CuGenDBv2

Gene ID	Carg22108
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	SLH domain-containing protein
Genome location	Carg_Chr18:11385866..11386657
RNA-Seq Expression	Carg22108
Synteny	Carg22108
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6574185.1 60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia]

2.2e-67

98.5

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Query:  MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW
        MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW
Subjt:  MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW

Query:  LAGLVGIGITGFILVSGITFAAWSINKQNCSSE
        LAGLVGIGITGFILVSGITFAAWSINKQNCS +
Subjt:  LAGLVGIGITGFILVSGITFAAWSINKQNCSSE

KAG7013240.1 hypothetical protein SDJN02_25998 [Cucurbita argyrosperma subsp. argyrosperma]

6.5e-75

100

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Query:  MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW
        MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW
Subjt:  MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW

Query:  LAGLVGIGITGFILVSGITFAAWSINKQNCSSELFSSRMLFFFVSF
        LAGLVGIGITGFILVSGITFAAWSINKQNCSSELFSSRMLFFFVSF
Subjt:  LAGLVGIGITGFILVSGITFAAWSINKQNCSSELFSSRMLFFFVSF

XP_022945850.1 uncharacterized protein LOC111449970 isoform X1 [Cucurbita moschata]

5.5e-66

96.99

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Query:  MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW
        MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRL+VI RPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW
Subjt:  MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW

Query:  LAGLVGIGITGFILVSGITFAAWSINKQNCSSE
        LAGLVGIGITGFILVSGITFAAWSINKQNCS +
Subjt:  LAGLVGIGITGFILVSGITFAAWSINKQNCSSE

XP_022968011.1 uncharacterized protein LOC111467385 isoform X1 [Cucurbita maxima]

1.7e-62

93.23

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Query:  MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW
        MASTPSTCSPNSLQLRLALNCKN  KFP +PVRATVRKLDPRLRVI RPIVHNSAKIARTNGLRR+GICFAGSDSKADGFSGWSESDSGEEDLNLR KNW
Subjt:  MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW

Query:  LAGLVGIGITGFILVSGITFAAWSINKQNCSSE
        LAGLVGIGITGFILVSGITFAAWSINKQNCS +
Subjt:  LAGLVGIGITGFILVSGITFAAWSINKQNCSSE

XP_023541683.1 uncharacterized protein LOC111801768 isoform X1 [Cucurbita pepo subsp. pepo]

1.0e-64

96.24

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Query:  MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW
        MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVI RPIVHNSAKIARTNGLRRN ICFAGSDSKADGFSGWSESDSGEEDLNLR KNW
Subjt:  MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW

Query:  LAGLVGIGITGFILVSGITFAAWSINKQNCSSE
        LAGLVGIGITGFILVSGITFAAWSINKQNCS +
Subjt:  LAGLVGIGITGFILVSGITFAAWSINKQNCSSE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3AXY7 uncharacterized protein LOC103484091 isoform X3

2.4e-46

74.44

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Query:  MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW
        MAST  TCSP+SLQLRLALNC N  KFP + VRA VRKLDPRLR++ +PIVHN AK  R NGLR  G+CFAGS+S ADGFSGWSESDS  E L+LR K W
Subjt:  MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW

Query:  LAGLVGIGITGFILVSGITFAAWSINKQNCSSE
          GLVGIGITGFILVSGITFAAWSINKQN S +
Subjt:  LAGLVGIGITGFILVSGITFAAWSINKQNCSSE

A0A5A7SWX6 Putative oxidoreductase/transition metal ion-binding protein

2.4e-46

74.44

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Query:  MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW
        MAST  TCSP+SLQLRLALNC N  KFP + VRA VRKLDPRLR++ +PIVHN AK  R NGLR  G+CFAGS+S ADGFSGWSESDS  E L+LR K W
Subjt:  MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW

Query:  LAGLVGIGITGFILVSGITFAAWSINKQNCSSE
          GLVGIGITGFILVSGITFAAWSINKQN S +
Subjt:  LAGLVGIGITGFILVSGITFAAWSINKQNCSSE

A0A6J1G255 uncharacterized protein LOC111449970 isoform X1

2.7e-66

96.99

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Query:  MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW
        MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRL+VI RPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW
Subjt:  MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW

Query:  LAGLVGIGITGFILVSGITFAAWSINKQNCSSE
        LAGLVGIGITGFILVSGITFAAWSINKQNCS +
Subjt:  LAGLVGIGITGFILVSGITFAAWSINKQNCSSE

A0A6J1HSB9 uncharacterized protein LOC111467385 isoform X2

8.0e-63

93.23

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Query:  MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW
        MASTPSTCSPNSLQLRLALNCKN  KFP +PVRATVRKLDPRLRVI RPIVHNSAKIARTNGLRR+GICFAGSDSKADGFSGWSESDSGEEDLNLR KNW
Subjt:  MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW

Query:  LAGLVGIGITGFILVSGITFAAWSINKQNCSSE
        LAGLVGIGITGFILVSGITFAAWSINKQNCS +
Subjt:  LAGLVGIGITGFILVSGITFAAWSINKQNCSSE

A0A6J1HTP0 uncharacterized protein LOC111467385 isoform X1

8.0e-63

93.23

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Query:  MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW
        MASTPSTCSPNSLQLRLALNCKN  KFP +PVRATVRKLDPRLRVI RPIVHNSAKIARTNGLRR+GICFAGSDSKADGFSGWSESDSGEEDLNLR KNW
Subjt:  MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW

Query:  LAGLVGIGITGFILVSGITFAAWSINKQNCSSE
        LAGLVGIGITGFILVSGITFAAWSINKQNCS +
Subjt:  LAGLVGIGITGFILVSGITFAAWSINKQNCSSE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G23890.1 LOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope

2.5e-08

31.97

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Query:  MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGL-------RRNGICFAGSD---SKADGFSGWSESDSGE
        MAS  +T +P SLQLRLAL+             + VR+  P   V  RP     +++AR +G        +     + GSD   S AD  +GW +SD+ +
Subjt:  MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGL-------RRNGICFAGSD---SKADGFSGWSESDSGE

Query:  -EDLNLRTKNWLAGLVGIGITGFILVSGITFAAWSINKQNCSSELFS
         +   ++ K+ + G+VG G+ G IL  G+++AA S +K+    E+ S
Subjt:  -EDLNLRTKNWLAGLVGIGITGFILVSGITFAAWSINKQNCSSELFS

AT5G52410.2 INVOLVED IN: biological_process unknown

1.7e-09

37.98

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Query:  MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW
        MAST +T +P+SLQLR+ALN          P RA + KL  RLR+     V  +A+  R +G   NG         +D F GW  +DSG+++ N R  +W
Subjt:  MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNW

Query:  LAGLVGIGITGFILVSGITFAAWSINKQN
          G +  G+ G +L  G+T+AA S +K+N
Subjt:  LAGLVGIGITGFILVSGITFAAWSINKQN

Sequences

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CDS sequence

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ATGGCTTCCACTCCTTCCACATGTTCGCCCAACTCTCTCCAGCTTCGTCTCGCTCTCAATTGCAAGAATTCCCCCAAATTCCCTTTCCTTCCTGTTCGCGCCACAGTGCG
GAAGTTGGATCCTCGCCTCCGGGTGATTTTCCGCCCTATTGTTCATAATAGCGCGAAAATCGCGCGAACAAATGGACTGCGTCGGAATGGAATTTGTTTTGCTGGATCGG
ATTCCAAGGCTGATGGATTCTCCGGGTGGTCGGAATCGGATTCCGGCGAGGAGGATTTGAACTTGCGGACAAAGAATTGGTTGGCAGGGTTGGTGGGGATTGGAATTACT
GGATTCATCCTTGTCTCTGGAATCACCTTTGCAGCATGGTCGATAAACAAGCAGAATTGTTCCAGTGAGTTGTTTTCTTCAAGAATGCTTTTCTTTTTTGTTTCTTTTTG
A

mRNA sequence

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CTTCTTGGTTCGGATAGAGAGATAAGTAAAAAAGACTCCCTTTTCTTCCGCCCCTTTATCCACCAAAATCCCTACGCCTTTTTCTCATTCAATTCCTTCTTTTTTTACAA
ATTCAAGCTTGAATTTTCTTCCTCAATCCAATCTTCCCCAATTTACAGTAAATTACTCAATCTCCGTTTGGAGTAGGCTTTTTCATGGCTTCCACTCCTTCCACATGTTC
GCCCAACTCTCTCCAGCTTCGTCTCGCTCTCAATTGCAAGAATTCCCCCAAATTCCCTTTCCTTCCTGTTCGCGCCACAGTGCGGAAGTTGGATCCTCGCCTCCGGGTGA
TTTTCCGCCCTATTGTTCATAATAGCGCGAAAATCGCGCGAACAAATGGACTGCGTCGGAATGGAATTTGTTTTGCTGGATCGGATTCCAAGGCTGATGGATTCTCCGGG
TGGTCGGAATCGGATTCCGGCGAGGAGGATTTGAACTTGCGGACAAAGAATTGGTTGGCAGGGTTGGTGGGGATTGGAATTACTGGATTCATCCTTGTCTCTGGAATCAC
CTTTGCAGCATGGTCGATAAACAAGCAGAATTGTTCCAGTGAGTTGTTTTCTTCAAGAATGCTTTTCTTTTTTGTTTCTTTTTGA

Protein sequence

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MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNWLAGLVGIGIT
GFILVSGITFAAWSINKQNCSSELFSSRMLFFFVSF

Carg22108 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome