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Carg22207 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22207
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionnuclear transcription factor Y subunit C-4-like
Genome locationCarg_Chr16:3359685..3360077
RNA-Seq ExpressionCarg22207
SyntenyCarg22207
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577185.1 hypothetical protein SDJN03_24759, partial [Cucurbita argyrosperma subsp. sororia]5.1e-63100Show/hide
Query:  MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHET
        MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHET
Subjt:  MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHET

Query:  TTAASASAAAELPESETMSIPVEMSPFLQS
        TTAASASAAAELPESETMSIPVEMSPFLQS
Subjt:  TTAASASAAAELPESETMSIPVEMSPFLQS

XP_022931515.1 nuclear transcription factor Y subunit C-4-like [Cucurbita moschata]5.1e-63100Show/hide
Query:  MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHET
        MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHET
Subjt:  MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHET

Query:  TTAASASAAAELPESETMSIPVEMSPFLQS
        TTAASASAAAELPESETMSIPVEMSPFLQS
Subjt:  TTAASASAAAELPESETMSIPVEMSPFLQS

XP_022985461.1 nuclear transcription factor Y subunit C-4-like [Cucurbita maxima]3.4e-5993.94Show/hide
Query:  MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHET
        MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELF+EELTKRSWMIAM SKKRMLHKEDVASAILATDIFDFLIGLIFHET
Subjt:  MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHET

Query:  TTAASASAAA--ELPESETMSIPVEMSPFLQS
        TTAASASA+A  +LPESETMSIP+EM PFLQS
Subjt:  TTAASASAAA--ELPESETMSIPVEMSPFLQS

XP_023552994.1 nuclear transcription factor Y subunit C-4-like [Cucurbita pepo subsp. pepo]3.8e-5894.62Show/hide
Query:  MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHET
        MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELF+EELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHET
Subjt:  MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHET

Query:  TTAASASAAAELPESETMSIPVEMSPFLQS
        TT A ASAA +L ESETMSIPVEM PFLQS
Subjt:  TTAASASAAAELPESETMSIPVEMSPFLQS

XP_038877432.1 nuclear transcription factor Y subunit C-1-like [Benincasa hispida]6.4e-5087.7Show/hide
Query:  MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHET
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELF+EELTKRSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIF+ET
Subjt:  MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHET

Query:  TTA-ASASAAAELPESETMSIP
         TA A+A+A  +L ESE MSIP
Subjt:  TTA-ASASAAAELPESETMSIP

TrEMBL top hitse value%identityAlignment
A0A0A0KZN6 CBFD_NFYB_HMF domain-containing protein5.0e-4885.83Show/hide
Query:  MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHET
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELF+EELTKRSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIF+ET
Subjt:  MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHET

Query:  TTAASASAAAELPESETMSI
         T A   A  +L ESET+S+
Subjt:  TTAASASAAAELPESETMSI

A0A5A7TSI3 Nuclear transcription factor Y subunit C-1-like1.2e-4683.33Show/hide
Query:  MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHET
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELF+EELTKRSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIF+ET
Subjt:  MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHET

Query:  TTAASASAAAELPESETMSI
             A+ A ++ ESE +S+
Subjt:  TTAASASAAAELPESETMSI

A0A6J1C6K6 nuclear transcription factor Y subunit C-1-like8.5e-4880.8Show/hide
Query:  MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHET
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGEDVKMIS EAPIVFSKACELF+EELT+RSWM+AMQSKKRMLHKEDVASAILATD+FDFLIGLIFHE 
Subjt:  MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHET

Query:  TTAASASAAAELPESETMSIPVEMS
               +A E+ +  T+S+P+EMS
Subjt:  TTAASASAAAELPESETMSIPVEMS

A0A6J1EZM2 nuclear transcription factor Y subunit C-4-like2.5e-63100Show/hide
Query:  MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHET
        MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHET
Subjt:  MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHET

Query:  TTAASASAAAELPESETMSIPVEMSPFLQS
        TTAASASAAAELPESETMSIPVEMSPFLQS
Subjt:  TTAASASAAAELPESETMSIPVEMSPFLQS

A0A6J1J883 nuclear transcription factor Y subunit C-4-like1.7e-5993.94Show/hide
Query:  MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHET
        MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELF+EELTKRSWMIAM SKKRMLHKEDVASAILATDIFDFLIGLIFHET
Subjt:  MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHET

Query:  TTAASASAAA--ELPESETMSIPVEMSPFLQS
        TTAASASA+A  +LPESETMSIP+EM PFLQS
Subjt:  TTAASASAAA--ELPESETMSIPVEMSPFLQS

SwissProt top hitse value%identityAlignment
A6BLW4 Nuclear transcription factor Y subunit C-22.2e-2158.24Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASA
        H LPLARIKKIM K+ EDV+MISAEAP++F+KACELF+ ELT RSW+ A ++K+R L + DVA+AI  TD+FDFL+ ++  E       SA
Subjt:  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASA

Q655V5 Nuclear transcription factor Y subunit C-42.9e-2162.03Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLI
        HSLPLARIKKIM K+ EDV+MISAEAP++F+KACE+F+ ELT RSWM   ++K+R L K D+A+AI  TD++DFL+ ++
Subjt:  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLI

Q8L4B2 Nuclear transcription factor Y subunit C-95.0e-2160.98Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHE
        HSLPLARIKKIM K+ EDV+MISAEAP+VF++ACE+F+ ELT RSW    ++K+R L K D+A+A+  TDIFDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHE

Q9FMV5 Nuclear transcription factor Y subunit C-41.3e-2151.72Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLI----FHETTTAASASAAAELP
        H LPLARIKKIM K+ EDV+MISAEAPI+F+KACELF+ ELT RSW+ A ++K+R L K D+A+AI  TDIFDFL+ ++      E   AASA     + 
Subjt:  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLI----FHETTTAASASAAAELP

Query:  ESETMSIPVEMSPFLQ
              +P    P  Q
Subjt:  ESETMSIPVEMSPFLQ

Q9SMP0 Nuclear transcription factor Y subunit C-11.3e-2165.82Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLI
        H LPLARIKKIM K+ EDV+MISAEAPI+F+KACELF+ ELT RSW+ A ++K+R L K D+A+AI  TDIFDFL+ ++
Subjt:  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLI

Arabidopsis top hitse value%identityAlignment
AT1G08970.1 nuclear factor Y, subunit C93.6e-2260.98Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHE
        HSLPLARIKKIM K+ EDV+MISAEAP+VF++ACE+F+ ELT RSW    ++K+R L K D+A+A+  TDIFDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHE

AT1G08970.4 nuclear factor Y, subunit C93.6e-2260.98Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHE
        HSLPLARIKKIM K+ EDV+MISAEAP+VF++ACE+F+ ELT RSW    ++K+R L K D+A+A+  TDIFDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHE

AT3G48590.1 nuclear factor Y, subunit C19.3e-2365.82Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLI
        H LPLARIKKIM K+ EDV+MISAEAPI+F+KACELF+ ELT RSW+ A ++K+R L K D+A+AI  TDIFDFL+ ++
Subjt:  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLI

AT5G63470.1 nuclear factor Y, subunit C49.3e-2351.72Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLI----FHETTTAASASAAAELP
        H LPLARIKKIM K+ EDV+MISAEAPI+F+KACELF+ ELT RSW+ A ++K+R L K D+A+AI  TDIFDFL+ ++      E   AASA     + 
Subjt:  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLI----FHETTTAASASAAAELP

Query:  ESETMSIPVEMSPFLQ
              +P    P  Q
Subjt:  ESETMSIPVEMSPFLQ

AT5G63470.2 nuclear factor Y, subunit C49.3e-2351.72Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLI----FHETTTAASASAAAELP
        H LPLARIKKIM K+ EDV+MISAEAPI+F+KACELF+ ELT RSW+ A ++K+R L K D+A+AI  TDIFDFL+ ++      E   AASA     + 
Subjt:  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLI----FHETTTAASASAAAELP

Query:  ESETMSIPVEMSPFLQ
              +P    P  Q
Subjt:  ESETMSIPVEMSPFLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCAAGCAGGAGCATATTCCGGCGTGACGTACTGGAAAACAGGGCCGCACTCGCTGCCGTTAGCGAGAATCAAGAAGATCATGAAGAAATCCGGCGAGGATGTGAA
GATGATCTCCGCCGAGGCGCCGATCGTCTTCTCGAAAGCGTGTGAACTGTTCGTCGAAGAATTGACGAAGAGATCGTGGATGATTGCGATGCAGAGCAAGAAGAGGATGC
TTCACAAAGAGGATGTCGCTTCCGCCATTTTGGCTACAGATATTTTCGATTTTCTAATCGGATTGATCTTCCATGAAACCACCACCGCCGCTTCCGCTTCCGCCGCCGCC
GAGCTTCCTGAAAGTGAAACTATGTCCATTCCCGTGGAGATGAGCCCGTTCTTGCAGTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGCAAGCAGGAGCATATTCCGGCGTGACGTACTGGAAAACAGGGCCGCACTCGCTGCCGTTAGCGAGAATCAAGAAGATCATGAAGAAATCCGGCGAGGATGTGAA
GATGATCTCCGCCGAGGCGCCGATCGTCTTCTCGAAAGCGTGTGAACTGTTCGTCGAAGAATTGACGAAGAGATCGTGGATGATTGCGATGCAGAGCAAGAAGAGGATGC
TTCACAAAGAGGATGTCGCTTCCGCCATTTTGGCTACAGATATTTTCGATTTTCTAATCGGATTGATCTTCCATGAAACCACCACCGCCGCTTCCGCTTCCGCCGCCGCC
GAGCTTCCTGAAAGTGAAACTATGTCCATTCCCGTGGAGATGAGCCCGTTCTTGCAGTCCTGA
Protein sequenceShow/hide protein sequence
MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAA
ELPESETMSIPVEMSPFLQS