGTACACTCCTCATTCATCGTCTTTCAATTCCATCATCTCCTTTTTCTGTAAATTAGGAAACATAAAAT
ATGCCGAACGGATTTTGAATTCAATGCCCAGATTTGGGTGCTCGCCTGATATTGTGTCATACAATTCTTTGTTACATGGGTATTGTGCGAGTTATAAGATTAGAGAGGCT
TGTTTTCTTGTTAATAGACTTCGTCGGGGTGTGTTGAATCCTGATTTGGTTATGTTTAATATACTGTTTAATGGGTTTGCTAAGGTTTATATGAAGAATGAGGCGTTTAT
GTATCTGGGTTTGATGTGGAAATCCTGTTTGCCTAATGTTGTTACTTATGGTACACTTGTTGATATGATCTGTAAGATGGGGGATATGGAAGTGGGTAACAAAATGTTTT
TTGATATGATGAAGGTGGGCGTTGTGCCTAATTTGGTTGCTTTTAGCTCCTTGATTGATGGGTATTGCAAGGCTGGGAGTTTGGATGTTGCATTTGGATACTTAGAGAGA
ATGCAACAATGTTCGGTTCAGCCGAACGAGTTCACATATTCAACGTTGATTGATGGTTGTTGCAAGCAGGGCGGATGTTGGGAAAGAGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCAAAGAAGCCCTCCAATGCTTGGCTCACCTGCGACGAATCTCCCGCTTTCCCTCCCCTTTCACCTGCAATAAGCTTGTTCACTCTCTCATCAACTCCGGCTGCGG
CGAGCTCTCCGCCAAAGTGCTTTTCCACTTTCTCTCCAAAGGGTACACTCCTCATTCATCGTCTTTCAATTCCATCATCTCCTTTTTCTGTAAATTAGGAAACATAAAAT
ATGCCGAACGGATTTTGAATTCAATGCCCAGATTTGGGTGCTCGCCTGATATTGTGTCATACAATTCTTTGTTACATGGGTATTGTGCGAGTTATAAGATTAGAGAGGCT
TGTTTTCTTGTTAATAGACTTCGTCGGGGTGTGTTGAATCCTGATTTGGTTATGTTTAATATACTGTTTAATGGGTTTGCTAAGGTTTATATGAAGAATGAGGCGTTTAT
GTATCTGGGTTTGATGTGGAAATCCTGTTTGCCTAATGTTGTTACTTATGGTACACTTGTTGATATGATCTGTAAGATGGGGGATATGGAAGTGGGTAACAAAATGTTTT
TTGATATGATGAAGGTGGGCGTTGTGCCTAATTTGGTTGCTTTTAGCTCCTTGATTGATGGGTATTGCAAGGCTGGGAGTTTGGATGTTGCATTTGGATACTTAGAGAGA
ATGCAACAATGTTCGGTTCAGCCGAACGAGTTCACATATTCAACGTTGATTGATGGTTGTTGCAAGCAGGGCGGATGTTGGGAAAGAGTCTGA
Protein sequenceShow/hide protein sequence
MVKEALQCLAHLRRISRFPSPFTCNKLVHSLINSGCGELSAKVLFHFLSKGYTPHSSSFNSIISFFCKLGNIKYAERILNSMPRFGCSPDIVSYNSLLHGYCASYKIREA
CFLVNRLRRGVLNPDLVMFNILFNGFAKVYMKNEAFMYLGLMWKSCLPNVVTYGTLVDMICKMGDMEVGNKMFFDMMKVGVVPNLVAFSSLIDGYCKAGSLDVAFGYLER
MQQCSVQPNEFTYSTLIDGCCKQGGCWERV