; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg22257 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22257
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTHO complex subunit 4D-like
Genome locationCarg_Chr14:4249605..4255397
RNA-Seq ExpressionCarg22257
SyntenyCarg22257
Gene Ontology termsGO:0006406 - mRNA export from nucleus (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR025715 - Chromatin target of PRMT1 protein, C-terminal
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581189.1 THO complex subunit 4C, partial [Cucurbita argyrosperma subsp. sororia]8.8e-11195.02Show/hide
Query:  MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE
        MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE
Subjt:  MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE

Query:  MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWS--------RGLGGGGGRGLGGGGRGRGR----
        MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWS        RGLGGGGGRGLGGGGRGRGR    
Subjt:  MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWS--------RGLGGGGGRGLGGGGRGRGR----

Query:  GSGSGSGSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT
        GSGSGSGSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT
Subjt:  GSGSGSGSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT

KAG7017929.1 THO complex subunit 4D [Cucurbita argyrosperma subsp. argyrosperma]1.0e-114100Show/hide
Query:  MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE
        MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE
Subjt:  MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE

Query:  MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGSGSGRGR
        MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGSGSGRGR
Subjt:  MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGSGSGRGR

Query:  GQGRKKPVEKSSAELDKELENYHAEAMQT
        GQGRKKPVEKSSAELDKELENYHAEAMQT
Subjt:  GQGRKKPVEKSSAELDKELENYHAEAMQT

XP_022935328.1 THO complex subunit 4D-like [Cucurbita moschata]5.2e-11197.82Show/hide
Query:  MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE
        MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE
Subjt:  MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE

Query:  MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGSGSGRGR
        MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSS+AVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGR    GSGSGRGR
Subjt:  MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGSGSGRGR

Query:  GQGRKKPVEKSSAELDKELENYHAEAMQT
        GQGRKKPVEKSSAELDKELENYHAEAMQT
Subjt:  GQGRKKPVEKSSAELDKELENYHAEAMQT

XP_022982649.1 THO complex subunit 4D-like [Cucurbita maxima]4.4e-11095.78Show/hide
Query:  MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE
        MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE
Subjt:  MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE

Query:  MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGG--------GRGRGRGSGS
        MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRS  GRGRGRGGWSRGLGGGGGRGLGGG        GRGRGRGSGS
Subjt:  MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGG--------GRGRGRGSGS

Query:  GSGSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT
        GSGSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT
Subjt:  GSGSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT

XP_023527122.1 THO complex subunit 4D [Cucurbita pepo subsp. pepo]1.4e-11198.25Show/hide
Query:  MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE
        MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE
Subjt:  MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE

Query:  MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGSGSGRGR
        MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGR    GSGSGRGR
Subjt:  MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGSGSGRGR

Query:  GQGRKKPVEKSSAELDKELENYHAEAMQT
        GQGRKKPVEKSSAELDKELENYHAEAMQT
Subjt:  GQGRKKPVEKSSAELDKELENYHAEAMQT

TrEMBL top hitse value%identityAlignment
A0A067EIQ9 RRM domain-containing protein1.9e-7472.37Show/hide
Query:  KNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEM
        +N  WQHDLFEDSLRA+GISGIE+GTKLYVSNL  GVT +DIRELFSEIG+LKR+AIH+DKNGRPSGSAEVVY RRSDAFAALKRYNNVLLDGKPMKIE+
Subjt:  KNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEM

Query:  LGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGL-RSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGSGSGRGR
        +G NA+ P+ AR+NVTGVNGR +RTVV+TS SG  G + A+N  PG   RGGL RS +GRGRG+ G  RG G GGG   GGGGRGRGR        GRGR
Subjt:  LGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGL-RSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGSGSGRGR

Query:  GQGRKKPVEKSSAELDKELENYHAEAMQ
        GQG+K PV+KS+ +LDKEL+NYHAEAMQ
Subjt:  GQGRKKPVEKSSAELDKELENYHAEAMQ

A0A1S3C452 THO complex subunit 4D1.8e-9385.59Show/hide
Query:  MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE
        MKNVQWQHDLFEDSLRASGISGI+IGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE
Subjt:  MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE

Query:  MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGSGSGRGR
        MLGDNA+ PVSARINVTG NGR+RRTVVLT ESGR  + N VNPFPGPSHRGGLR+   RGRGRG W+RG+G GG     GGGRGRGR        GRGR
Subjt:  MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGSGSGRGR

Query:  GQGRKKPVEKSSAELDKELENYHAEAMQT
        GQGRKKPVEKSS ELDKELENYHAEAMQT
Subjt:  GQGRKKPVEKSSAELDKELENYHAEAMQT

A0A6J1CP51 THO complex subunit 4D-like1.3e-9185.15Show/hide
Query:  MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE
        MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE
Subjt:  MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE

Query:  MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGSGSGRGR
        +LGDNA+ PVSARINVTG+NGRSRRTVVLTSESGRT SS  VN FPGPS+RG L   RGRGRGRGGWSR      G+G  GGGRGRGR        GRGR
Subjt:  MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGSGSGRGR

Query:  GQGRKKPVEKSSAELDKELENYHAEAMQT
        G GRKK VEKSS ELDK+LENYHAEAMQT
Subjt:  GQGRKKPVEKSSAELDKELENYHAEAMQT

A0A6J1FAB9 THO complex subunit 4D-like2.5e-11197.82Show/hide
Query:  MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE
        MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE
Subjt:  MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE

Query:  MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGSGSGRGR
        MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSS+AVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGR    GSGSGRGR
Subjt:  MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGSGSGRGR

Query:  GQGRKKPVEKSSAELDKELENYHAEAMQT
        GQGRKKPVEKSSAELDKELENYHAEAMQT
Subjt:  GQGRKKPVEKSSAELDKELENYHAEAMQT

A0A6J1J564 THO complex subunit 4D-like2.1e-11095.78Show/hide
Query:  MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE
        MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE
Subjt:  MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE

Query:  MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGG--------GRGRGRGSGS
        MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRS  GRGRGRGGWSRGLGGGGGRGLGGG        GRGRGRGSGS
Subjt:  MLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGG--------GRGRGRGSGS

Query:  GSGSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT
        GSGSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT
Subjt:  GSGSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT

SwissProt top hitse value%identityAlignment
O08583 THO complex subunit 47.7e-2538.64Show/hide
Query:  QWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGD
        +WQHDLF+      G +G+E G KL VSNLD+GV+  DI+ELF+E G LK+ A+HYD++GR  G+A+V + R++DA  A+K+YN V LDG+PM I+++  
Subjt:  QWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGD

Query:  NADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGSGSGRGRGQGR
          DT               RR             + ++N       RGG+   RG G                G GGGG  RG   GS    GRGRG GR
Subjt:  NADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGSGSGRGRGQGR

Query:  KKPVEKSSAELDKELENYHA
            + S+ ELD +L+ Y+A
Subjt:  KKPVEKSSAELDKELENYHA

Q6NQ72 THO complex subunit 4D4.6e-5459Show/hide
Query:  MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE
        ++++ WQ  LFED LRA+G SG+E+GT+L+V+NLD GVT EDIRELFSEIG+++R+AIHYDKNGRPSG+AEVVY RRSDAF ALK+YNNVLLDG+PM++E
Subjt:  MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE

Query:  MLGDN--ADTPVSAR--INVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGW-SRGL-----GGGGGRGLGGGGRGRGRGS
        +LG N  ++ P+S R  +NVTG+NGR +RTVV+                 G   RG +R GRG GRG     SR L      GGG RG  GG R RGRG+
Subjt:  MLGDN--ADTPVSAR--INVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGW-SRGL-----GGGGGRGLGGGGRGRGRGS

Query:  GSGSGSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT
        G G G G GRG G KKPVEKS+A+LDK+LE+YHA+AM T
Subjt:  GSGSGSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT

Q8L719 THO complex subunit 4B5.0e-3248.13Show/hide
Query:  NVQWQHDLF--EDSLRAS----------GISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNV
        +  WQ+D+F  + S+ A+          G S IE GTKLY+SNLDYGV+ EDI+ELFSE+GDLKR+ IHYD++GR  G+AEVV++RR DA AA+KRYNNV
Subjt:  NVQWQHDLF--EDSLRAS----------GISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNV

Query:  LLDGKPMKIEMLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGW-SRGLGGGGGRGLGGGGRG-RGR
         LDGK MKIE++G N   P    +    +             +G  G+ N    F G  +  G  +G  RGRGRGG+  R  GGG G G   GGRG RGR
Subjt:  LLDGKPMKIEMLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGW-SRGLGGGGGRGLGGGGRG-RGR

Query:  GSGSGSGSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT
        G G GSG GRGR +        S+ +LD EL+ YH EAM+T
Subjt:  GSGSGSGSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT

Q8L773 THO complex subunit 4A5.3e-3445.85Show/hide
Query:  WQHDLF----EDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEM
        W HD+F    ED       +GIE GTKLY+SNLDYGV  EDI+ELF+E+G+LKR+ +H+D++GR  G+AEVVY+RR DA AA+K+YN+V LDGKPMKIE+
Subjt:  WQHDLF----EDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEM

Query:  LGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGSGSGRGRG
        +G N  T                      + SGR  + N+     G   RG        G+GRGG  RG GG GG G GGGGRGR  G G          
Subjt:  LGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGSGSGRGRG

Query:  QGRKKPVEKSSAE-LDKELENYHAEAMQT
             P EK SAE LD +L+ YH+  M+T
Subjt:  QGRKKPVEKSSAE-LDKELENYHAEAMQT

Q94EH8 THO complex subunit 4C5.1e-5359.03Show/hide
Query:  QWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGD
        Q Q+DL+E++LRA G+SG+E+GT +Y++NLD GVT EDIREL++EIG+LKR+AIHYDKNGRPSGSAEVVY RRSDA  A+++YNNVLLDG+PMK+E+LG 
Subjt:  QWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGD

Query:  NADT-PVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGL---GGGGGRGLGGGGRGRGRGSGSGSGSGRGR
        N ++ PV+AR+NVTG+NGR +R+V                 F G   RGG R GRGRG G  G    L     GG     GG RGRGRG+G G G+  G 
Subjt:  NADT-PVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGL---GGGGGRGLGGGGRGRGRGSGSGSGSGRGR

Query:  GQGRKKPVEKSSAELDKELENYHAEAM
        G+G KKPVEKS+A+LDK+LE+YHAEAM
Subjt:  GQGRKKPVEKSSAELDKELENYHAEAM

Arabidopsis top hitse value%identityAlignment
AT1G66260.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.6e-5459.03Show/hide
Query:  QWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGD
        Q Q+DL+E++LRA G+SG+E+GT +Y++NLD GVT EDIREL++EIG+LKR+AIHYDKNGRPSGSAEVVY RRSDA  A+++YNNVLLDG+PMK+E+LG 
Subjt:  QWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGD

Query:  NADT-PVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGL---GGGGGRGLGGGGRGRGRGSGSGSGSGRGR
        N ++ PV+AR+NVTG+NGR +R+V                 F G   RGG R GRGRG G  G    L     GG     GG RGRGRG+G G G+  G 
Subjt:  NADT-PVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGL---GGGGGRGLGGGGRGRGRGSGSGSGSGRGR

Query:  GQGRKKPVEKSSAELDKELENYHAEAM
        G+G KKPVEKS+A+LDK+LE+YHAEAM
Subjt:  GQGRKKPVEKSSAELDKELENYHAEAM

AT1G66260.2 RNA-binding (RRM/RBD/RNP motifs) family protein3.6e-5459.03Show/hide
Query:  QWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGD
        Q Q+DL+E++LRA G+SG+E+GT +Y++NLD GVT EDIREL++EIG+LKR+AIHYDKNGRPSGSAEVVY RRSDA  A+++YNNVLLDG+PMK+E+LG 
Subjt:  QWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGD

Query:  NADT-PVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGL---GGGGGRGLGGGGRGRGRGSGSGSGSGRGR
        N ++ PV+AR+NVTG+NGR +R+V                 F G   RGG R GRGRG G  G    L     GG     GG RGRGRG+G G G+  G 
Subjt:  NADT-PVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGL---GGGGGRGLGGGGRGRGRGSGSGSGSGRGR

Query:  GQGRKKPVEKSSAELDKELENYHAEAM
        G+G KKPVEKS+A+LDK+LE+YHAEAM
Subjt:  GQGRKKPVEKSSAELDKELENYHAEAM

AT5G37720.1 ALWAYS EARLY 43.3e-5559Show/hide
Query:  MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE
        ++++ WQ  LFED LRA+G SG+E+GT+L+V+NLD GVT EDIRELFSEIG+++R+AIHYDKNGRPSG+AEVVY RRSDAF ALK+YNNVLLDG+PM++E
Subjt:  MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE

Query:  MLGDN--ADTPVSAR--INVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGW-SRGL-----GGGGGRGLGGGGRGRGRGS
        +LG N  ++ P+S R  +NVTG+NGR +RTVV+                 G   RG +R GRG GRG     SR L      GGG RG  GG R RGRG+
Subjt:  MLGDN--ADTPVSAR--INVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGW-SRGL-----GGGGGRGLGGGGRGRGRGS

Query:  GSGSGSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT
        G G G G GRG G KKPVEKS+A+LDK+LE+YHA+AM T
Subjt:  GSGSGSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT

AT5G37720.2 ALWAYS EARLY 44.6e-5757.08Show/hide
Query:  MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE
        ++++ WQ  LFED LRA+G SG+E+GT+L+V+NLD GVT EDIRELFSEIG+++R+AIHYDKNGRPSG+AEVVY RRSDAF ALK+YNNVLLDG+PM++E
Subjt:  MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE

Query:  MLGDN--ADTPVSAR--INVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGSGS
        +LG N  ++ P+S R  +NVTG+NGR +RTVV+    GR G      P P  S R  + + +G     GG   G GG   RG G GGRGRG G G+G   
Subjt:  MLGDN--ADTPVSAR--INVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGSGS

Query:  GRGRGQGRKKPVEKSSAELDKELENYHAEAMQT
                KKPVEKS+A+LDK+LE+YHA+AM T
Subjt:  GRGRGQGRKKPVEKSSAELDKELENYHAEAMQT

AT5G59950.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.8e-3545.85Show/hide
Query:  WQHDLF----EDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEM
        W HD+F    ED       +GIE GTKLY+SNLDYGV  EDI+ELF+E+G+LKR+ +H+D++GR  G+AEVVY+RR DA AA+K+YN+V LDGKPMKIE+
Subjt:  WQHDLF----EDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEM

Query:  LGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGSGSGRGRG
        +G N  T                      + SGR  + N+     G   RG        G+GRGG  RG GG GG G GGGGRGR  G G          
Subjt:  LGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGSGSGRGRG

Query:  QGRKKPVEKSSAE-LDKELENYHAEAMQT
             P EK SAE LD +L+ YH+  M+T
Subjt:  QGRKKPVEKSSAE-LDKELENYHAEAMQT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAATGTTCAGTGGCAGCATGATTTATTTGAAGACAGTCTTAGAGCTTCAGGGATTTCTGGAATTGAAATTGGCACAAAGTTGTACGTTTCTAACTTGGATTATGG
GGTGACCAAAGAAGATATAAGGGAGTTGTTCTCTGAGATTGGAGACCTGAAAAGATTTGCAATTCATTATGACAAAAATGGCCGTCCAAGTGGCTCAGCCGAGGTGGTAT
ATACTCGCAGAAGTGATGCATTTGCTGCTCTAAAGCGCTACAACAATGTGTTACTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGAGATAATGCTGACACGCCAGTT
TCTGCACGCATAAACGTTACTGGAGTGAATGGAAGAAGCAGGAGAACCGTTGTTCTAACGTCTGAATCTGGTCGTACTGGTAGCTCCAACGCGGTCAACCCTTTTCCTGG
TCCAAGCCATCGTGGAGGGCTGAGGAGTGGTCGCGGTCGTGGTCGTGGGCGAGGGGGCTGGAGCCGTGGTCTAGGAGGTGGAGGAGGCCGTGGTCTAGGAGGTGGAGGCC
GTGGCCGAGGGCGTGGTAGTGGTAGTGGTAGTGGTAGTGGTCGTGGCCGTGGCCAAGGAAGAAAGAAACCTGTGGAGAAGTCCTCCGCTGAACTCGACAAGGAGCTTGAA
AACTACCATGCTGAAGCGATGCAAACCTGA
mRNA sequenceShow/hide mRNA sequence
AATTGTAAAATCCAAGGGAAGAACAAAAGGTTTATTGAAGAAAATATCGTCTTCTTAGTCCCGAAGGAAAGTGTCTCTCAGGCCGCCGCCGCAGCCGCCGCCTCTTGCCA
GAAGAATCTCAGTTTCTTTCTAAAACGCCCTATAAATCCCACACGCACGGTGTCGCCTTCCGACGTCATCTCCTCAGAATCCTCTATTTGACGTTGAAATTCTTATCTCT
TCGCTCTCTCTCGCTCTCTCGTAAGTCCTTCGACTGTTTTTAGGACTTCTTTTCTGTAGTTCTTCGAAATCTGTTTCCTCTTATCGAACCGGATGGCTACTCCTTTGGAT
ATGTCCCTAGAGGATGTGATAAAGAAGAATAACCGTGAGAAGCTTAGAGCACGAGGTAGGGCTCGTCGTGGGCGTGGTGCAGGTGGGTCTTATAATGGGGGAAAAGCAGT
AGTGATAGGGTCAGTTCGTAGAGGTCCGCTCGGCATAAATGCAAGGCCATCTGCTTTCTCAATTAGCAAGGCAAGCTTCAAACTGTGATGTTTAATGCATATGCTTGAGA
ACCTGATATTCCTTGAAATACATGCTCATGAGGATCTCAAATAACACTATAGTAACTCTAACAGAAGAGGATCAGTAAAATTGTTGTTCTATGGAGAATCTCATCGTGGG
TCACCCTCTGATCCGATTCGTCTCCTGGTGTATTTGTACCATTATCTTTGCAAATATTGAATACGTGTGGGTTATCTGGGTTATTTTCAAAGGACTTTCAAGAGTGGAGA
ATTATATTCTTGTCAATTTATAAGCTGATATGTGTTTTCTCCGTCTGGATTCTTATCTGCATGCTTTCATCAGCCCCCACGCAGAATGAAGAATGTTCAGTGGCAGCATG
ATTTATTTGAAGACAGTCTTAGAGCTTCAGGGATTTCTGGAATTGAAATTGGCACAAAGTTGTACGTTTCTAACTTGGATTATGGGGTGACCAAAGAAGATATAAGGGAG
TTGTTCTCTGAGATTGGAGACCTGAAAAGATTTGCAATTCATTATGACAAAAATGGCCGTCCAAGTGGCTCAGCCGAGGTGGTATATACTCGCAGAAGTGATGCATTTGC
TGCTCTAAAGCGCTACAACAATGTGTTACTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGAGATAATGCTGACACGCCAGTTTCTGCACGCATAAACGTTACTGGAG
TGAATGGAAGAAGCAGGAGAACCGTTGTTCTAACGTCTGAATCTGGTCGTACTGGTAGCTCCAACGCGGTCAACCCTTTTCCTGGTCCAAGCCATCGTGGAGGGCTGAGG
AGTGGTCGCGGTCGTGGTCGTGGGCGAGGGGGCTGGAGCCGTGGTCTAGGAGGTGGAGGAGGCCGTGGTCTAGGAGGTGGAGGCCGTGGCCGAGGGCGTGGTAGTGGTAG
TGGTAGTGGTAGTGGTCGTGGCCGTGGCCAAGGAAGAAAGAAACCTGTGGAGAAGTCCTCCGCTGAACTCGACAAGGAGCTTGAAAACTACCATGCTGAAGCGATGCAAA
CCTGACCTGATTAACCACTTGTGTTAGCTGTAAGATAGAAGAATGTATGTCACACTCTCGTGGGGTGTGTGCTTATTTGGTTATCATTAGTTATTTCCATGCTTACTTTT
TGCTCTTCAGTAGTAGACTAGATTGTATTTTTCCTATTTAATGGAGGAGATGATGCTGTTTGACCCTTCCTTATCAAAACCTCTACCTCTTCGGTTGATCATGAACGAAC
CGAGCTTGGGGTTCATCGATCTCTCAAATAGGTGAATTGCTTTATGTATAAAGGAGATTTCGAGTTTAGTTGTTGCTATACATCGTTGAGAATGTAGTATCTTTTATTTT
AGGGACCTATTGTTCAGCTCCTTGGTCCTTTGATTTGATTTGATTTGATTTGATTTCTTAATCTTAATATCAGATTTTCATTACTTTTCTTGGAAAAACATACTCAATTC
AAATGCAACTGTGATAATTGCTCCAGTAGAGTACACAGAAGAAAGAACAAAAAGAATCCACAATCAAACCAAAAGAATGCACATCAACCACAATTGAATGAATGTTCTTG
ACACAAGAGGACATCACTTCCTTTCTCTTCTCATCTGTGTAATTGTTATTTACGCTTTGGGCAATCTGCCCAATTGTAAATCATGACTATTTTACATTGTAAAAAGGTTC
ACAAACACGAACAAGATGTATCCTATCCTTACACTCAAAATAACAGATGGGATATCTAATCTCAAAATCATTTAAACCATGAATGGAGTGTTTATGTTATTGAGATTGAG
GGGGAGCTTCATCTGCTGCTGTTGCTGCTGTTGCTGCTTCTTTTCTAAGACG
Protein sequenceShow/hide protein sequence
MKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNADTPV
SARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGSGSGRGRGQGRKKPVEKSSAELDKELE
NYHAEAMQT