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Carg22456 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22456
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description40S ribosomal protein S28
Genome locationCarg_Chr03:799712..800366
RNA-Seq ExpressionCarg22456
SyntenyCarg22456
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0006508 - proteolysis (biological process)
GO:0030490 - maturation of SSU-rRNA (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
InterPro domainsIPR000289 - Ribosomal protein S28e
IPR012340 - Nucleic acid-binding, OB-fold
IPR028626 - Ribosomal protein S28e conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5747745.1 hypothetical protein HS088_TW05G00472 [Tripterygium wilfordii]4.6e-2471.43Show/hide
Query:  SSQVHRYLNSLELCAPRWPIGGLMIGLRWLIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        + ++ R    L LC        L + +   IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRLR
Subjt:  SSQVHRYLNSLELCAPRWPIGGLMIGLRWLIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

KAG6595421.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia]2.7e-2489.86Show/hide
Query:  LMIGLRWLIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        L+ G+   IKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  LMIGLRWLIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

KAG7027430.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]3.5e-2491.04Show/hide
Query:  IGLRWLIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        +G+   IKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  IGLRWLIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

KAG7033529.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]7.8e-48100Show/hide
Query:  MSVVPTLPSSQVHRYLNSLELCAPRWPIGGLMIGLRWLIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        MSVVPTLPSSQVHRYLNSLELCAPRWPIGGLMIGLRWLIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MSVVPTLPSSQVHRYLNSLELCAPRWPIGGLMIGLRWLIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

XP_022928637.1 40S ribosomal protein S28-1-like [Cucurbita moschata]6.0e-24100Show/hide
Query:  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

TrEMBL top hitse value%identityAlignment
A0A4Y1RT29 Uncharacterized protein3.8e-2484.51Show/hide
Query:  IGGLMIGLRWLIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL
        +G L++G+   IKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARR+
Subjt:  IGGLMIGLRWLIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL

A0A6J1E226 40S ribosomal protein S28-1-like isoform X23.8e-2492.42Show/hide
Query:  GLRWLIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        G+   IKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  GLRWLIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

A0A6J1E336 40S ribosomal protein S28-1-like isoform X13.8e-2492.42Show/hide
Query:  GLRWLIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        G+   IKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  GLRWLIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

A0A6J1EKH1 40S ribosomal protein S28-1-like2.9e-24100Show/hide
Query:  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

A0A7J7DN03 Uncharacterized protein2.2e-2471.43Show/hide
Query:  SSQVHRYLNSLELCAPRWPIGGLMIGLRWLIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        + ++ R    L LC        L + +   IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRLR
Subjt:  SSQVHRYLNSLELCAPRWPIGGLMIGLRWLIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

SwissProt top hitse value%identityAlignment
P34789 40S ribosomal protein S28-25.9e-2288.52Show/hide
Query:  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        IKHA+VVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREARRLR
Subjt:  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

P46302 40S ribosomal protein S283.1e-2391.8Show/hide
Query:  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        +K A+VVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESEREARRLR
Subjt:  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Q6PBK3 40S ribosomal protein S284.2e-2080.33Show/hide
Query:  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRLR
Subjt:  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Q90YP3 40S ribosomal protein S284.2e-2080.33Show/hide
Query:  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRLR
Subjt:  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Q9SR73 40S ribosomal protein S28-11.5e-2291.8Show/hide
Query:  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        IKHA+VVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Arabidopsis top hitse value%identityAlignment
AT3G10090.1 Nucleic acid-binding, OB-fold-like protein1.1e-2391.8Show/hide
Query:  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        IKHA+VVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

AT5G03850.1 Nucleic acid-binding, OB-fold-like protein1.1e-2391.8Show/hide
Query:  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        IKHA+VVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

AT5G64140.1 ribosomal protein S284.2e-2388.52Show/hide
Query:  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        IKHA+VVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREARRLR
Subjt:  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTTGTACCTACGCTTCCTAGTTCCCAAGTCCATCGGTACTTGAATTCTTTGGAACTTTGTGCCCCAAGATGGCCTATAGGAGGCCTCATGATTGGCTTGAGATG
GTTAATCAAACATGCTCTGGTGGTCAAAGTAATGGGCCGAACTGGATCGAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTCGACGATCAGAATCGTTACATCATGA
GGAATGTCAAGGGACCTGTAAGGGAAGGTGACATTCTTACCCTTCTGGAGTCTGAGAGAGAAGCAAGGAGATTGCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTTGTACCTACGCTTCCTAGTTCCCAAGTCCATCGGTACTTGAATTCTTTGGAACTTTGTGCCCCAAGATGGCCTATAGGAGGCCTCATGATTGGCTTGAGATG
GTTAATCAAACATGCTCTGGTGGTCAAAGTAATGGGCCGAACTGGATCGAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTCGACGATCAGAATCGTTACATCATGA
GGAATGTCAAGGGACCTGTAAGGGAAGGTGACATTCTTACCCTTCTGGAGTCTGAGAGAGAAGCAAGGAGATTGCGTTGA
Protein sequenceShow/hide protein sequence
MSVVPTLPSSQVHRYLNSLELCAPRWPIGGLMIGLRWLIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR