; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg22202 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22202
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionBEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3A .
Genome locationCarg_Chr16:3379662..3384039
RNA-Seq ExpressionCarg22202
SyntenyCarg22202
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7015189.1 hypothetical protein SDJN02_22822 [Cucurbita argyrosperma subsp. argyrosperma]8.0e-73100Show/hide
Query:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
        MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
Subjt:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLYPFYFMPSRPF
        LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLYPFYFMPSRPF
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLYPFYFMPSRPF

XP_004146523.1 uncharacterized protein LOC101210623 [Cucumis sativus]2.3e-4882.48Show/hide
Query:  MEQSPSDSS-SSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAG
        MEQSP+DSS +SIE   QIPATSPNS      T SV+EDCT+ +SSLS  +I KAI+VVEKDSLA+AESFTSLFASLRS LSEVTSNSIDHMHCFNDAAG
Subjt:  MEQSPSDSS-SSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAG

Query:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL
        RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL
Subjt:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL

XP_022931514.1 uncharacterized protein LOC111437668 [Cucurbita moschata]3.6e-65100Show/hide
Query:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
        MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
Subjt:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL
        LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL

XP_022984532.1 uncharacterized protein LOC111482798 [Cucurbita maxima]6.8e-6498.53Show/hide
Query:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
        MEQSPSDSSSSIEAG QIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEK+SLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
Subjt:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL
        LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL

XP_023553161.1 uncharacterized protein LOC111810650 [Cucurbita pepo subsp. pepo]3.0e-6498.53Show/hide
Query:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
        MEQSPSDSS+SIE GRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
Subjt:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL
        LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL

TrEMBL top hitse value%identityAlignment
A0A0A0KWT2 Uncharacterized protein1.1e-4882.48Show/hide
Query:  MEQSPSDSS-SSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAG
        MEQSP+DSS +SIE   QIPATSPNS      T SV+EDCT+ +SSLS  +I KAI+VVEKDSLA+AESFTSLFASLRS LSEVTSNSIDHMHCFNDAAG
Subjt:  MEQSPSDSS-SSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAG

Query:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL
        RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL
Subjt:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL

A0A1S3BTP0 uncharacterized protein LOC1034931563.3e-4882.48Show/hide
Query:  MEQSPSDSS-SSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAG
        MEQSP+DSS +SIE   QIPATSPNS      T S +EDCT+ +SSLS T+I +AI+VVEKDSLAIAESFTSLFASLRS LSEVTSNSIDHMHCFNDAAG
Subjt:  MEQSPSDSS-SSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAG

Query:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL
        RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL
Subjt:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL

A0A6J1C5W4 uncharacterized protein LOC111008257 isoform X13.3e-4876.98Show/hide
Query:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
        M+Q+ +D S+ I++  QIP TSPNS + E PTCSVLED T+ +  L  TEIFKAI+VVEKDSLAIAESFTSLFASLRS LSE + NSIDHMHCF+DAAG 
Subjt:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLYPF
        LQESVLDAATKGNRYINSSLRLNQEMKG+DNLAAQLYPF
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLYPF

A0A6J1EUG1 uncharacterized protein LOC1114376681.7e-65100Show/hide
Query:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
        MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
Subjt:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL
        LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL

A0A6J1J2E9 uncharacterized protein LOC1114827983.3e-6498.53Show/hide
Query:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
        MEQSPSDSSSSIEAG QIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEK+SLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
Subjt:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL
        LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G23330.1 BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3A (TAIR:AT4G11420.1)1.1e-2457.76Show/hide
Query:  DSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGRLQESVL
        D+ + I+  R + A S     PE       E  + P SSL+  EI K +  VEKDS AIAESF+SLF SLRSTLSE T +S+DHM CF +AAGRLQE+ L
Subjt:  DSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGRLQESVL

Query:  DAATKGNRYINSSLRL
        DAATKGNRYINS LRL
Subjt:  DAATKGNRYINSSLRL

AT4G23330.2 unknown protein8.1e-3158.46Show/hide
Query:  DSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGRLQESVL
        D+ + I+  R + A S     PE       E  + P SSL+  EI K +  VEKDS AIAESF+SLF SLRSTLSE T +S+DHM CF +AAGRLQE+ L
Subjt:  DSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGRLQESVL

Query:  DAATKGNRYINSSLRLNQEMKGMDNLAAQL
        DAATKGNRYINS LRLN+E+KG++NLAA+L
Subjt:  DAATKGNRYINSSLRLNQEMKGMDNLAAQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCAATCCCCATCGGATTCTTCGTCGAGCATCGAAGCCGGACGTCAGATTCCGGCGACATCTCCAAATTCGGCCATTCCCGAGACGCCCACTTGTTCTGTTCTTGA
GGACTGCACCAGACCCAGATCTTCGTTGAGCCATACCGAGATTTTCAAAGCCATTGATGTCGTCGAGAAGGACTCTCTCGCCATTGCCGAGAGCTTTACCTCTCTCTTCG
CTTCCCTGCGTTCGACTCTCTCCGAGGTCACCAGCAACTCTATTGATCATATGCATTGCTTCAACGATGCTGCAGGCCGCCTTCAAGAATCTGTGCTTGATGCGGCAACA
AAGGGTAATCGATACATAAATTCTTCCTTGAGATTGAATCAGGAAATGAAAGGCATGGACAATCTAGCTGCTCAGCTGTATCCTTTCTATTTCATGCCTAGTAGACCATT
TTAA
mRNA sequenceShow/hide mRNA sequence
AAGGAGACAAATGGAATACTTTATGATCGATTTTCATTATAATTCACTAATTTCCTAAACGAGGCGTAGGTCGGAAAACATCGAGAAATGGAGCAATCCCCATCGGATTC
TTCGTCGAGCATCGAAGCCGGACGTCAGATTCCGGCGACATCTCCAAATTCGGCCATTCCCGAGACGCCCACTTGTTCTGTTCTTGAGGACTGCACCAGACCCAGATCTT
CGTTGAGCCATACCGAGATTTTCAAAGCCATTGATGTCGTCGAGAAGGACTCTCTCGCCATTGCCGAGAGCTTTACCTCTCTCTTCGCTTCCCTGCGTTCGACTCTCTCC
GAGGTCACCAGCAACTCTATTGATCATATGCATTGCTTCAACGATGCTGCAGGCCGCCTTCAAGAATCTGTGCTTGATGCGGCAACAAAGGGTAATCGATACATAAATTC
TTCCTTGAGATTGAATCAGGAAATGAAAGGCATGGACAATCTAGCTGCTCAGCTGTATCCTTTCTATTTCATGCCTAGTAGACCATTTTAA
Protein sequenceShow/hide protein sequence
MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGRLQESVLDAAT
KGNRYINSSLRLNQEMKGMDNLAAQLYPFYFMPSRPF