CuGenDBv2

Gene ID	Carg22344
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RNA polymerase II elongation factor
Genome location	Carg_Chr16:7464993..7465640
RNA-Seq Expression	Carg22344
Synteny	Carg22344
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7015562.1 hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.6e-117

100

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Query:  MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN
        MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN
Subjt:  MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN

Query:  VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLCF
        VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLCF
Subjt:  VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLCF

Query:  SGIVFGASKFILCGL
        SGIVFGASKFILCGL
Subjt:  SGIVFGASKFILCGL

XP_022932317.1 uncharacterized protein LOC111438709 [Cucurbita moschata]

3.3e-115

99.07

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Query:  MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN
        MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN
Subjt:  MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN

Query:  VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLCF
        VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLT LSRNFVTI LLCF
Subjt:  VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLCF

Query:  SGIVFGASKFILCGL
        SGIVFGASKFILCGL
Subjt:  SGIVFGASKFILCGL

XP_022965180.1 uncharacterized protein LOC111465114 [Cucurbita maxima]

1.1e-115

98.14

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Query:  MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN
        MATETKDSGAA H+VEIPAENQN+MISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN
Subjt:  MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN

Query:  VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLCF
        VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTR VQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLCF
Subjt:  VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLCF

Query:  SGIVFGASKFILCGL
        SGIVFGASKFILCGL
Subjt:  SGIVFGASKFILCGL

XP_023553388.1 uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo]

3.6e-114

97.67

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Query:  MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN
        MATET+DSG AAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR+GRRETK+ESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN
Subjt:  MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN

Query:  VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLCF
        VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTI LLCF
Subjt:  VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLCF

Query:  SGIVFGASKFILCGL
        SGIVFGASKFILCGL
Subjt:  SGIVFGASKFILCGL

XP_038905570.1 uncharacterized protein LOC120091553 [Benincasa hispida]

3.9e-100

87.5

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Query:  ETKDSGAAAHVVEIPAE------NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSS
        ETKDSG  AH+VEIP E      NQN MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSS
Subjt:  ETKDSGAAAHVVEIPAE------NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSS

Query:  DPNVCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFL
        DPNVC KWWVP VAMGATSGVFVIVVQLKLWLYWKAS QLQREK+ENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW SRNF+TIFL
Subjt:  DPNVCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFL

Query:  LCFSGIVFGASKFILC
        L FS IVF ASKFILC
Subjt:  LCFSGIVFGASKFILC

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2U7 Uncharacterized protein

6.2e-96

83.72

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Query:  ETKDSGAAAHVVEIPAE----NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDP
        ETKDS  AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP
Subjt:  ETKDSGAAAHVVEIPAE----NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDP

Query:  NVCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLC
         VC KWWVP V +GATSGVFVIVVQLKLW+YWKA  QLQ+EK+ENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW SRNF+TI LL 
Subjt:  NVCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLC

Query:  FSGIVFGASKFILCG
        FS I+F  SKFILCG
Subjt:  FSGIVFGASKFILCG

A0A1S3BL81 uncharacterized protein LOC103491049

3.6e-96

84.19

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Query:  ETKDSGAAAHVVEIPAE----NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDP
        +TKDS  AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP
Subjt:  ETKDSGAAAHVVEIPAE----NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDP

Query:  NVCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLC
         VC KWWVP V +GATSGVFVIVVQLKLW+YWKA  QLQREKSENRALTRC QELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW SRNF+ I LL 
Subjt:  NVCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLC

Query:  FSGIVFGASKFILCG
        FS IVF ASKFILCG
Subjt:  FSGIVFGASKFILCG

A0A5A7VJ68 Uncharacterized protein

2.7e-67

87.07

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Query:  LESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEP
        +ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP VC KWWVP V +GATSGVFVIVVQLKLW+YWKA  QLQREKSENRALTRCVQELRMKGSCFNLSKEP
Subjt:  LESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEP

Query:  QIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCG
        QIG+RMKSSSVEIKWGPLTW SRNF+ I LL FS IVF ASKFILCG
Subjt:  QIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCG

A0A6J1EWB5 uncharacterized protein LOC111438709

1.6e-115

99.07

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Query:  MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN
        MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN
Subjt:  MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN

Query:  VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLCF
        VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLT LSRNFVTI LLCF
Subjt:  VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLCF

Query:  SGIVFGASKFILCGL
        SGIVFGASKFILCGL
Subjt:  SGIVFGASKFILCGL

A0A6J1HN07 uncharacterized protein LOC111465114

5.4e-116

98.14

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Query:  MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN
        MATETKDSGAA H+VEIPAENQN+MISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN
Subjt:  MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN

Query:  VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLCF
        VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTR VQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLCF
Subjt:  VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLCF

Query:  SGIVFGASKFILCGL
        SGIVFGASKFILCGL
Subjt:  SGIVFGASKFILCGL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G12870.1 unknown protein

1.8e-26

36.65

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Query:  QHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLF-------TSSDPNVCHKWWVPGVAMGATSGVFVIVV
        +HPL QI+++  H LLLK W +EE L   R+  +E++++S++++I QL  +FFLFH++SL LLF       +S+  + C + W+P +    +S   +  V
Subjt:  QHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLF-------TSSDPNVCHKWWVPGVAMGATSGVFVIVV

Query:  QLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPL-TWLSRNFVTIFLLCFSGIVFGASKFILC
        + K  +       L+REK + + L +CV+EL+ KG  F+L KE     R KS  VE K  P+  W +R+FVT+F    S +V    + ILC
Subjt:  QLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPL-TWLSRNFVTIFLLCFSGIVFGASKFILC

AT5G56120.1 unknown protein

3.8e-61

52.12

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Query:  TKDSGAAAHVVEIPAENQNV-----------------MISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHA
        TKDS    HVVEIP + ++                  ++ VI+QHPL +ISES GHLLLLKLWQREE LF  R+  +E++LES+K++IFQLCC+F +FH 
Subjt:  TKDSGAAAHVVEIPAENQNV-----------------MISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHA

Query:  LSLTLLFTSSDPN---------VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSV
           TL+++SS  +         VC KWW+P     ATS V V +VQ KL+++WK    + RE+++NR LTRCV ELRMKGS F+LSKEP  G RMKSSSV
Subjt:  LSLTLLFTSSDPN---------VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSV

Query:  EIKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCG
        EIKW P+TW S+  +TI LLC +G+ F  SKFILCG
Subjt:  EIKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCG

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCGACCGAAACGAAAGATTCCGGTGCCGCCGCGCACGTAGTCGAAATCCCAGCAGAGAATCAGAACGTTATGATCTCTGTAATAGAACAACACCCATTGAGGCAAAT
CTCCGAAAGCTCTGGCCATTTATTGCTTTTAAAGCTCTGGCAACGAGAGGAGCATCTGTTCGGCCTACGAATTGGGCGGCGAGAGACCAAACTGGAGTCTCTAAAGCAAC
AGATCTTCCAACTCTGCTGCTACTTCTTCCTGTTCCACGCCCTGTCTCTGACTCTCTTGTTCACTTCGTCCGATCCCAATGTGTGCCACAAATGGTGGGTTCCGGGAGTG
GCAATGGGGGCGACGTCGGGCGTGTTCGTGATCGTGGTGCAGCTGAAATTGTGGCTGTATTGGAAGGCATCAGCGCAGCTGCAAAGGGAGAAGAGTGAGAACAGAGCACT
TACAAGATGTGTTCAAGAGCTGAGGATGAAAGGGTCGTGTTTTAATTTGTCGAAAGAGCCTCAAATTGGGCATAGGATGAAGAGCTCTAGTGTGGAGATTAAATGGGGGC
CTCTTACTTGGTTGTCCAGGAATTTCGTCACCATTTTTCTTCTGTGCTTTTCTGGCATTGTTTTTGGTGCTTCCAAGTTCATACTCTGTGGCCTTTGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGV
AMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCGL

Carg22344 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome