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Carg22343 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22343
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTHO complex subunit 3-like isoform X2
Genome locationCarg_Chr16:7467302..7468215
RNA-Seq ExpressionCarg22343
SyntenyCarg22343
Gene Ontology termsGO:0006406 - mRNA export from nucleus (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577506.1 Actin-related protein 8, partial [Cucurbita argyrosperma subsp. sororia]1.6e-10100Show/hide
Query:  MPMGNSHSKMSSVGENININITYKPDGTHIAVGNS
        MPMGNSHSKMSSVGENININITYKPDGTHIAVGNS
Subjt:  MPMGNSHSKMSSVGENININITYKPDGTHIAVGNS
KAG7015563.1 hypothetical protein SDJN02_23199 [Cucurbita argyrosperma subsp. argyrosperma]1.3e-23100Show/hide
Query:  MPMGNSHSKMSSVGENININITYKPDGTHIAVGNSVCSWLKFVYYKAKPSASRYG
        MPMGNSHSKMSSVGENININITYKPDGTHIAVGNSVCSWLKFVYYKAKPSASRYG
Subjt:  MPMGNSHSKMSSVGENININITYKPDGTHIAVGNSVCSWLKFVYYKAKPSASRYG
XP_022932318.1 THO complex subunit 3-like isoform X1 [Cucurbita moschata]4.4e-0896.97Show/hide
Query:  MGNSHSKMSSVGENININITYKPDGTHIAVGNS
        MGNSHSKMSSV ENININITYKPDGTHIAVGNS
Subjt:  MGNSHSKMSSVGENININITYKPDGTHIAVGNS
XP_022932321.1 THO complex subunit 3-like isoform X2 [Cucurbita moschata]1.8e-0997.14Show/hide
Query:  MPMGNSHSKMSSVGENININITYKPDGTHIAVGNS
        MPMGNSHSKMSSV ENININITYKPDGTHIAVGNS
Subjt:  MPMGNSHSKMSSVGENININITYKPDGTHIAVGNS
TrEMBL top hitse value%identityAlignment
A0A6J1EW21 THO complex subunit 3-like isoform X28.7e-1097.14Show/hide
Query:  MPMGNSHSKMSSVGENININITYKPDGTHIAVGNS
        MPMGNSHSKMSSV ENININITYKPDGTHIAVGNS
Subjt:  MPMGNSHSKMSSVGENININITYKPDGTHIAVGNS
A0A6J1F1C1 THO complex subunit 3-like isoform X12.1e-0896.97Show/hide
Query:  MGNSHSKMSSVGENININITYKPDGTHIAVGNS
        MGNSHSKMSSV ENININITYKPDGTHIAVGNS
Subjt:  MGNSHSKMSSVGENININITYKPDGTHIAVGNS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G56130.1 Transducin/WD40 repeat-like superfamily protein7.0e-0494.12Show/hide
Query:  NINITYKPDGTHIAVGN
        NINITYKPDGTH+AVGN
Subjt:  NINITYKPDGTHIAVGN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCATGGGAAATTCTCACAGCAAGATGAGCTCAGTGGGGGAAAATATCAATATCAATATCACCTACAAACCTGATGGCACGCACATAGCTGTTGGGAATAGCGTATG
TTCTTGGCTGAAATTTGTGTATTATAAAGCCAAACCTAGTGCGAGTAGATATGGATGA
mRNA sequenceShow/hide mRNA sequence
AGCTATGCTGGGACCATAAACATTCTGATCTTATAGCGACTGCATCTGGAGACAAGGCTGTTATTCTATAGGATGCCCATGGGAAATTCTCACAGCAAGATGAGCTCAGT
GGGGGAAAATATCAATATCAATATCACCTACAAACCTGATGGCACGCACATAGCTGTTGGGAATAGCGTATGTTCTTGGCTGAAATTTGTGTATTATAAAGCCAAACCTA
GTGCGAGTAGATATGGATGATGAACTTACAATTCTGGATGTTAGGAAGTTTAAACCAGTTCACAAGCGCAAGTTCAATTATGAGGTAATGCTTATCTACAATAATCAACG
GTAACTCAACCATTGGACCATTTATGGAAACTTTAAAGGAGGATTGTGT
Protein sequenceShow/hide protein sequence
MPMGNSHSKMSSVGENININITYKPDGTHIAVGNSVCSWLKFVYYKAKPSASRYG