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Carg22417 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22417
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAvrRpt-cleavage domain-containing protein
Genome locationCarg_Chr01:9104877..9105762
RNA-Seq ExpressionCarg22417
SyntenyCarg22417
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7030269.1 RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma]4.7e-2895.45Show/hide
Query:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPPVRY
        M DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR GA+PAKAPPVRY
Subjt:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPPVRY
KAG7037321.1 RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma]2.1e-31100Show/hide
Query:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPPVRYHS
        MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPPVRYHS
Subjt:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPPVRYHS
XP_022139562.1 RPM1-interacting protein 4 [Momordica charantia]1.5e-2689.39Show/hide
Query:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPPVRY
        M DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA+GRPGA+P+KAPP ++
Subjt:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPPVRY
XP_022941007.1 RPM1-interacting protein 4-like [Cucurbita moschata]2.1e-2895.45Show/hide
Query:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPPVRY
        MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPP ++
Subjt:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPPVRY
XP_022975420.1 uncharacterized protein LOC111474733 isoform X1 [Cucurbita maxima]2.0e-2690.91Show/hide
Query:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPPVRY
        M DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR GA+PAKAPP ++
Subjt:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPPVRY
TrEMBL top hitse value%identityAlignment
A0A6J1CEA3 RPM1-interacting protein 47.4e-2789.39Show/hide
Query:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPPVRY
        M DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA+GRPGA+P+KAPP ++
Subjt:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPPVRY
A0A6J1FL74 RPM1-interacting protein 4-like1.0e-2895.45Show/hide
Query:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPPVRY
        MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPP ++
Subjt:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPPVRY
A0A6J1ID15 uncharacterized protein LOC111474733 isoform X29.6e-2790.91Show/hide
Query:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPPVRY
        M DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR GA+PAKAPP ++
Subjt:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPPVRY
A0A6J1IGN4 uncharacterized protein LOC111474733 isoform X19.6e-2790.91Show/hide
Query:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPPVRY
        M DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR GA+PAKAPP ++
Subjt:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPPVRY
A0A6J1J2H2 RPM1-interacting protein 4-like1.0e-2895.45Show/hide
Query:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPPVRY
        MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPP ++
Subjt:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPPVRY
SwissProt top hitse value%identityAlignment
O22633 Protein NOI44.9e-2071.01Show/hide
Query:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR---PGANPAKAPPVRY
        M+DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  ++G     G +P+K  P ++
Subjt:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR---PGANPAKAPPVRY
Q8GYN5 RPM1-interacting protein 45.3e-0654.05Show/hide
Query:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTG
        +K   +PKFG+WD N+P+SA+G+T IFNK R+E+ +G
Subjt:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTG
Arabidopsis top hitse value%identityAlignment
AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein1.1e-1980.7Show/hide
Query:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGAN
        MADKGRPLPKFGEWDVNDP+SAEGFTVIFNKAR+EKK GGK DSPGK      PG N
Subjt:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGAN
AT5G55850.1 RPM1-interacting protein 4 (RIN4) family protein1.6e-2173.53Show/hide
Query:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR---PGANPAKAPPVR
        M+DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  ++G     G +P+K  PV+
Subjt:  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR---PGANPAKAPPVR
AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein1.0e-2074.24Show/hide
Query:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR---PGANPAKAPPVR
        DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  ++G     G +P+K  PV+
Subjt:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR---PGANPAKAPPVR
AT5G55850.3 RPM1-interacting protein 4 (RIN4) family protein2.3e-2071.64Show/hide
Query:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR---PGANPAKAPPVRY
        DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  ++G     G +P+K  P ++
Subjt:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR---PGANPAKAPPVRY
AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein1.3e-1271.74Show/hide
Query:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKT----GGKPDS
        +KG+PLPKFGEWDVN+P SAEGFTVIF+KA DEKKT    G  P+S
Subjt:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKT----GGKPDS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGACAAGGGTCGGCCATTGCCCAAATTTGGTGAGTGGGATGTTAATGATCCAACATCTGCTGAGGGATTTACTGTGATATTTAACAAAGCTAGAGATGAGAAGAA
AACAGGCGGCAAACCTGATTCACCTGGAAAAGTTGATGCACAGGGCAGGCCTGGAGCAAATCCTGCCAAGGCACCGCCTGTAAGATATCATTCATAA
mRNA sequenceShow/hide mRNA sequence
ATAGGAAAAGGATTTTCCGTATCCAATAAGACCACTTTTGCCCCAATTTACAAAAGTCGCCTCTTCTACTCTCTCAATCCGTCTTTGTTATTTTCTCTCATTCATTGTTT
TCAAATTCATTTCTTTTTCCTCGGAATCGTTCTCTCTGGAATTCATGGCGGACAAGGGTCGGCCATTGCCCAAATTTGGTGAGTGGGATGTTAATGATCCAACATCTGCT
GAGGGATTTACTGTGATATTTAACAAAGCTAGAGATGAGAAGAAAACAGGCGGCAAACCTGATTCACCTGGAAAAGTTGATGCACAGGGCAGGCCTGGAGCAAATCCTGC
CAAGGCACCGCCTGTAAGATATCATTCATAA
Protein sequenceShow/hide protein sequence
MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPPVRYHS