; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg22254 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22254
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat superfamily protein
Genome locationCarg_Chr16:3090319..3092110
RNA-Seq ExpressionCarg22254
SyntenyCarg22254
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577138.1 hypothetical protein SDJN03_24712, partial [Cucurbita argyrosperma subsp. sororia]1.7e-3361.85Show/hide
Query:  ARRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEESLPGGIPTGLTFNHFHPHEMEITSRTNDM
        ARRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE                     + +  ND 
Subjt:  ARRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEESLPGGIPTGLTFNHFHPHEMEITSRTNDM

Query:  KPKDFSTNQCQQRKRLKQACAHVFNPVTFTTSSPHRLVPSLLTQTCNLSNQSRSMDTSITSPDTSQTFSLVKM
                   + +RL            F  S P         +TCNLSNQSRSMDTSITSPDTSQTFSLVKM
Subjt:  KPKDFSTNQCQQRKRLKQACAHVFNPVTFTTSSPHRLVPSLLTQTCNLSNQSRSMDTSITSPDTSQTFSLVKM

KAG7015137.1 hypothetical protein SDJN02_22770, partial [Cucurbita argyrosperma subsp. argyrosperma]4.3e-98100Show/hide
Query:  MSSKLSSYIIVSSARRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEESLPGGIPTGLTFNHFH
        MSSKLSSYIIVSSARRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEESLPGGIPTGLTFNHFH
Subjt:  MSSKLSSYIIVSSARRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEESLPGGIPTGLTFNHFH

Query:  PHEMEITSRTNDMKPKDFSTNQCQQRKRLKQACAHVFNPVTFTTSSPHRLVPSLLTQTCNLSNQSRSMDTSITSPDTSQTFSLVKMFNQSLLGACT
        PHEMEITSRTNDMKPKDFSTNQCQQRKRLKQACAHVFNPVTFTTSSPHRLVPSLLTQTCNLSNQSRSMDTSITSPDTSQTFSLVKMFNQSLLGACT
Subjt:  PHEMEITSRTNDMKPKDFSTNQCQQRKRLKQACAHVFNPVTFTTSSPHRLVPSLLTQTCNLSNQSRSMDTSITSPDTSQTFSLVKMFNQSLLGACT

XP_022931519.1 uncharacterized protein LOC111437671 isoform X3 [Cucurbita moschata]7.0e-2498.59Show/hide
Query:  ARRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE
        ARRSRIKKVR+GLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE
Subjt:  ARRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE

XP_022985382.1 uncharacterized protein LOC111483407 isoform X1 [Cucurbita maxima]7.0e-2498.59Show/hide
Query:  ARRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE
        ARRSRIKKVR+GLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE
Subjt:  ARRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE

XP_023552095.1 uncharacterized protein LOC111809863 isoform X2 [Cucurbita pepo subsp. pepo]7.0e-2498.59Show/hide
Query:  ARRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE
        ARRSRIKKVR+GLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE
Subjt:  ARRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE

TrEMBL top hitse value%identityAlignment
A0A0A0KZV4 Uncharacterized protein8.1e-2655.13Show/hide
Query:  ARRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEESLPGGIPTGLTFNHFHPHEMEITSRTNDM
        ARRSRIKKVR+GLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE                    ++ +  ND 
Subjt:  ARRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEESLPGGIPTGLTFNHFHPHEMEITSRTNDM

Query:  KPKDFSTNQCQQRKRLKQACAHVFNPVTFTTSSPHRLVPSLLTQTCNLSNQSRSMD
          +  + +   ++  ++    H        +  PH LVP+L TQ   LSN+S S++
Subjt:  KPKDFSTNQCQQRKRLKQACAHVFNPVTFTTSSPHRLVPSLLTQTCNLSNQSRSMD

A0A6J1ETW5 uncharacterized protein LOC111437671 isoform X13.4e-2498.59Show/hide
Query:  ARRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE
        ARRSRIKKVR+GLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE
Subjt:  ARRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE

A0A6J1J4R1 uncharacterized protein LOC111483407 isoform X13.4e-2498.59Show/hide
Query:  ARRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE
        ARRSRIKKVR+GLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE
Subjt:  ARRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE

A0A6J1JB68 uncharacterized protein LOC111483407 isoform X33.4e-2498.59Show/hide
Query:  ARRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE
        ARRSRIKKVR+GLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE
Subjt:  ARRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE

A0A6J1JDG3 uncharacterized protein LOC111483407 isoform X23.4e-2498.59Show/hide
Query:  ARRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE
        ARRSRIKKVR+GLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE
Subjt:  ARRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G64430.1 Pentatricopeptide repeat (PPR) superfamily protein6.5e-2071.43Show/hide
Query:  RRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE
        RR+R+KKVR+ LENS+K +I+LI+SYARISSMIEIEVEM+SDV+AAEA ++ E +++QIEQIM LENLEE
Subjt:  RRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE

AT1G64430.2 Pentatricopeptide repeat (PPR) superfamily protein6.5e-2071.43Show/hide
Query:  RRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE
        RR+R+KKVR+ LENS+K +I+LI+SYARISSMIEIEVEM+SDV+AAEA ++ E +++QIEQIM LENLEE
Subjt:  RRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTCCAAACTCAGTTCTTACATTATTGTCTCCAGTGCACGTAGAAGTAGGATAAAAAAGGTGCGAGACGGCTTGGAAAATTCCCTTAAGCAACGGATTGAACTAAT
AGAAAGCTATGCAAGGATTTCCTCAATGATTGAGATAGAAGTTGAAATGGAGTCTGATGTTATAGCTGCTGAAGCAGCCAGCAGTGTGGAAAGGGTTTCTGAACAGATTG
AGCAAATCATGGTGCTGGAAAATCTAGAAGAGAGTTTGCCAGGTGGTATACCCACTGGACTTACCTTCAATCACTTCCATCCACACGAGATGGAGATTACAAGCAGAACC
AACGATATGAAGCCGAAAGACTTTTCAACCAATCAATGCCAACAGAGGAAGAGGTTAAAACAGGCTTGTGCTCATGTTTTCAATCCAGTAACATTTACTACCTCTTCTCC
ACATCGCCTTGTACCTTCACTTCTTACCCAGACTTGCAATTTGTCAAACCAATCTAGGAGTATGGACACCTCCATCACGAGTCCAGATACTTCCCAAACCTTCTCGCTTG
TGAAAATGTTCAATCAATCTCTACTTGGTGCATGTACATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCTCCAAACTCAGTTCTTACATTATTGTCTCCAGTGCACGTAGAAGTAGGATAAAAAAGGTGCGAGACGGCTTGGAAAATTCCCTTAAGCAACGGATTGAACTAAT
AGAAAGCTATGCAAGGATTTCCTCAATGATTGAGATAGAAGTTGAAATGGAGTCTGATGTTATAGCTGCTGAAGCAGCCAGCAGTGTGGAAAGGGTTTCTGAACAGATTG
AGCAAATCATGGTGCTGGAAAATCTAGAAGAGAGTTTGCCAGGTGGTATACCCACTGGACTTACCTTCAATCACTTCCATCCACACGAGATGGAGATTACAAGCAGAACC
AACGATATGAAGCCGAAAGACTTTTCAACCAATCAATGCCAACAGAGGAAGAGGTTAAAACAGGCTTGTGCTCATGTTTTCAATCCAGTAACATTTACTACCTCTTCTCC
ACATCGCCTTGTACCTTCACTTCTTACCCAGACTTGCAATTTGTCAAACCAATCTAGGAGTATGGACACCTCCATCACGAGTCCAGATACTTCCCAAACCTTCTCGCTTG
TGAAAATGTTCAATCAATCTCTACTTGGTGCATGTACATGA
Protein sequenceShow/hide protein sequence
MSSKLSSYIIVSSARRSRIKKVRDGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEESLPGGIPTGLTFNHFHPHEMEITSRT
NDMKPKDFSTNQCQQRKRLKQACAHVFNPVTFTTSSPHRLVPSLLTQTCNLSNQSRSMDTSITSPDTSQTFSLVKMFNQSLLGACT