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Carg22137 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22137
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat superfamily protein, putative isoform 2
Genome locationCarg_Chr18:11504313..11506270
RNA-Seq ExpressionCarg22137
SyntenyCarg22137
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6574205.1 hypothetical protein SDJN03_28092, partial [Cucurbita argyrosperma subsp. sororia]2.7e-6597.71Show/hide
Query:  MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAENLGSASDPIKQNRRQYH
        MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAE+LGSASDPIKQNRRQYH
Subjt:  MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAENLGSASDPIKQNRRQYH

Query:  PSEELVKSRSENAEDVRPTAAETSRTIVEVS
        PSEELVKSRSENAEDVRPTAAETSRTI+EV+
Subjt:  PSEELVKSRSENAEDVRPTAAETSRTIVEVS

KAG7013269.1 hypothetical protein SDJN02_26027 [Cucurbita argyrosperma subsp. argyrosperma]7.1e-74100Show/hide
Query:  MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAENLGSASDPIKQNRRQYH
        MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAENLGSASDPIKQNRRQYH
Subjt:  MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAENLGSASDPIKQNRRQYH

Query:  PSEELVKSRSENAEDVRPTAAETSRTIVEVSVYTNALLNLHTYL
        PSEELVKSRSENAEDVRPTAAETSRTIVEVSVYTNALLNLHTYL
Subjt:  PSEELVKSRSENAEDVRPTAAETSRTIVEVSVYTNALLNLHTYL

XP_023522718.1 uncharacterized protein At3g49140-like isoform X1 [Cucurbita pepo subsp. pepo]2.7e-6597.71Show/hide
Query:  MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAENLGSASDPIKQNRRQYH
        MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAE+LGSASDPIKQNRRQYH
Subjt:  MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAENLGSASDPIKQNRRQYH

Query:  PSEELVKSRSENAEDVRPTAAETSRTIVEVS
        PSEELVKSRSENAEDVRPTAAETSRTI+EV+
Subjt:  PSEELVKSRSENAEDVRPTAAETSRTIVEVS

XP_023522719.1 uncharacterized protein At3g49140-like isoform X2 [Cucurbita pepo subsp. pepo]2.7e-6597.71Show/hide
Query:  MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAENLGSASDPIKQNRRQYH
        MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAE+LGSASDPIKQNRRQYH
Subjt:  MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAENLGSASDPIKQNRRQYH

Query:  PSEELVKSRSENAEDVRPTAAETSRTIVEVS
        PSEELVKSRSENAEDVRPTAAETSRTI+EV+
Subjt:  PSEELVKSRSENAEDVRPTAAETSRTIVEVS

XP_023541607.1 uncharacterized protein At3g49140-like isoform X2 [Cucurbita pepo subsp. pepo]2.7e-6597.71Show/hide
Query:  MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAENLGSASDPIKQNRRQYH
        MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAE+LGSASDPIKQNRRQYH
Subjt:  MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAENLGSASDPIKQNRRQYH

Query:  PSEELVKSRSENAEDVRPTAAETSRTIVEVS
        PSEELVKSRSENAEDVRPTAAETSRTI+EV+
Subjt:  PSEELVKSRSENAEDVRPTAAETSRTIVEVS

TrEMBL top hitse value%identityAlignment
A0A6J1CHK0 uncharacterized protein At3g49140-like1.5e-4878.95Show/hide
Query:  MIETALAVRFPAGANFCYSSAL-SHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAENLGSASDPIKQNRR-Q
        MIETALAVRFPAGANFC+SS   S+HRSAW SEDVT+IGH S FCRLLHSCASDV WKRC+ LNS+  L RN  R+NGI ASAE LGSASDPIKQN R Q
Subjt:  MIETALAVRFPAGANFCYSSAL-SHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAENLGSASDPIKQNRR-Q

Query:  YHPSEELVKSRSENAEDVRPTAAETSRTIVEVS
        YHPSEELVKS +ENAEDVRPTAAET+RTI+EV+
Subjt:  YHPSEELVKSRSENAEDVRPTAAETSRTIVEVS

A0A6J1G1V9 uncharacterized protein At3g49140-like isoform X13.8e-6596.95Show/hide
Query:  MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAENLGSASDPIKQNRRQYH
        MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAENL SASDPIKQNRRQYH
Subjt:  MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAENLGSASDPIKQNRRQYH

Query:  PSEELVKSRSENAEDVRPTAAETSRTIVEVS
        PSEELVKSRSENAEDVRPTAAET+RTI+EV+
Subjt:  PSEELVKSRSENAEDVRPTAAETSRTIVEVS

A0A6J1HTI8 uncharacterized protein At3g49140-like isoform X15.0e-6596.18Show/hide
Query:  MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAENLGSASDPIKQNRRQYH
        MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAE+LGSASDP+KQNRRQYH
Subjt:  MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAENLGSASDPIKQNRRQYH

Query:  PSEELVKSRSENAEDVRPTAAETSRTIVEVS
        PSEELVKSRSENAEDVRPTAAET+RTI+EV+
Subjt:  PSEELVKSRSENAEDVRPTAAETSRTIVEVS

A0A6J1HY16 uncharacterized protein At3g49140-like isoform X25.0e-6596.18Show/hide
Query:  MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAENLGSASDPIKQNRRQYH
        MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAE+LGSASDP+KQNRRQYH
Subjt:  MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAENLGSASDPIKQNRRQYH

Query:  PSEELVKSRSENAEDVRPTAAETSRTIVEVS
        PSEELVKSRSENAEDVRPTAAET+RTI+EV+
Subjt:  PSEELVKSRSENAEDVRPTAAETSRTIVEVS

A0A6J1JB77 uncharacterized protein At3g49140-like6.5e-4978.79Show/hide
Query:  MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAENLGSASDPIKQNRR-QY
        MIETALAVRF  GANFCYSSALS+HR AWTSEDVT IGHA+  CRL  SCASDVQWKRC+ LNS+S L +NN +KNGI ASAENLGSASDPIKQNRR QY
Subjt:  MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAENLGSASDPIKQNRR-QY

Query:  HPSEELVKSRSENAEDVRPTAAETSRTIVEVS
        HPSEE VKS +E AEDVRPT+AET+RTI+EV+
Subjt:  HPSEELVKSRSENAEDVRPTAAETSRTIVEVS

SwissProt top hitse value%identityAlignment
Q0WMN5 Uncharacterized protein At3g491406.1e-1238.85Show/hide
Query:  MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLE-------RNNFRKNGIHASAENLGSASDPIK
        MIE+ +AVR   G  FC S+AL  +R+A +SE+  N  H        ++     Q +R   ++   FL+       R + RKN   A+AE + SASDP K
Subjt:  MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLE-------RNNFRKNGIHASAENLGSASDPIK

Query:  Q-NRRQYHPSEELVKSRSENAEDVRPTAAETSRTIVEVS
        Q  + +YHPSEE+  S  +N  D R + AET+RTI+EV+
Subjt:  Q-NRRQYHPSEELVKSRSENAEDVRPTAAETSRTIVEVS

Arabidopsis top hitse value%identityAlignment
AT3G49140.1 Pentatricopeptide repeat (PPR) superfamily protein4.4e-1338.85Show/hide
Query:  MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLE-------RNNFRKNGIHASAENLGSASDPIK
        MIE+ +AVR   G  FC S+AL  +R+A +SE+  N  H        ++     Q +R   ++   FL+       R + RKN   A+AE + SASDP K
Subjt:  MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLE-------RNNFRKNGIHASAENLGSASDPIK

Query:  Q-NRRQYHPSEELVKSRSENAEDVRPTAAETSRTIVEVS
        Q  + +YHPSEE+  S  +N  D R + AET+RTI+EV+
Subjt:  Q-NRRQYHPSEELVKSRSENAEDVRPTAAETSRTIVEVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGAAACTGCTCTGGCCGTGCGATTCCCCGCCGGCGCCAACTTCTGCTACTCCTCCGCTTTGTCTCATCACCGTTCAGCTTGGACTTCGGAGGATGTGACTAATAT
AGGCCATGCTAGCGGCTTTTGTCGGCTTTTGCATTCTTGCGCTTCCGACGTGCAATGGAAAAGATGCCGAAGCCTTAACAGTAAGTCCTTCTTGGAAAGGAACAATTTCA
GAAAAAATGGAATTCATGCATCGGCAGAGAATTTGGGTTCTGCGTCAGATCCAATTAAACAAAATAGGAGACAATATCATCCATCCGAGGAGCTCGTGAAATCAAGATCA
GAGAATGCCGAGGATGTTAGACCTACTGCCGCAGAAACTAGTAGAACAATCGTTGAGGTATCAGTTTATACTAATGCTCTTCTCAATCTTCATACTTATTTGTGA
mRNA sequenceShow/hide mRNA sequence
AACGCACAACTTCTTTGAGAAAATGCCTGTGGATCACCTACTTCAATAGCGCGTTACCAAGGAAAAAGAAAAGTTGAGAGAATGATCGAAACTGCTCTGGCCGTGCGATT
CCCCGCCGGCGCCAACTTCTGCTACTCCTCCGCTTTGTCTCATCACCGTTCAGCTTGGACTTCGGAGGATGTGACTAATATAGGCCATGCTAGCGGCTTTTGTCGGCTTT
TGCATTCTTGCGCTTCCGACGTGCAATGGAAAAGATGCCGAAGCCTTAACAGTAAGTCCTTCTTGGAAAGGAACAATTTCAGAAAAAATGGAATTCATGCATCGGCAGAG
AATTTGGGTTCTGCGTCAGATCCAATTAAACAAAATAGGAGACAATATCATCCATCCGAGGAGCTCGTGAAATCAAGATCAGAGAATGCCGAGGATGTTAGACCTACTGC
CGCAGAAACTAGTAGAACAATCGTTGAGGTATCAGTTTATACTAATGCTCTTCTCAATCTTCATACTTATTTGTGA
Protein sequenceShow/hide protein sequence
MIETALAVRFPAGANFCYSSALSHHRSAWTSEDVTNIGHASGFCRLLHSCASDVQWKRCRSLNSKSFLERNNFRKNGIHASAENLGSASDPIKQNRRQYHPSEELVKSRS
ENAEDVRPTAAETSRTIVEVSVYTNALLNLHTYL