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Carg22090 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22090
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
Genome locationCarg_Chr18:11329845..11330548
RNA-Seq ExpressionCarg22090
SyntenyCarg22090
Gene Ontology termsGO:0009409 - response to cold (biological process)
GO:0042752 - regulation of circadian rhythm (biological process)
InterPro domainsIPR044678 - Cold-regulated protein 27/28


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013222.1 hypothetical protein SDJN02_25980 [Cucurbita argyrosperma subsp. argyrosperma]1.1e-59100Show/hide
Query:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
        MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
Subjt:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV

Query:  SQNSISNIAFLLSFFFLFQY
        SQNSISNIAFLLSFFFLFQY
Subjt:  SQNSISNIAFLLSFFFLFQY
XP_022945615.1 uncharacterized protein LOC111449801 [Cucurbita moschata]3.0e-49100Show/hide
Query:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
        MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
Subjt:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
XP_022968364.1 uncharacterized protein LOC111467625 [Cucurbita maxima]6.6e-4999Show/hide
Query:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
        MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGR+DGRSSRRSRRISSLPPISIQDQV
Subjt:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
XP_022984701.1 uncharacterized protein LOC111482903 isoform X2 [Cucurbita maxima]1.4e-3076Show/hide
Query:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
        M SHVQFS+T PFWT+EKH+HFLNSMEASFVRSM++N +HRRRLRL+R L DTADSTLDS QK RK H  +  G RMDGRSSRRSRRI SLP  SIQDQV
Subjt:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
XP_023542542.1 uncharacterized protein LOC111802424 [Cucurbita pepo subsp. pepo]3.0e-49100Show/hide
Query:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
        MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
Subjt:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
TrEMBL top hitse value%identityAlignment
A0A1S3AYV4 uncharacterized protein LOC1034840631.9e-3073Show/hide
Query:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
        M SHVQF++TGP WT+EKH+HFLNSMEASFVRSM++N  HRRRLRL+RLLPDTADSTLDS   + KN HPT+G  RM+GRS+RRSRR SS P  S QDQV
Subjt:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
A0A6J1G1G2 uncharacterized protein LOC1114498011.4e-49100Show/hide
Query:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
        MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
Subjt:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
A0A6J1HZF8 uncharacterized protein LOC1114676253.2e-4999Show/hide
Query:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
        MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGR+DGRSSRRSRRISSLPPISIQDQV
Subjt:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
A0A6J1J606 uncharacterized protein LOC111482903 isoform X26.7e-3176Show/hide
Query:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
        M SHVQFS+T PFWT+EKH+HFLNSMEASFVRSM++N +HRRRLRL+R L DTADSTLDS QK RK H  +  G RMDGRSSRRSRRI SLP  SIQDQV
Subjt:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
A0A6J1JBA6 uncharacterized protein LOC111482903 isoform X11.1e-3076Show/hide
Query:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
        M SHVQFS+T PFWT+EKH+HFLNSMEASFVRSM++N +HRRRLRL+R L DTADSTLDS QK RK H  +  G RMDGRSSRRSRRI SLP  SIQDQV
Subjt:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGCACGTGCAATTCAGCAAAACGGGGCCGTTTTGGACCGATGAAAAGCACGTGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTCCGATCCATGTACGAAAA
TCTGCACCATCGCCGCCGTCTACGGTTGAACCGCCTCCTCCCGGACACTGCTGACTCAACCCTAGATTCGCATCAGAAGTACAGGAAAAACCACCATCCTACCGCCGGAG
GTGGCAGAATGGACGGTAGATCTAGCAGGAGATCGAGGAGGATATCATCTCTACCGCCCATTTCAATTCAAGATCAGGTTAGTCAGAACTCCATATCAAACATTGCATTT
CTTCTTTCTTTCTTTTTTCTCTTCCAATATTAG
mRNA sequenceShow/hide mRNA sequence
TTCTTCTTCTTCTTCGTCTTCTTCTCTGTGTTTTCTTTCCTCATAAACCCTAGCCATGGCGTCGCACGTGCAATTCAGCAAAACGGGGCCGTTTTGGACCGATGAAAAGC
ACGTGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTCCGATCCATGTACGAAAATCTGCACCATCGCCGCCGTCTACGGTTGAACCGCCTCCTCCCGGACACTGCTGAC
TCAACCCTAGATTCGCATCAGAAGTACAGGAAAAACCACCATCCTACCGCCGGAGGTGGCAGAATGGACGGTAGATCTAGCAGGAGATCGAGGAGGATATCATCTCTACC
GCCCATTTCAATTCAAGATCAGGTTAGTCAGAACTCCATATCAAACATTGCATTTCTTCTTTCTTTCTTTTTTCTCTTCCAATATTAGAAATTGTATATTAAATATATCC
ACACCATTTTTTGTTTTTTTTT
Protein sequenceShow/hide protein sequence
MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQVSQNSISNIAF
LLSFFFLFQY