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Carg22042 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22042
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptioncytochrome b6f complex subunit (petM), putative
Genome locationCarg_Chr19:6447354..6447734
RNA-Seq ExpressionCarg22042
SyntenyCarg22042
Gene Ontology termsGO:0009512 - cytochrome b6f complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR012595 - PetM of cytochrome b6/f complex subunit 7


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572003.1 Cytochrome b6-f complex subunit 7, partial [Cucurbita argyrosperma subsp. sororia]2.8e-58100Show/hide
Query:  MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
        MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
Subjt:  MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI

Query:  INGLVLVGVAVGFVLLRIEASVEEAE
        INGLVLVGVAVGFVLLRIEASVEEAE
Subjt:  INGLVLVGVAVGFVLLRIEASVEEAE

XP_022952989.1 uncharacterized protein LOC111455503 [Cucurbita moschata]1.1e-5799.21Show/hide
Query:  MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
        MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFA+IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
Subjt:  MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI

Query:  INGLVLVGVAVGFVLLRIEASVEEAE
        INGLVLVGVAVGFVLLRIEASVEEAE
Subjt:  INGLVLVGVAVGFVLLRIEASVEEAE

XP_022972366.1 uncharacterized protein LOC111470941 [Cucurbita maxima]3.8e-5596.83Show/hide
Query:  MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
        MAAT SATLSP ISTAAPIAAGSRRQRNTNVHYITGLNSF GLKAHNNI SLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
Subjt:  MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI

Query:  INGLVLVGVAVGFVLLRIEASVEEAE
        INGLVLVGVAVGFVLLRIEASVEEAE
Subjt:  INGLVLVGVAVGFVLLRIEASVEEAE

XP_023554105.1 uncharacterized protein LOC111811473 [Cucurbita pepo subsp. pepo]1.7e-5596.83Show/hide
Query:  MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
        MAAT SATLSPPISTAAPIAAGSRRQRN NVHYITGLNSF GLKAHNNI SLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
Subjt:  MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI

Query:  INGLVLVGVAVGFVLLRIEASVEEAE
        INGLVLVGVAVGFVLLRIEASVEEAE
Subjt:  INGLVLVGVAVGFVLLRIEASVEEAE

XP_038887487.1 uncharacterized protein LOC120077620 [Benincasa hispida]3.0e-5291.94Show/hide
Query:  ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIIN
        AT SATLSP + TAAPIAAGSRRQR TNVHYITGLNSF GLKAHNN+ SLGLPVCADQSFANI+SSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIIN
Subjt:  ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIIN

Query:  GLVLVGVAVGFVLLRIEASVEEAE
        GLVL+GVAVGFVLLRIEASVEEAE
Subjt:  GLVLVGVAVGFVLLRIEASVEEAE

TrEMBL top hitse value%identityAlignment
A0A0A0K4W4 Uncharacterized protein4.0e-5088.71Show/hide
Query:  ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIIN
        AT SATLS  +S+AAPI+AGSRRQR TN H+I+GLNSFSGLKAHNN+ SLGLPVCADQSFA IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIIN
Subjt:  ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIIN

Query:  GLVLVGVAVGFVLLRIEASVEEAE
        GLVL+GVAVGFVLLRIEASVEEAE
Subjt:  GLVLVGVAVGFVLLRIEASVEEAE

A0A1S3C0U4 uncharacterized protein LOC1034952017.2e-5291.94Show/hide
Query:  ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIIN
        AT SATLS  +STAAPIAAGSRRQR TNVHYITGLNSF GLKAHNN+ SLGLPVCADQSFA IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIIN
Subjt:  ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIIN

Query:  GLVLVGVAVGFVLLRIEASVEEAE
        GLVL+GVAVGFVLLRIEASVEEAE
Subjt:  GLVLVGVAVGFVLLRIEASVEEAE

A0A6J1C3G5 uncharacterized protein LOC1110080071.2e-4686.61Show/hide
Query:  ATPSATLSPPISTAAPIAAGSRR-QRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFANIVSSLKYPSKGKGKN--GGGALSSTCNAAGEIFRIAA
        AT SATLSP +STAAPIAAGSRR QR+ NVHYITGLNSF GLKAHNN+ SLGLP+C D SFA IVSSLKYPSKGKGKN  GGGALSSTCNAAGEIFRIAA
Subjt:  ATPSATLSPPISTAAPIAAGSRR-QRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFANIVSSLKYPSKGKGKN--GGGALSSTCNAAGEIFRIAA

Query:  IINGLVLVGVAVGFVLLRIEASVEEAE
        IINGLVLVGVAVGFVLLRIEA VEE E
Subjt:  IINGLVLVGVAVGFVLLRIEASVEEAE

A0A6J1GND2 uncharacterized protein LOC1114555035.1e-5899.21Show/hide
Query:  MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
        MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFA+IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
Subjt:  MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI

Query:  INGLVLVGVAVGFVLLRIEASVEEAE
        INGLVLVGVAVGFVLLRIEASVEEAE
Subjt:  INGLVLVGVAVGFVLLRIEASVEEAE

A0A6J1I5T0 uncharacterized protein LOC1114709411.8e-5596.83Show/hide
Query:  MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
        MAAT SATLSP ISTAAPIAAGSRRQRNTNVHYITGLNSF GLKAHNNI SLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
Subjt:  MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI

Query:  INGLVLVGVAVGFVLLRIEASVEEAE
        INGLVLVGVAVGFVLLRIEASVEEAE
Subjt:  INGLVLVGVAVGFVLLRIEASVEEAE

SwissProt top hitse value%identityAlignment
P80883 Cytochrome b6-f complex subunit 7 (Fragment)8.0e-0883.33Show/hide
Query:  NAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEE
        NAA EIFRIAA++NGL LVGVA+GFVLLRIEA+VEE
Subjt:  NAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEE

Arabidopsis top hitse value%identityAlignment
AT2G26500.1 cytochrome b6f complex subunit (petM), putative6.7e-2657.48Show/hide
Query:  AATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNN-ITSLGLPVCADQSFANIVSSLKYPSKGKGKNG-GGALSSTCNAAGEIFRIAA
        AA P A +S   S     +  ++++    V YITGLNS+ GLKA NN + S+G P+C +Q FAN+V SL      KG+ G GGALS+TCNA GEIF+IAA
Subjt:  AATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNN-ITSLGLPVCADQSFANIVSSLKYPSKGKGKNG-GGALSSTCNAAGEIFRIAA

Query:  IINGLVLVGVAVGFVLLRIEASVEEAE
        I+N L LVGVAVGFVLLRIE SVEEAE
Subjt:  IINGLVLVGVAVGFVLLRIEASVEEAE

AT2G26500.2 cytochrome b6f complex subunit (petM), putative6.7e-2657.48Show/hide
Query:  AATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNN-ITSLGLPVCADQSFANIVSSLKYPSKGKGKNG-GGALSSTCNAAGEIFRIAA
        AA P A +S   S     +  ++++    V YITGLNS+ GLKA NN + S+G P+C +Q FAN+V SL      KG+ G GGALS+TCNA GEIF+IAA
Subjt:  AATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNN-ITSLGLPVCADQSFANIVSSLKYPSKGKGKNG-GGALSSTCNAAGEIFRIAA

Query:  IINGLVLVGVAVGFVLLRIEASVEEAE
        I+N L LVGVAVGFVLLRIE SVEEAE
Subjt:  IINGLVLVGVAVGFVLLRIEASVEEAE

AT2G26500.3 cytochrome b6f complex subunit (petM), putative2.6e-0938.1Show/hide
Query:  AATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNN-ITSLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
        AA P A +S   S     +  ++++    V YITGLNS+ GLKA NN + S+G P+C +Q FAN+V SLK                              
Subjt:  AATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNN-ITSLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI

Query:  INGLVLVGVAVGFVLLRIEASVEEAE
               G  VGFVLLRIE SVEEAE
Subjt:  INGLVLVGVAVGFVLLRIEASVEEAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCTACACCCTCCGCTACCCTCTCGCCGCCCATATCCACCGCCGCCCCCATCGCCGCCGGCTCTAGGCGGCAGAGGAACACCAATGTCCATTACATCACTGGCCT
CAACTCCTTTAGTGGCTTGAAAGCTCACAACAATATCACCTCCTTGGGCCTTCCCGTTTGTGCCGATCAGTCATTTGCTAACATTGTGAGCTCTTTGAAATACCCATCAA
AGGGTAAAGGCAAAAACGGCGGTGGGGCTCTCTCTTCTACCTGTAATGCCGCCGGTGAGATTTTCAGGATCGCCGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCG
GTGGGGTTTGTTCTTCTCAGGATTGAGGCATCTGTGGAGGAGGCTGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCTACACCCTCCGCTACCCTCTCGCCGCCCATATCCACCGCCGCCCCCATCGCCGCCGGCTCTAGGCGGCAGAGGAACACCAATGTCCATTACATCACTGGCCT
CAACTCCTTTAGTGGCTTGAAAGCTCACAACAATATCACCTCCTTGGGCCTTCCCGTTTGTGCCGATCAGTCATTTGCTAACATTGTGAGCTCTTTGAAATACCCATCAA
AGGGTAAAGGCAAAAACGGCGGTGGGGCTCTCTCTTCTACCTGTAATGCCGCCGGTGAGATTTTCAGGATCGCCGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCG
GTGGGGTTTGTTCTTCTCAGGATTGAGGCATCTGTGGAGGAGGCTGAGTGA
Protein sequenceShow/hide protein sequence
MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVA
VGFVLLRIEASVEEAE