CuGenDBv2

Gene ID	Carg22192
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	R3H-assoc domain-containing protein
Genome location	Carg_Chr07:4971918..4975197
RNA-Seq Expression	Carg22192
Synteny	Carg22192
Gene Ontology terms	GO:0009058 - biosynthetic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003824 - catalytic activity (molecular function)
InterPro domains	IPR025952 - R3H-associated N-terminal domain IPR039629 - R3H domain-containing protein 4

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0057614.1 R3H domain-containing protein 4 [Cucumis melo var. makuwa]

2.1e-75

68.28

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Query:  MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW
        MASTDVL +E N F FS  +DP+ GD +SRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW
Subjt:  MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW

Query:  DKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR--------------------------------------------LLQS
        DKFRSIDMDKEAK+IGV ENSS++R+GHIDADKMAFLNAWRRIE RTREALR                                             LQ 
Subjt:  DKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR--------------------------------------------LLQS

Query:  RFCDCSRVEGLWLYEDDSDNKEEEGHG
         FCD S V+   LYEDD DNKEEEGHG
Subjt:  RFCDCSRVEGLWLYEDDSDNKEEEGHG

KAG7027264.1 hypothetical protein SDJN02_11276, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.3e-100

100

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Query:  MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW
        MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW
Subjt:  MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW

Query:  DKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALRLLQSRFCDCSRVEGLWLYEDDSDNKEEEGHG
        DKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALRLLQSRFCDCSRVEGLWLYEDDSDNKEEEGHG
Subjt:  DKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALRLLQSRFCDCSRVEGLWLYEDDSDNKEEEGHG

XP_022960434.1 R3H domain-containing protein 4-like [Cucurbita moschata]

3.8e-80

100

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Query:  MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW
        MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW
Subjt:  MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW

Query:  DKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR
        DKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR
Subjt:  DKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR

XP_023004636.1 R3H domain-containing protein 4-like [Cucurbita maxima]

7.1e-79

98.03

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Query:  MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW
        MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW
Subjt:  MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW

Query:  DKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR
        DKFRSIDMDKEAKLIGVL+NSSARR+GHI+ADKMAFLNAWRRIESRTREALR
Subjt:  DKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR

XP_023515083.1 R3H domain-containing protein 4-like [Cucurbita pepo subsp. pepo]

1.9e-79

98.68

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Query:  MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW
        MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW
Subjt:  MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW

Query:  DKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR
        DKFRSIDMDKEAKLIGVLENSSAR++GHIDADKMAFLNAWRRIESRTREALR
Subjt:  DKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR

TrEMBL top hits

e value

%identity

Alignment

A0A5D3DBN9 R3H domain-containing protein 4

1.0e-75

68.28

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Query:  MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW
        MASTDVL +E N F FS  +DP+ GD +SRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW
Subjt:  MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW

Query:  DKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR--------------------------------------------LLQS
        DKFRSIDMDKEAK+IGV ENSS++R+GHIDADKMAFLNAWRRIE RTREALR                                             LQ 
Subjt:  DKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR--------------------------------------------LLQS

Query:  RFCDCSRVEGLWLYEDDSDNKEEEGHG
         FCD S V+   LYEDD DNKEEEGHG
Subjt:  RFCDCSRVEGLWLYEDDSDNKEEEGHG

A0A6J1D8S2 uncharacterized protein LOC111018421 isoform X2

2.8e-73

90.79

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Query:  MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW
        MASTDVL + +NR TFSPL DPIKGD +SRGMSIEKKIEFLESL GKVTNRKSRRWLNDRLLMELVPRLNAEE+RGLFAPPPWGDDVRPTTFSMTNAEDW
Subjt:  MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW

Query:  DKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR
        DKFRSIDMDKEAK+IGVLENSSA+R+GHIDADKMAFLNAWRRIE RTREALR
Subjt:  DKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR

A0A6J1DA21 uncharacterized protein LOC111018421 isoform X1

2.8e-73

90.79

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Query:  MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW
        MASTDVL + +NR TFSPL DPIKGD +SRGMSIEKKIEFLESL GKVTNRKSRRWLNDRLLMELVPRLNAEE+RGLFAPPPWGDDVRPTTFSMTNAEDW
Subjt:  MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW

Query:  DKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR
        DKFRSIDMDKEAK+IGVLENSSA+R+GHIDADKMAFLNAWRRIE RTREALR
Subjt:  DKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR

A0A6J1HB10 R3H domain-containing protein 4-like

1.8e-80

100

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Query:  MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW
        MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW
Subjt:  MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW

Query:  DKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR
        DKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR
Subjt:  DKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR

A0A6J1KSN3 R3H domain-containing protein 4-like

3.4e-79

98.03

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Query:  MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW
        MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW
Subjt:  MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDW

Query:  DKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR
        DKFRSIDMDKEAKLIGVL+NSSARR+GHI+ADKMAFLNAWRRIESRTREALR
Subjt:  DKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G03250.1 unknown protein

4.6e-52

64.05

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Query:  MASTDVLNQEQNRFTFSPLSDPIKGDEN-SRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAED
        MA+T+V+ +++     S L DP +GD + SRG+S+EKKIE LESL G+V+NR+SRRWLNDR+LMELVPRL+A+EIRGLFAPPPWGDDV P+ FS+TN  +
Subjt:  MASTDVLNQEQNRFTFSPLSDPIKGDEN-SRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAED

Query:  WDKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR
        WDKFR+IDMDKEA ++  L  SS R++G +D DK+A LNAWRRI+ RTR+ALR
Subjt:  WDKFRSIDMDKEAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR

AT1G03250.2 unknown protein

4.3e-50

61.64

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Query:  MASTDVLNQEQNRFTFSPLSDPIKGDEN-SRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAED
        MA+T+V+ +++     S L DP +GD + SRG+S+EKKIE LESL G+V+NR+SRRWLNDR+LMELVPRL+A+EIRGLFAPPPWGDDV P+ FS+TN  +
Subjt:  MASTDVLNQEQNRFTFSPLSDPIKGDEN-SRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAED

Query:  WDKFRSIDMDKE------AKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR
        WDKFR+IDMDKE      A ++  L  SS R++G +D DK+A LNAWRRI+ RTR+ALR
Subjt:  WDKFRSIDMDKE------AKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALR

Sequences

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CDS sequence

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mRNA sequence

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ATGGCGTCCACTGATGTTCTTAACCAAGAACAGAATCGTTTCACCTTTTCCCCTCTCAGCGATCCAATTAAAGGCGATGAGAATTCTCGGGGTATGTCCATCGAGAAAAA
GATTGAATTTCTGGAGAGCTTGACTGGAAAGGTTACTAATAGGAAGTCTCGCAGATGGTTAAACGATCGACTTTTAATGGAGCTTGTTCCTCGTTTGAATGCCGAGGAAA
TTAGAGGCTTGTTTGCTCCACCGCCTTGGGGTGATGATGTACGGCCCACAACGTTCTCCATGACTAACGCAGAAGACTGGGACAAATTCAGGAGTATTGACATGGATAAA
GAGGCTAAGCTCATTGGAGTCTTGGAGAACTCATCCGCTAGGAGAAGGGGTCATATCGATGCTGACAAAATGGCTTTCTTGAATGCCTGGCGCAGAATAGAGAGTCGAAC
AAGAGAGGCACTTCGTCTTCTACAATCTAGATTCTGCGACTGTTCCCGAGTCGAAGGGCTCTGGCTGTACGAAGATGACTCGGATAACAAGGAAGAAGAAGGCCATGGTT
GAGATCCCAAATATAACTCTGACCCATTTTCTTAAGATGTCCAAAGAAGGAACATGGTAACTTCAATCCATTAGGTGAATAAACTTGATAGGCTTTTTCATTGATGTTCA
TTACAATAAGGATCAAATTATTTAGACGTTTGGTACTGTACAGATGTTGCTTAAATCCTGCTACTGGACTGGCGTGTACTGTAAATTAGCTTAATTGTGCCGTTTATATA
TCATTTGATCAGGGAAATACGTGTTACAGATATTGTTATCTTTGATCTTTTCTTTTCGATCTTCTTCACGAGGTCTTTTAAATGGATATGTGGATCTGTCAGGGAAATGT
TTTCACACTTTTATAAGAAATGTTTTGTTCTCTCTCCAA

Protein sequence

Show/hide protein sequence

MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDK
EAKLIGVLENSSARRRGHIDADKMAFLNAWRRIESRTREALRLLQSRFCDCSRVEGLWLYEDDSDNKEEEGHG

Carg22192 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome