; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg22321 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22321
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationCarg_Chr16:7665728..7666545
RNA-Seq ExpressionCarg22321
SyntenyCarg22321
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN77772.1 hypothetical protein VITISV_037439 [Vitis vinifera]5.9e-3340.73Show/hide
Query:  MFICGKGKNEYFSKEIVQPKATNPEFMKWKVENNMVMSLLINYTTNEISENFLLYGTTHQIWDNLKETYSSYQFVTDYFNTPIIGKKWIYLKSIHGSMPP
        +FICGKGKNEY + E V P+ T P F KWK+EN+M+MS LIN   N+I ENFLL+GT   IWD  KETYSS +  ++ F       + + L   H     
Subjt:  MFICGKGKNEYFSKEIVQPKATNPEFMKWKVENNMVMSLLINYTTNEISENFLLYGTTHQIWDNLKETYSSYQFVTDYFNTPIIGKKWIYLKSIHGSMPP

Query:  MIRLNKQKFLRKKRHSNSFLALSTILMKFEVETWEPSHCQTLRKAFSEVRREECRKCAIMGKSESVSTFL----IAFCSFNSMVQSDKKLKQLRPRCENC
              ++ + +KR    FL L+  L     +        +LR+AFSEVRREE RK  IMG  E  +  L    +A  SFNS      + K+ RP C+ C
Subjt:  MIRLNKQKFLRKKRHSNSFLALSTILMKFEVETWEPSHCQTLRKAFSEVRREECRKCAIMGKSESVSTFL----IAFCSFNSMVQSDKKLKQLRPRCENC

Query:  K----------TIHGKPANWKPRHHNDHDGRAYVVNVAPYNSNNSKST
        K           +HGKPA+WKP+   D DGRA+V       + NS+ST
Subjt:  K----------TIHGKPANWKPRHHNDHDGRAYVVNVAPYNSNNSKST

KAG7015586.1 hypothetical protein SDJN02_23222, partial [Cucurbita argyrosperma subsp. argyrosperma]6.3e-136100Show/hide
Query:  MFICGKGKNEYFSKEIVQPKATNPEFMKWKVENNMVMSLLINYTTNEISENFLLYGTTHQIWDNLKETYSSYQFVTDYFNTPIIGKKWIYLKSIHGSMPP
        MFICGKGKNEYFSKEIVQPKATNPEFMKWKVENNMVMSLLINYTTNEISENFLLYGTTHQIWDNLKETYSSYQFVTDYFNTPIIGKKWIYLKSIHGSMPP
Subjt:  MFICGKGKNEYFSKEIVQPKATNPEFMKWKVENNMVMSLLINYTTNEISENFLLYGTTHQIWDNLKETYSSYQFVTDYFNTPIIGKKWIYLKSIHGSMPP

Query:  MIRLNKQKFLRKKRHSNSFLALSTILMKFEVETWEPSHCQTLRKAFSEVRREECRKCAIMGKSESVSTFLIAFCSFNSMVQSDKKLKQLRPRCENCKTIH
        MIRLNKQKFLRKKRHSNSFLALSTILMKFEVETWEPSHCQTLRKAFSEVRREECRKCAIMGKSESVSTFLIAFCSFNSMVQSDKKLKQLRPRCENCKTIH
Subjt:  MIRLNKQKFLRKKRHSNSFLALSTILMKFEVETWEPSHCQTLRKAFSEVRREECRKCAIMGKSESVSTFLIAFCSFNSMVQSDKKLKQLRPRCENCKTIH

Query:  GKPANWKPRHHNDHDGRAYVVNVAPYNSNNSKSTPFSK
        GKPANWKPRHHNDHDGRAYVVNVAPYNSNNSKSTPFSK
Subjt:  GKPANWKPRHHNDHDGRAYVVNVAPYNSNNSKSTPFSK

RVW53418.1 hypothetical protein CK203_085002 [Vitis vinifera]3.4e-3340.31Show/hide
Query:  MFICGKGKNEYFSKEIVQPKATNPEFMKWKVENNMVMSLLINYTTNEISENFLLYGTTHQIWDNLKETYSSYQFVTDYFNTPIIGKKWIYLKSIHGSMPP
        +FICGKGKNEY + E V P+ T P F KWK+EN+M+MS LIN   N+I ENFLL+GT   IWD  KETYSS +  ++ F       + + L   H     
Subjt:  MFICGKGKNEYFSKEIVQPKATNPEFMKWKVENNMVMSLLINYTTNEISENFLLYGTTHQIWDNLKETYSSYQFVTDYFNTPIIGKKWIYLKSIHGSMPP

Query:  MIRLNKQKFLRKKRHSNSFLALSTILMKFEVETWEPSHCQTLRKAFSEVRREECRKCAIMGKSESVSTFL----IAFCSFNSMVQSDKKLKQLRPRCENC
              ++ + +KR    FL L+  L     +        +LR+AFSEVRREE RK  IMG  E  +  L    +A  SFNS      + K+ RP C+ C
Subjt:  MIRLNKQKFLRKKRHSNSFLALSTILMKFEVETWEPSHCQTLRKAFSEVRREECRKCAIMGKSESVSTFL----IAFCSFNSMVQSDKKLKQLRPRCENC

Query:  K----------TIHGKPANWKPRHHNDHDGRAYVVNVAPYNSNNSKST------PFSK
        K           +HGKPA+WKP+   D DGRA+V       + NS+ST      PF+K
Subjt:  K----------TIHGKPANWKPRHHNDHDGRAYVVNVAPYNSNNSKST------PFSK

RVW56768.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]7.7e-3339.53Show/hide
Query:  MFICGKGKNEYFSKEIVQPKATNPEFMKWKVENNMVMSLLINYTTNEISENFLLYGTTHQIWDNLKETYSSYQFVTDYFNTPIIGKKWIYLKSIHGSMPP
        +FICGKGK+EY + E V P+ T P F KWK+EN+M+MS LIN   N+I ENFLL+GT   IWD  KETYSS +  ++ F        +   +        
Subjt:  MFICGKGKNEYFSKEIVQPKATNPEFMKWKVENNMVMSLLINYTTNEISENFLLYGTTHQIWDNLKETYSSYQFVTDYFNTPIIGKKWIYLKSIHGSMPP

Query:  MIRLNKQKFLRKKRHSNSFLALSTILMKFEVETWEPSHCQTLRKAFSEVRREECRKCAIMGKSESVSTFL----IAFCSFNSMVQSDKKLKQLRPRCENC
         +  N Q+ + +KR    FL L+  L              +LR+AFSEVRREE RK  +MG  E  +  L    +A  SFNS      + K+ RP C+ C
Subjt:  MIRLNKQKFLRKKRHSNSFLALSTILMKFEVETWEPSHCQTLRKAFSEVRREECRKCAIMGKSESVSTFL----IAFCSFNSMVQSDKKLKQLRPRCENC

Query:  K----------TIHGKPANWKPRHHNDHDGRAYVVNVAPYNSNNSKST------PFSK
        K           +HGKPA+WKP+   D DGRA+V       + NS+ST      PF+K
Subjt:  K----------TIHGKPANWKPRHHNDHDGRAYVVNVAPYNSNNSKST------PFSK

RVW82011.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]2.6e-3338.49Show/hide
Query:  MFICGKGKNEYFSKEIVQPKATNPEFMKWKVENNMVMSLLINYTTNEISENFLLYGTTHQIWDNLKETYSS--------------------YQFVTDYFN
        +FICGKGK+EY + E V P+ T P F KWK+EN+M+MS LIN   N+I ENFLL+GT   IWD  KETYSS                     Q VT Y+N
Subjt:  MFICGKGKNEYFSKEIVQPKATNPEFMKWKVENNMVMSLLINYTTNEISENFLLYGTTHQIWDNLKETYSS--------------------YQFVTDYFN

Query:  TPIIGKKWIYLKSIHGSMPPMIRLNKQKFLRKKRHSNSFLALSTILMKFEVETWEPSHCQTLRKAFSEVRREECRKCAIMGKSE----SVSTFLIAFCSF
        T     + + L   H     M+    ++ + +KR    FL L+  L              +LR+AFSEVRREE RK  +MG  E    +++   +A  SF
Subjt:  TPIIGKKWIYLKSIHGSMPPMIRLNKQKFLRKKRHSNSFLALSTILMKFEVETWEPSHCQTLRKAFSEVRREECRKCAIMGKSE----SVSTFLIAFCSF

Query:  NSMVQSDKKLKQLRPRCENCK----------TIHGKPANWKPRHHNDHDGRAYVVNVAPYNSNNSKST------PFSK
        NS      + K+ RP C+ CK           +HGKPA+WKP+   D DGRA+V       + NS+ST      PF+K
Subjt:  NSMVQSDKKLKQLRPRCENCK----------TIHGKPANWKPRHHNDHDGRAYVVNVAPYNSNNSKST------PFSK

TrEMBL top hitse value%identityAlignment
A0A438F087 Uncharacterized protein1.7e-3340.31Show/hide
Query:  MFICGKGKNEYFSKEIVQPKATNPEFMKWKVENNMVMSLLINYTTNEISENFLLYGTTHQIWDNLKETYSSYQFVTDYFNTPIIGKKWIYLKSIHGSMPP
        +FICGKGKNEY + E V P+ T P F KWK+EN+M+MS LIN   N+I ENFLL+GT   IWD  KETYSS +  ++ F       + + L   H     
Subjt:  MFICGKGKNEYFSKEIVQPKATNPEFMKWKVENNMVMSLLINYTTNEISENFLLYGTTHQIWDNLKETYSSYQFVTDYFNTPIIGKKWIYLKSIHGSMPP

Query:  MIRLNKQKFLRKKRHSNSFLALSTILMKFEVETWEPSHCQTLRKAFSEVRREECRKCAIMGKSESVSTFL----IAFCSFNSMVQSDKKLKQLRPRCENC
              ++ + +KR    FL L+  L     +        +LR+AFSEVRREE RK  IMG  E  +  L    +A  SFNS      + K+ RP C+ C
Subjt:  MIRLNKQKFLRKKRHSNSFLALSTILMKFEVETWEPSHCQTLRKAFSEVRREECRKCAIMGKSESVSTFL----IAFCSFNSMVQSDKKLKQLRPRCENC

Query:  K----------TIHGKPANWKPRHHNDHDGRAYVVNVAPYNSNNSKST------PFSK
        K           +HGKPA+WKP+   D DGRA+V       + NS+ST      PF+K
Subjt:  K----------TIHGKPANWKPRHHNDHDGRAYVVNVAPYNSNNSKST------PFSK

A0A438F9Y7 Retrovirus-related Pol polyprotein from transposon RE13.7e-3339.53Show/hide
Query:  MFICGKGKNEYFSKEIVQPKATNPEFMKWKVENNMVMSLLINYTTNEISENFLLYGTTHQIWDNLKETYSSYQFVTDYFNTPIIGKKWIYLKSIHGSMPP
        +FICGKGK+EY + E V P+ T P F KWK+EN+M+MS LIN   N+I ENFLL+GT   IWD  KETYSS +  ++ F        +   +        
Subjt:  MFICGKGKNEYFSKEIVQPKATNPEFMKWKVENNMVMSLLINYTTNEISENFLLYGTTHQIWDNLKETYSSYQFVTDYFNTPIIGKKWIYLKSIHGSMPP

Query:  MIRLNKQKFLRKKRHSNSFLALSTILMKFEVETWEPSHCQTLRKAFSEVRREECRKCAIMGKSESVSTFL----IAFCSFNSMVQSDKKLKQLRPRCENC
         +  N Q+ + +KR    FL L+  L              +LR+AFSEVRREE RK  +MG  E  +  L    +A  SFNS      + K+ RP C+ C
Subjt:  MIRLNKQKFLRKKRHSNSFLALSTILMKFEVETWEPSHCQTLRKAFSEVRREECRKCAIMGKSESVSTFL----IAFCSFNSMVQSDKKLKQLRPRCENC

Query:  K----------TIHGKPANWKPRHHNDHDGRAYVVNVAPYNSNNSKST------PFSK
        K           +HGKPA+WKP+   D DGRA+V       + NS+ST      PF+K
Subjt:  K----------TIHGKPANWKPRHHNDHDGRAYVVNVAPYNSNNSKST------PFSK

A0A438HC27 Retrovirus-related Pol polyprotein from transposon RE11.3e-3338.49Show/hide
Query:  MFICGKGKNEYFSKEIVQPKATNPEFMKWKVENNMVMSLLINYTTNEISENFLLYGTTHQIWDNLKETYSS--------------------YQFVTDYFN
        +FICGKGK+EY + E V P+ T P F KWK+EN+M+MS LIN   N+I ENFLL+GT   IWD  KETYSS                     Q VT Y+N
Subjt:  MFICGKGKNEYFSKEIVQPKATNPEFMKWKVENNMVMSLLINYTTNEISENFLLYGTTHQIWDNLKETYSS--------------------YQFVTDYFN

Query:  TPIIGKKWIYLKSIHGSMPPMIRLNKQKFLRKKRHSNSFLALSTILMKFEVETWEPSHCQTLRKAFSEVRREECRKCAIMGKSE----SVSTFLIAFCSF
        T     + + L   H     M+    ++ + +KR    FL L+  L              +LR+AFSEVRREE RK  +MG  E    +++   +A  SF
Subjt:  TPIIGKKWIYLKSIHGSMPPMIRLNKQKFLRKKRHSNSFLALSTILMKFEVETWEPSHCQTLRKAFSEVRREECRKCAIMGKSE----SVSTFLIAFCSF

Query:  NSMVQSDKKLKQLRPRCENCK----------TIHGKPANWKPRHHNDHDGRAYVVNVAPYNSNNSKST------PFSK
        NS      + K+ RP C+ CK           +HGKPA+WKP+   D DGRA+V       + NS+ST      PF+K
Subjt:  NSMVQSDKKLKQLRPRCENCK----------TIHGKPANWKPRHHNDHDGRAYVVNVAPYNSNNSKST------PFSK

A0A438KNE1 Copia protein4.9e-3338.85Show/hide
Query:  MFICGKGKNEYFSKEIVQPKATNPEFMKWKVENNMVMSLLINYTTNEISENFLLYGTTHQIWDNLKETYSS--------------------YQFVTDYFN
        +FICGKGK+EY + E V P+ T P F KWK+ENNM+MS LIN   N+I ENFLL+GT   IWD  KETYSS                     Q VT Y+N
Subjt:  MFICGKGKNEYFSKEIVQPKATNPEFMKWKVENNMVMSLLINYTTNEISENFLLYGTTHQIWDNLKETYSS--------------------YQFVTDYFN

Query:  TPIIGKKWIYLKSIHGSMPPMIRLNKQKFLRKKRHSNSFLALSTILMKFEVETWEPSHCQTLRKAFSEVRREECRKCAIMGKSESVSTFL----IAFCSF
        T     + + L   H           ++ + +KR    FL L+  L              +LR+AFSEVRREE RK  +MG  E  +  L    +A  SF
Subjt:  TPIIGKKWIYLKSIHGSMPPMIRLNKQKFLRKKRHSNSFLALSTILMKFEVETWEPSHCQTLRKAFSEVRREECRKCAIMGKSESVSTFL----IAFCSF

Query:  NSMVQSDKKLKQLRPRCENCK----------TIHGKPANWKPRHHNDHDGRAYVVNVAPYNSNNSKST------PFSK
        NS      + K+ RP C+ CK           +HGKPA+WKP+   D DGRA+V       + NS+ST      PF+K
Subjt:  NSMVQSDKKLKQLRPRCENCK----------TIHGKPANWKPRHHNDHDGRAYVVNVAPYNSNNSKST------PFSK

A5CB13 Integrase catalytic domain-containing protein2.8e-3340.73Show/hide
Query:  MFICGKGKNEYFSKEIVQPKATNPEFMKWKVENNMVMSLLINYTTNEISENFLLYGTTHQIWDNLKETYSSYQFVTDYFNTPIIGKKWIYLKSIHGSMPP
        +FICGKGKNEY + E V P+ T P F KWK+EN+M+MS LIN   N+I ENFLL+GT   IWD  KETYSS +  ++ F       + + L   H     
Subjt:  MFICGKGKNEYFSKEIVQPKATNPEFMKWKVENNMVMSLLINYTTNEISENFLLYGTTHQIWDNLKETYSSYQFVTDYFNTPIIGKKWIYLKSIHGSMPP

Query:  MIRLNKQKFLRKKRHSNSFLALSTILMKFEVETWEPSHCQTLRKAFSEVRREECRKCAIMGKSESVSTFL----IAFCSFNSMVQSDKKLKQLRPRCENC
              ++ + +KR    FL L+  L     +        +LR+AFSEVRREE RK  IMG  E  +  L    +A  SFNS      + K+ RP C+ C
Subjt:  MIRLNKQKFLRKKRHSNSFLALSTILMKFEVETWEPSHCQTLRKAFSEVRREECRKCAIMGKSESVSTFL----IAFCSFNSMVQSDKKLKQLRPRCENC

Query:  K----------TIHGKPANWKPRHHNDHDGRAYVVNVAPYNSNNSKST
        K           +HGKPA+WKP+   D DGRA+V       + NS+ST
Subjt:  K----------TIHGKPANWKPRHHNDHDGRAYVVNVAPYNSNNSKST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCATATGTGGCAAGGGTAAGAATGAGTACTTCTCGAAAGAGATTGTGCAGCCTAAAGCAACTAATCCCGAATTCATGAAGTGGAAAGTAGAAAATAACATGGTCAT
GTCGTTGTTAATTAATTACACAACCAATGAGATAAGTGAAAATTTTCTTCTGTACGGAACAACACATCAAATTTGGGACAATCTCAAGGAAACATACTCTAGTTATCAAT
TTGTTACTGATTACTTTAATACTCCTATCATTGGAAAAAAGTGGATTTATTTGAAGTCTATTCATGGAAGTATGCCACCAATGATACGACTCAATAAACAGAAATTCTTG
AGGAAAAAGAGACACTCAAATTCCTTCTTGGCCTTATCAACGATCTTGATGAAGTTCGAGGTCGAAACATGGGAACCAAGTCATTGCCAAACTCTTCGCAAAGCCTTCTC
TGAAGTAAGGCGAGAAGAATGTAGGAAATGTGCAATAATGGGCAAATCAGAATCAGTCTCTACTTTCTTGATAGCATTTTGTAGTTTTAACTCAATGGTACAAAGTGACA
AAAAGCTAAAACAATTGAGGCCTCGGTGTGAGAATTGCAAAACGATCCATGGGAAGCCTGCTAATTGGAAACCTAGGCATCACAATGATCATGATGGTAGGGCCTATGTG
GTTAACGTAGCTCCGTATAATTCTAACAATTCGAAGTCAACACCATTTAGCAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCATATGTGGCAAGGGTAAGAATGAGTACTTCTCGAAAGAGATTGTGCAGCCTAAAGCAACTAATCCCGAATTCATGAAGTGGAAAGTAGAAAATAACATGGTCAT
GTCGTTGTTAATTAATTACACAACCAATGAGATAAGTGAAAATTTTCTTCTGTACGGAACAACACATCAAATTTGGGACAATCTCAAGGAAACATACTCTAGTTATCAAT
TTGTTACTGATTACTTTAATACTCCTATCATTGGAAAAAAGTGGATTTATTTGAAGTCTATTCATGGAAGTATGCCACCAATGATACGACTCAATAAACAGAAATTCTTG
AGGAAAAAGAGACACTCAAATTCCTTCTTGGCCTTATCAACGATCTTGATGAAGTTCGAGGTCGAAACATGGGAACCAAGTCATTGCCAAACTCTTCGCAAAGCCTTCTC
TGAAGTAAGGCGAGAAGAATGTAGGAAATGTGCAATAATGGGCAAATCAGAATCAGTCTCTACTTTCTTGATAGCATTTTGTAGTTTTAACTCAATGGTACAAAGTGACA
AAAAGCTAAAACAATTGAGGCCTCGGTGTGAGAATTGCAAAACGATCCATGGGAAGCCTGCTAATTGGAAACCTAGGCATCACAATGATCATGATGGTAGGGCCTATGTG
GTTAACGTAGCTCCGTATAATTCTAACAATTCGAAGTCAACACCATTTAGCAAATAA
Protein sequenceShow/hide protein sequence
MFICGKGKNEYFSKEIVQPKATNPEFMKWKVENNMVMSLLINYTTNEISENFLLYGTTHQIWDNLKETYSSYQFVTDYFNTPIIGKKWIYLKSIHGSMPPMIRLNKQKFL
RKKRHSNSFLALSTILMKFEVETWEPSHCQTLRKAFSEVRREECRKCAIMGKSESVSTFLIAFCSFNSMVQSDKKLKQLRPRCENCKTIHGKPANWKPRHHNDHDGRAYV
VNVAPYNSNNSKSTPFSK