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Carg22134 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22134
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA-directed primase/polymerase protein
Genome locationCarg_Chr18:11492735..11495644
RNA-Seq ExpressionCarg22134
SyntenyCarg22134
Gene Ontology termsGO:0006269 - DNA replication, synthesis of RNA primer (biological process)
GO:0042276 - error-prone translesion synthesis (biological process)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003896 - DNA primase activity (molecular function)
InterPro domainsIPR044917 - DNA-directed primase/polymerase protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013266.1 hypothetical protein SDJN02_26024, partial [Cucurbita argyrosperma subsp. argyrosperma]6.2e-90100Show/hide
Query:  MYCESRKEIQDNATNGQDFMEKSYNSPRGVPPRRPSSLWRLLLEIRVELSEQSRFKLSVMKTCSWHPWSATSMLSVRNFCVKTLQFDMEEICNFGRFVES
        MYCESRKEIQDNATNGQDFMEKSYNSPRGVPPRRPSSLWRLLLEIRVELSEQSRFKLSVMKTCSWHPWSATSMLSVRNFCVKTLQFDMEEICNFGRFVES
Subjt:  MYCESRKEIQDNATNGQDFMEKSYNSPRGVPPRRPSSLWRLLLEIRVELSEQSRFKLSVMKTCSWHPWSATSMLSVRNFCVKTLQFDMEEICNFGRFVES

Query:  AASTGNVSVMYVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRVSTDSEQISNGIESSN
        AASTGNVSVMYVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRVSTDSEQISNGIESSN
Subjt:  AASTGNVSVMYVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRVSTDSEQISNGIESSN

TYK23011.1 DNA-directed primase/polymerase protein isoform X2 [Cucumis melo var. makuwa]1.0e-2354.24Show/hide
Query:  CVKTLQFDMEEICNFGR---------------------------------FVESAASTGNVSVMYVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPN
        C+KTLQF+ EE CNFGR                                 FV+S ASTG+V+VMYVVDL +A YYQKCHDPDC GYRSPLRP PIDAIP+
Subjt:  CVKTLQFDMEEICNFGR---------------------------------FVESAASTGNVSVMYVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPN

Query:  PRVSTDSEQISNGIESSN
        P VSTDS QISN + S++
Subjt:  PRVSTDSEQISNGIESSN

XP_016899008.1 PREDICTED: DNA-directed primase/polymerase protein isoform X2 [Cucumis melo]1.0e-2354.24Show/hide
Query:  CVKTLQFDMEEICNFGR---------------------------------FVESAASTGNVSVMYVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPN
        C+KTLQF+ EE CNFGR                                 FV+S ASTG+V+VMYVVDL +A YYQKCHDPDC GYRSPLRP PIDAIP+
Subjt:  CVKTLQFDMEEICNFGR---------------------------------FVESAASTGNVSVMYVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPN

Query:  PRVSTDSEQISNGIESSN
        P VSTDS QISN + S++
Subjt:  PRVSTDSEQISNGIESSN

XP_016899008.1 PREDICTED: DNA-directed primase/polymerase protein isoform X2 [Cucumis melo]7.7e-0854.29Show/hide
Query:  KEIQDNATNGQDFMEK------------------SYNSPRGVPPRRPSSLWRLLLEIRVELSEQSRFKLS
        +E ++NA++ QD +EK                   Y SPRGVPP+RPSSLWRLL EIRV+LSEQSRFKLS
Subjt:  KEIQDNATNGQDFMEK------------------SYNSPRGVPPRRPSSLWRLLLEIRVELSEQSRFKLS

XP_016899008.1 PREDICTED: DNA-directed primase/polymerase protein isoform X2 [Cucumis melo]8.8e-2044.16Show/hide
Query:  CVKTLQFDMEEICNFGR---------------------------------FVESAASTGNVS------------------------------------VM
        CVKTLQF+MEE CNFGR                                 FVES ASTG+VS                                    VM
Subjt:  CVKTLQFDMEEICNFGR---------------------------------FVESAASTGNVS------------------------------------VM

Query:  YVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRVSTDSEQISNGIESSN
        YVVDL  A YYQKCHDPDC GYRSPLRP+PID+IP+  VSTDSEQISN  ES++
Subjt:  YVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRVSTDSEQISNGIESSN

XP_022922834.1 DNA-directed primase/polymerase protein [Cucurbita moschata]8.8e-2044.16Show/hide
Query:  CVKTLQFDMEEICNFGR---------------------------------FVESAASTGNVS------------------------------------VM
        CVKTLQF+MEE CNFGR                                 FVES ASTG+VS                                    VM
Subjt:  CVKTLQFDMEEICNFGR---------------------------------FVESAASTGNVS------------------------------------VM

Query:  YVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRVSTDSEQISNGIESSN
        YVVDL  A YYQKCHDPDC GYRSPLRP+PID+IP+  VSTDSEQISN  ES++
Subjt:  YVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRVSTDSEQISNGIESSN

TrEMBL top hitse value%identityAlignment
A0A1S4DSS4 DNA-directed primase/polymerase protein isoform X24.8e-2454.24Show/hide
Query:  CVKTLQFDMEEICNFGR---------------------------------FVESAASTGNVSVMYVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPN
        C+KTLQF+ EE CNFGR                                 FV+S ASTG+V+VMYVVDL +A YYQKCHDPDC GYRSPLRP PIDAIP+
Subjt:  CVKTLQFDMEEICNFGR---------------------------------FVESAASTGNVSVMYVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPN

Query:  PRVSTDSEQISNGIESSN
        P VSTDS QISN + S++
Subjt:  PRVSTDSEQISNGIESSN

A0A1S4DSS4 DNA-directed primase/polymerase protein isoform X23.7e-0854.29Show/hide
Query:  KEIQDNATNGQDFMEK------------------SYNSPRGVPPRRPSSLWRLLLEIRVELSEQSRFKLS
        +E ++NA++ QD +EK                   Y SPRGVPP+RPSSLWRLL EIRV+LSEQSRFKLS
Subjt:  KEIQDNATNGQDFMEK------------------SYNSPRGVPPRRPSSLWRLLLEIRVELSEQSRFKLS

A0A1S4DSS4 DNA-directed primase/polymerase protein isoform X24.2e-2044.16Show/hide
Query:  CVKTLQFDMEEICNFGR---------------------------------FVESAASTGNVS------------------------------------VM
        CVKTLQF+MEE CNFGR                                 FVES ASTG+VS                                    VM
Subjt:  CVKTLQFDMEEICNFGR---------------------------------FVESAASTGNVS------------------------------------VM

Query:  YVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRVSTDSEQISNGIESSN
        YVVDL  A YYQKCHDPDC GYRSPLRP+PID+IP+  VSTDSEQISN  ES++
Subjt:  YVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRVSTDSEQISNGIESSN

A0A5D3DH78 DNA-directed primase/polymerase protein isoform X24.8e-2454.24Show/hide
Query:  CVKTLQFDMEEICNFGR---------------------------------FVESAASTGNVSVMYVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPN
        C+KTLQF+ EE CNFGR                                 FV+S ASTG+V+VMYVVDL +A YYQKCHDPDC GYRSPLRP PIDAIP+
Subjt:  CVKTLQFDMEEICNFGR---------------------------------FVESAASTGNVSVMYVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPN

Query:  PRVSTDSEQISNGIESSN
        P VSTDS QISN + S++
Subjt:  PRVSTDSEQISNGIESSN

A0A6J1CHF5 DNA-directed primase/polymerase protein2.1e-1943.71Show/hide
Query:  CVKTLQFDMEEICNFGR---------------------------------FVESAASTGNVS------------------------------------VM
        CVKTLQF+MEE CNFGR                                 FVES ASTG+VS                                    V+
Subjt:  CVKTLQFDMEEICNFGR---------------------------------FVESAASTGNVS------------------------------------VM

Query:  YVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRVSTDSEQISNGIE
        YVVDL  A YYQKCHDPDC GYRSPLRP PIDA+P+P VSTDSEQI N  E
Subjt:  YVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRVSTDSEQISNGIE

A0A6J1JB70 DNA-directed primase/polymerase protein-like1.6e-1942.86Show/hide
Query:  CVKTLQFDMEEICNFGR---------------------------------FVESAASTGNVS------------------------------------VM
        CV+TLQF+MEE CNFGR                                 FV+S ASTG+VS                                    VM
Subjt:  CVKTLQFDMEEICNFGR---------------------------------FVESAASTGNVS------------------------------------VM

Query:  YVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRVSTDSEQISNGIESSN
        YVVDL  A YYQKCHDPDC GYRSPLRP+PID+IP+  VSTDSEQISN  ES++
Subjt:  YVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRVSTDSEQISNGIESSN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G52800.1 DNA primases1.1e-0461.29Show/hide
Query:  YNSPRGVPPRRPSSLWRLLLEIRVELSEQSR
        Y SP GVPP++P SL RLL EIR++LSE+ +
Subjt:  YNSPRGVPPRRPSSLWRLLLEIRVELSEQSR

AT5G52800.2 DNA primases1.1e-0461.29Show/hide
Query:  YNSPRGVPPRRPSSLWRLLLEIRVELSEQSR
        Y SP GVPP++P SL RLL EIR++LSE+ +
Subjt:  YNSPRGVPPRRPSSLWRLLLEIRVELSEQSR

AT5G52800.3 DNA primases2.6e-0958.54Show/hide
Query:  VMYVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRV
        VMY+VDL   +YYQKC+DPDC  YRSP+RP P   +P   V
Subjt:  VMYVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRV

AT5G52800.3 DNA primases1.1e-0461.29Show/hide
Query:  YNSPRGVPPRRPSSLWRLLLEIRVELSEQSR
        Y SP GVPP++P SL RLL EIR++LSE+ +
Subjt:  YNSPRGVPPRRPSSLWRLLLEIRVELSEQSR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACTGCGAATCTCGTAAGGAAATACAGGACAATGCAACGAACGGCCAAGATTTCATGGAAAAATCTTATAATTCACCTAGAGGCGTACCTCCGAGGAGGCCATCTAG
TTTGTGGAGATTATTGCTTGAAATTCGTGTCGAGCTTTCTGAACAAAGTAGATTCAAGTTAAGTGTGATGAAGACATGTTCGTGGCATCCTTGGTCTGCAACGTCGATGC
TGAGTGTGAGAAACTTCTGCGTAAAGACATTGCAATTTGATATGGAGGAGATATGTAATTTTGGACGGTTTGTTGAATCAGCTGCCTCAACCGGAAATGTATCAGTGATG
TATGTTGTCGACCTTACGACGGCTGTCTATTACCAAAAGTGTCACGATCCAGATTGTGGAGGTTACCGATCTCCACTGCGTCCAAGTCCAATTGATGCCATTCCTAATCC
TCGGGTCTCCACGGATTCAGAACAGATATCAAATGGCATAGAGTCGTCCAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTACTGCGAATCTCGTAAGGAAATACAGGACAATGCAACGAACGGCCAAGATTTCATGGAAAAATCTTATAATTCACCTAGAGGCGTACCTCCGAGGAGGCCATCTAG
TTTGTGGAGATTATTGCTTGAAATTCGTGTCGAGCTTTCTGAACAAAGTAGATTCAAGTTAAGTGTGATGAAGACATGTTCGTGGCATCCTTGGTCTGCAACGTCGATGC
TGAGTGTGAGAAACTTCTGCGTAAAGACATTGCAATTTGATATGGAGGAGATATGTAATTTTGGACGGTTTGTTGAATCAGCTGCCTCAACCGGAAATGTATCAGTGATG
TATGTTGTCGACCTTACGACGGCTGTCTATTACCAAAAGTGTCACGATCCAGATTGTGGAGGTTACCGATCTCCACTGCGTCCAAGTCCAATTGATGCCATTCCTAATCC
TCGGGTCTCCACGGATTCAGAACAGATATCAAATGGCATAGAGTCGTCCAACTGATGCCATCTTCGTGCATGCGTTTCCAACTCGCGAGCCGCTACGTTTCGGATGCAAG
GTAAGCAAAAATCCCTGAACGCCTAATTATTTTCTGAACTCTTTGATATTGTCCATAGTTAATTGAGCTTAAGAGTCAAATTGTTCTGCTCCCCTCTCTAAGCTCCACAC
CATTAGAGAATCGGTTTTATTAACACAAATAGGATAAATTTCTATCTCGATCGCTATTAGCCATGGTTCGAAACATGAAATTAAATAGTAATTTTTACAAAAGCTTGACA
TAAATTTGTTACATTCAAAAGCGTCGCTATAGTAAATTAGCCCCCCACCTGTTGAAAATGAAAACTCAAGATATTACT
Protein sequenceShow/hide protein sequence
MYCESRKEIQDNATNGQDFMEKSYNSPRGVPPRRPSSLWRLLLEIRVELSEQSRFKLSVMKTCSWHPWSATSMLSVRNFCVKTLQFDMEEICNFGRFVESAASTGNVSVM
YVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRVSTDSEQISNGIESSN