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Carg22307 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22307
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionlipid transfer-like protein VAS
Genome locationCarg_Chr14:3949943..3951957
RNA-Seq ExpressionCarg22307
SyntenyCarg22307
Gene Ontology termsGO:0006869 - lipid transport (biological process)
GO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0031225 - anchored component of membrane (cellular component)
GO:0008289 - lipid binding (molecular function)
InterPro domainsIPR000528 - Plant non-specific lipid-transfer protein/Par allergen
IPR016140 - Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
IPR036312 - Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily
IPR043325 - Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581146.1 Lipid transfer-like protein VAS, partial [Cucurbita argyrosperma subsp. sororia]1.5e-5899.13Show/hide
Query:  MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH
        MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH
Subjt:  MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH

Query:  VNPLSCLAAANNARN
        VNPLSCLAAANNAR+
Subjt:  VNPLSCLAAANNARN

KAG7017881.1 Lipid transfer-like protein VAS, partial [Cucurbita argyrosperma subsp. argyrosperma]5.5e-106100Show/hide
Query:  MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH
        MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH
Subjt:  MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH

Query:  VNPLSCLAAANNARNFLFFLASDPALALHLFHSATDFAYEYRIASHVWNSADSASVLTAATLETTHRRSFLHHVCKLSDLNRPLNLKLPGLSAF
        VNPLSCLAAANNARNFLFFLASDPALALHLFHSATDFAYEYRIASHVWNSADSASVLTAATLETTHRRSFLHHVCKLSDLNRPLNLKLPGLSAF
Subjt:  VNPLSCLAAANNARNFLFFLASDPALALHLFHSATDFAYEYRIASHVWNSADSASVLTAATLETTHRRSFLHHVCKLSDLNRPLNLKLPGLSAF

XP_022935175.1 lipid transfer-like protein VAS [Cucurbita moschata]5.6e-5898.26Show/hide
Query:  MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH
        MEMKPWTG LTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH
Subjt:  MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH

Query:  VNPLSCLAAANNARN
        VNPLSCLAAANNAR+
Subjt:  VNPLSCLAAANNARN

XP_022983266.1 lipid transfer-like protein VAS [Cucurbita maxima]1.1e-5696.52Show/hide
Query:  MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH
        MEMKPWTG LTAMLLVLASAMAFQ RAQDTSCMNRLIPCLNYLNGTRDPP SCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH
Subjt:  MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH

Query:  VNPLSCLAAANNARN
        VNPLSCLAAANNAR+
Subjt:  VNPLSCLAAANNARN

XP_023528269.1 lipid transfer-like protein VAS [Cucurbita pepo subsp. pepo]4.8e-5796.52Show/hide
Query:  MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH
        MEMKPWTG LTA+LLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPP SCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH
Subjt:  MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH

Query:  VNPLSCLAAANNARN
        VNPLSCLAAANNAR+
Subjt:  VNPLSCLAAANNARN

TrEMBL top hitse value%identityAlignment
A0A0A0L9L7 AAI domain-containing protein2.7e-3467.33Show/hide
Query:  MLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAANN
        +LL    ++    +++DTSC+N LIPCLNY+NGTRDPP SCCNPL+S+I+SNP+CLC LISR+GS+RAE AGID+++AQLLP RCGEHVNPLSCLAA N 
Subjt:  MLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAANN

Query:  A
        +
Subjt:  A

A0A5A7U4K4 Lipid transfer-like protein VAS2.0e-3264.36Show/hide
Query:  MLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAANN
        +LL    ++    + + TSC+N L+PCLNY+NGTRDPP SCC+PL+S+I+SNP+CLC LISR+GS+RAE AGID+++AQLLP RCGEHVNPLSCLAA N 
Subjt:  MLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAANN

Query:  A
        +
Subjt:  A

A0A6J1D3G9 lipid transfer-like protein VAS1.2e-3467.26Show/hide
Query:  MKPWT---GILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGE
        MKP T    I TAMLL++    A   + QDT C+NRLIPCL+YLNGTRDPP SCC+PL+ VI+SNPDCLC+LIS +GS+RAEQAGIDV++AQ LPGRCG+
Subjt:  MKPWT---GILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGE

Query:  HVNPLSCLAAANN
        HVNPLSCL+A+++
Subjt:  HVNPLSCLAAANN

A0A6J1F9V7 lipid transfer-like protein VAS2.7e-5898.26Show/hide
Query:  MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH
        MEMKPWTG LTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH
Subjt:  MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH

Query:  VNPLSCLAAANNARN
        VNPLSCLAAANNAR+
Subjt:  VNPLSCLAAANNARN

A0A6J1J1M2 lipid transfer-like protein VAS5.1e-5796.52Show/hide
Query:  MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH
        MEMKPWTG LTAMLLVLASAMAFQ RAQDTSCMNRLIPCLNYLNGTRDPP SCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH
Subjt:  MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH

Query:  VNPLSCLAAANNARN
        VNPLSCLAAANNAR+
Subjt:  VNPLSCLAAANNARN

SwissProt top hitse value%identityAlignment
Q1PFD8 Non-specific lipid transfer protein GPI-anchored 94.2e-0831.43Show/hide
Query:  MEMKPWTGILTAMLLVLA-SAMAFQGRAQDTSCMNRLIPCLNYLNGTR-DPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCG
        ME+  +  ++ A++++ +  A A  G  Q T+C+ +L+PC  Y++     PP SCC P+K +++ +  CLC  I+ +  +  +   +    A LLP  CG
Subjt:  MEMKPWTGILTAMLLVLA-SAMAFQGRAQDTSCMNRLIPCLNYLNGTR-DPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCG

Query:  EHVNP
          VNP
Subjt:  EHVNP

Q6NLF7 Non-specific lipid transfer protein GPI-anchored 78.9e-0628.3Show/hide
Query:  MKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVN
        M  +   +T M L+L   +  Q     T C+++L+PC N LN T  P   CC+ +K  ++    CLC + +  G     Q  +   +A  L  RC    +
Subjt:  MKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVN

Query:  PLSCLA
          +C A
Subjt:  PLSCLA

Q9FFY3 Non-specific lipid transfer protein GPI-anchored 305.7e-2956.07Show/hide
Query:  MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH
        M MK ++  +  +L+  +S M   G  Q  SC+N+L PCLNYLNGT++ P  CCNPLKSVI +NP+CLC +IS   S +AE+AGIDV+ AQ+LP RCGEH
Subjt:  MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH

Query:  VNPLSCL
        VNP++CL
Subjt:  VNPLSCL

Q9LE56 Non-specific lipid transfer protein GPI-anchored 32.3e-0630.23Show/hide
Query:  GRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAA
        G A    C+ +L+PC  YL+    PP++CC PL  ++  +  CLCA+   +  D  +   +    A  LP  CG   +   C  +A
Subjt:  GRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAA

Q9LJ86 Non-specific lipid transfer protein GPI-anchored 59.1e-1138.74Show/hide
Query:  MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLI---PCLNYLNG-TRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQL--LP
        M+M+     LT  + V++S M     +  +SC N LI   PCLNY+ G +  P   CCN L  V+ S+PDCLC +++  GS    Q GI+V+Q Q   LP
Subjt:  MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLI---PCLNYLNG-TRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQL--LP

Query:  GRCGEHVNPLS
          C     P+S
Subjt:  GRCGEHVNPLS

Arabidopsis top hitse value%identityAlignment
AT1G18280.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein1.7e-0730.23Show/hide
Query:  GRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAA
        G A    C+ +L+PC  YL+    PP++CC PL  ++  +  CLCA+   +  D  +   +    A  LP  CG   +   C  +A
Subjt:  GRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAA

AT1G70250.1 receptor serine/threonine kinase, putative1.1e-0831.25Show/hide
Query:  TAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSC
        TAM++        +  AQ T C+++++PC  +LN T  P + CCN +K  ++ +  CLC + +  G     Q  I   QA  L  RCG + +  +C
Subjt:  TAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSC

AT1G73560.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein3.0e-0931.43Show/hide
Query:  MEMKPWTGILTAMLLVLA-SAMAFQGRAQDTSCMNRLIPCLNYLNGTR-DPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCG
        ME+  +  ++ A++++ +  A A  G  Q T+C+ +L+PC  Y++     PP SCC P+K +++ +  CLC  I+ +  +  +   +    A LLP  CG
Subjt:  MEMKPWTGILTAMLLVLA-SAMAFQGRAQDTSCMNRLIPCLNYLNGTR-DPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCG

Query:  EHVNP
          VNP
Subjt:  EHVNP

AT3G22600.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein6.5e-1238.74Show/hide
Query:  MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLI---PCLNYLNG-TRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQL--LP
        M+M+     LT  + V++S M     +  +SC N LI   PCLNY+ G +  P   CCN L  V+ S+PDCLC +++  GS    Q GI+V+Q Q   LP
Subjt:  MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLI---PCLNYLNG-TRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQL--LP

Query:  GRCGEHVNPLS
          C     P+S
Subjt:  GRCGEHVNPLS

AT5G13900.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein4.0e-3056.07Show/hide
Query:  MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH
        M MK ++  +  +L+  +S M   G  Q  SC+N+L PCLNYLNGT++ P  CCNPLKSVI +NP+CLC +IS   S +AE+AGIDV+ AQ+LP RCGEH
Subjt:  MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEH

Query:  VNPLSCL
        VNP++CL
Subjt:  VNPLSCL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGAAGCCTTGGACAGGAATCTTGACGGCAATGCTACTCGTACTGGCTTCCGCCATGGCGTTTCAAGGCCGTGCTCAAGACACTTCCTGCATGAATAGGTTAAT
TCCATGCCTAAATTACCTGAACGGAACTCGAGATCCGCCGTCGAGCTGCTGCAATCCTCTGAAATCGGTGATCGATTCCAATCCCGATTGCCTCTGCGCTTTAATTAGCA
GAGACGGAAGCGATCGAGCAGAGCAAGCCGGCATCGATGTCAGCCAGGCTCAACTCTTGCCCGGCCGATGCGGCGAACATGTTAATCCGCTCTCTTGCCTCGCCGCCGCC
AATAATGCTCGTAATTTCCTCTTCTTTCTTGCTTCAGATCCGGCGCTCGCTCTCCATCTCTTCCACTCTGCAACTGATTTCGCTTACGAGTACCGCATCGCTTCTCATGT
CTGGAATTCTGCAGATTCCGCCTCTGTCCTCACGGCGGCGACGCTTGAAACAACCCACCGCCGATCATTTCTACACCATGTTTGTAAGCTTTCGGATCTGAATCGGCCTC
TAAATCTGAAACTGCCTGGTCTTTCTGCATTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGAAGCCTTGGACAGGAATCTTGACGGCAATGCTACTCGTACTGGCTTCCGCCATGGCGTTTCAAGGCCGTGCTCAAGACACTTCCTGCATGAATAGGTTAAT
TCCATGCCTAAATTACCTGAACGGAACTCGAGATCCGCCGTCGAGCTGCTGCAATCCTCTGAAATCGGTGATCGATTCCAATCCCGATTGCCTCTGCGCTTTAATTAGCA
GAGACGGAAGCGATCGAGCAGAGCAAGCCGGCATCGATGTCAGCCAGGCTCAACTCTTGCCCGGCCGATGCGGCGAACATGTTAATCCGCTCTCTTGCCTCGCCGCCGCC
AATAATGCTCGTAATTTCCTCTTCTTTCTTGCTTCAGATCCGGCGCTCGCTCTCCATCTCTTCCACTCTGCAACTGATTTCGCTTACGAGTACCGCATCGCTTCTCATGT
CTGGAATTCTGCAGATTCCGCCTCTGTCCTCACGGCGGCGACGCTTGAAACAACCCACCGCCGATCATTTCTACACCATGTTTGTAAGCTTTCGGATCTGAATCGGCCTC
TAAATCTGAAACTGCCTGGTCTTTCTGCATTCTGA
Protein sequenceShow/hide protein sequence
MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAA
NNARNFLFFLASDPALALHLFHSATDFAYEYRIASHVWNSADSASVLTAATLETTHRRSFLHHVCKLSDLNRPLNLKLPGLSAF