CuGenDBv2

Gene ID	Carg22131
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Pentatricopeptide repeat-containing protein
Genome location	Carg_Chr18:11488009..11488530
RNA-Seq Expression	Carg22131
Synteny	Carg22131
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008439275.1 PREDICTED: uncharacterized protein LOC103484107 [Cucumis melo]

1.8e-68

80.35

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Query:  MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK
        MA R+L +R+AAN FRT NKS ++YATAT  RMKSYAP ADFS FDH     QSKPKASRAGDFVPVYVAIG+IALSV LGLHTAKQQLA+SPSVSVRKK
Subjt:  MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK

Query:  RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN
        RRETIPEV EPEHVAEETEKFFAKSFFRKVAHVQE+EK  +Y+VPYDP LGDAYAH HRTE+L+SVG+DPA N
Subjt:  RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN

XP_022945500.1 uncharacterized protein LOC111449717 [Cucurbita moschata]

2.7e-88

100

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Query:  MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK
        MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK
Subjt:  MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK

Query:  RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN
        RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN
Subjt:  RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN

XP_022968331.1 uncharacterized protein LOC111467595 [Cucurbita maxima]

2.8e-85

97.11

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Query:  MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK
        MAFR+LA R+AANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDH+YQQQQSK KASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK
Subjt:  MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK

Query:  RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN
        RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN
Subjt:  RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN

XP_023542210.1 uncharacterized protein LOC111802176 [Cucurbita pepo subsp. pepo]

5.1e-87

98.84

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Query:  MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK
        MAFR+LATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFD NYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK
Subjt:  MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK

Query:  RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN
        RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN
Subjt:  RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN

XP_038877441.1 uncharacterized protein LOC120069725 [Benincasa hispida]

1.7e-74

84.39

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Query:  MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK
        MA R+L TR AAN FRT NKSP++Y TAT   MKSYAPAADFSRFDH+++QQQSKPKASRAGDFVPVYVAIG+IALSV LGLHTAKQQLAHSPSVSVRKK
Subjt:  MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK

Query:  RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN
        RRETIPEV EPEHVAEETEKFFAKSFFRKVAHVQE+EK  +Y+VPYDP LGDAYAH HRTETL+SVG+DPASN
Subjt:  RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L610 Uncharacterized protein

1.9e-66

78.03

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Query:  MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK
        MA R+L +R+AAN F+T   S ++YATAT  RMKSYAP ADFS F H     QSKPKASRAGDFVPVYVAIG+IALSV LGLHTAKQQLAHSPSVSVRKK
Subjt:  MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK

Query:  RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN
        RRETIPEV EPEHVAEETEKFFAKSFFRKVAH+QE+EK  +Y+VPYDP LGDAYAH HRTE+L+SVG+DPA N
Subjt:  RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN

A0A1S3AZ27 uncharacterized protein LOC103484107

8.9e-69

80.35

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Query:  MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK
        MA R+L +R+AAN FRT NKS ++YATAT  RMKSYAP ADFS FDH     QSKPKASRAGDFVPVYVAIG+IALSV LGLHTAKQQLA+SPSVSVRKK
Subjt:  MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK

Query:  RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN
        RRETIPEV EPEHVAEETEKFFAKSFFRKVAHVQE+EK  +Y+VPYDP LGDAYAH HRTE+L+SVG+DPA N
Subjt:  RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN

A0A5D3DHE3 Uncharacterized protein

8.9e-69

80.35

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Query:  MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK
        MA R+L +R+AAN FRT NKS ++YATAT  RMKSYAP ADFS FDH     QSKPKASRAGDFVPVYVAIG+IALSV LGLHTAKQQLA+SPSVSVRKK
Subjt:  MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK

Query:  RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN
        RRETIPEV EPEHVAEETEKFFAKSFFRKVAHVQE+EK  +Y+VPYDP LGDAYAH HRTE+L+SVG+DPA N
Subjt:  RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN

A0A6J1G139 uncharacterized protein LOC111449717

1.3e-88

100

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Query:  MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK
        MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK
Subjt:  MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK

Query:  RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN
        RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN
Subjt:  RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN

A0A6J1HUK3 uncharacterized protein LOC111467595

1.4e-85

97.11

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Query:  MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK
        MAFR+LA R+AANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDH+YQQQQSK KASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK
Subjt:  MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKK

Query:  RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN
        RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN
Subjt:  RRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G63060.1 unknown protein

1.1e-15

37.82

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Query:  QQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKKRRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLG
        +Q+  K S  G+F PV +  G + L+V +  H+ KQQL H+P++S RK RR  + EV +PE+     +KF  KS+ RKV  +Q+  K     +  DP   
Subjt:  QQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKKRRETIPEVAEPEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLG

Query:  DAYAHRHRTETLRSVGVDP
        + +      ETL SVGV P
Subjt:  DAYAHRHRTETLRSVGVDP

AT5G07330.1 unknown protein

3.0e-24

44.3

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Query:  KSYATATEA-RMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKKRRETIPEVAEPEHVAEETEKF
        ++Y  AT   R K+Y+ AA          Q+ +   A+  GDF PVYV+IGLI+LSV  G++TA   L  +P V V KK RET+PE+ +P+ V  E ++F
Subjt:  KSYATATEA-RMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKKRRETIPEVAEPEHVAEETEKF

Query:  FAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDP
          +S+FRK+AHVQE +K     V  DP   D +AH+ R  TL+ VGVDP
Subjt:  FAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDP

Sequences

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CDS sequence

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ATGGCGTTCAGGTTTTTGGCAACTCGATTGGCAGCAAATAGCTTCAGAACTGTGAATAAAAGCCCTAAGTCATATGCTACGGCGACGGAGGCGAGGATGAAATCATACGC
GCCGGCGGCCGATTTCTCGCGATTCGATCACAATTACCAGCAGCAACAGAGCAAGCCGAAGGCGTCACGAGCCGGCGATTTTGTCCCCGTCTATGTGGCGATCGGTCTGA
TTGCGCTTTCTGTAGCCCTCGGATTGCACACGGCGAAGCAGCAGTTGGCTCATTCGCCGTCCGTTTCCGTTCGGAAGAAGCGCAGAGAGACGATTCCGGAGGTGGCAGAG
CCAGAGCACGTGGCGGAGGAGACTGAGAAGTTCTTCGCTAAATCGTTCTTCAGAAAAGTGGCTCACGTTCAGGAACTCGAGAAATTACGCAATTATCGCGTTCCTTACGA
TCCTCAACTCGGCGATGCTTATGCTCATCGCCACCGTACTGAGACGCTCAGGTCCGTCGGTGTCGATCCGGCTTCGAACTGA

mRNA sequence

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Protein sequence

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MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASRAGDFVPVYVAIGLIALSVALGLHTAKQQLAHSPSVSVRKKRRETIPEVAE
PEHVAEETEKFFAKSFFRKVAHVQELEKLRNYRVPYDPQLGDAYAHRHRTETLRSVGVDPASN

Carg22131 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome