| GenBank top hits | e value | %identity | Alignment |
|---|
| KAG7020284.1 RNA polymerase sigma factor sigC, partial [Cucurbita argyrosperma subsp. argyrosperma] | 7.9e-260 | 100 | Show/hide |
Query: MDKNPAKDIVSGVYLHHVRWILYVITILITLISQINNKARPQGHLHYGLKCTRPSRVDDNFSAGTSLPTGKVSSFGMLMKNIDVLEETFAESGMLSLGRD
MDKNPAKDIVSGVYLHHVRWILYVITILITLISQINNKARPQGHLHYGLKCTRPSRVDDNFSAGTSLPTGKVSSFGMLMKNIDVLEETFAESGMLSLGRD
Subjt: MDKNPAKDIVSGVYLHHVRWILYVITILITLISQINNKARPQGHLHYGLKCTRPSRVDDNFSAGTSLPTGKVSSFGMLMKNIDVLEETFAESGMLSLGRD
Query: GQNDLAIEDGGYHNVNPKTDGQNDDVVVYSGKRAGRRSVKERAVDNADKVASQLLTTRAGKEKFRNSSIFSRKRAFKRPNVARNEVEISTGVKVVANLER
GQNDLAIEDGGYHNVNPKTDGQNDDVVVYSGKRAGRRSVKERAVDNADKVASQLLTTRAGKEKFRNSSIFSRKRAFKRPNVARNEVEISTGVKVVANLER
Subjt: GQNDLAIEDGGYHNVNPKTDGQNDDVVVYSGKRAGRRSVKERAVDNADKVASQLLTTRAGKEKFRNSSIFSRKRAFKRPNVARNEVEISTGVKVVANLER
Query: IRETLEKETGKISSMSCWANAAGVDKKDLQKQLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIR
IRETLEKETGKISSMSCWANAAGVDKKDLQKQLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIR
Subjt: IRETLEKETGKISSMSCWANAAGVDKKDLQKQLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIR
Query: KLMSSVVARNSRGIQIPWSLTKAMNQIQKARKVLNNGSSRYSDDDIAKATGLPLAKVLAMRYGLVDFRPKSLEETGKLLQISKEWVRKIEKKAITKLKNE
KLMSSVVARNSRGIQIPWSLTKAMNQIQKARKVLNNGSSRYSDDDIAKATGLPLAKVLAMRYGLVDFRPKSLEETGKLLQISKEWVRKIEKKAITKLKNE
Subjt: KLMSSVVARNSRGIQIPWSLTKAMNQIQKARKVLNNGSSRYSDDDIAKATGLPLAKVLAMRYGLVDFRPKSLEETGKLLQISKEWVRKIEKKAITKLKNE
Query: ETNLQQAKEAKVHTKKATVTRNHDELFISQSSTFRAKNSVQFHTQTHQPTASSLDLMNYPG
ETNLQQAKEAKVHTKKATVTRNHDELFISQSSTFRAKNSVQFHTQTHQPTASSLDLMNYPG
Subjt: ETNLQQAKEAKVHTKKATVTRNHDELFISQSSTFRAKNSVQFHTQTHQPTASSLDLMNYPG
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| XP_023002339.1 RNA polymerase sigma factor sigC-like isoform X1 [Cucurbita maxima] | 6.4e-169 | 93.87 | Show/hide |
Query: ISQINNKARPQGHLHYGLKCTRPSRVDDNFSAGTSLPTGKVSSFGMLMKNIDVLEETFAESGMLSLGRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSG
+ +INNKARP GHLHYGLK TRPSRVD+NFSAGTSLPTGK SSFGMLMKNIDVLEETFAESGMLS+GRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSG
Subjt: ISQINNKARPQGHLHYGLKCTRPSRVDDNFSAGTSLPTGKVSSFGMLMKNIDVLEETFAESGMLSLGRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSG
Query: KRAGRRSVKERAVDNADKVASQLLTTRAGKEKFRNSSIFSRKRAFKRPNVARNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQK
KRAGRRSVKERAVDNADKVASQLLTTRA KEKFRNSSIFSRKRAFKR VA+NEVEISTGVKVVANLERIRETLEK TGKISSMSCWANAAGVD KDLQ
Subjt: KRAGRRSVKERAVDNADKVASQLLTTRAGKEKFRNSSIFSRKRAFKRPNVARNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQK
Query: QLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKAR
QLQFGWFCQDELLRTTNSLVRFLSKKY+CSGLPMEDLVQAGAVGVLQGVERFDPKRGF STYIHYWIRK MSSVVARNSR IQIPWSLTKAMNQIQKAR
Subjt: QLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKAR
Query: KVLNNGSSRYSDDDIAKATGLPLAKV
KVLNNGSSRYSDDDIAKATGLPLAKV
Subjt: KVLNNGSSRYSDDDIAKATGLPLAKV
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| XP_023002340.1 RNA polymerase sigma factor sigC-like isoform X2 [Cucurbita maxima] | 3.8e-169 | 90.17 | Show/hide |
Query: ISQINNKARPQGHLHYGLKCTRPSRVDDNFSAGTSLPTGKVSSFGMLMKNIDVLEETFAESGMLSLGRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSG
+ +INNKARP GHLHYGLK TRPSRVD+NFSAGTSLPTGK SSFGMLMKNIDVLEETFAESGMLS+GRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSG
Subjt: ISQINNKARPQGHLHYGLKCTRPSRVDDNFSAGTSLPTGKVSSFGMLMKNIDVLEETFAESGMLSLGRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSG
Query: KRAGRRSVKERAVDNADKVASQLLTTRAGKEKFRNSSIFSRKRAFKRPNVARNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQK
KRAGRRSVKERAVDNADKVASQLLTTRA KEKFRNSSIFSRKRAFKR VA+NEVEISTGVKVVANLERIRETLEK TGKISSMSCWANAAGVD KDLQ
Subjt: KRAGRRSVKERAVDNADKVASQLLTTRAGKEKFRNSSIFSRKRAFKRPNVARNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQK
Query: QLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKAR
QLQFGWFCQDELLRTTNSLVRFLSKKY+CSGLPMEDLVQAGAVGVLQGVERFDPKRGF STYIHYWIRK MSSVVARNSR IQIPWSLTKAMNQIQKAR
Subjt: QLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKAR
Query: KVLNNGSSRYSDDDIAKATGLPLAKVLAMRYGLVDFRPKSLEETGK
KVLNNGSSRYSDDDIAKATGLPLAK A D +S EET K
Subjt: KVLNNGSSRYSDDDIAKATGLPLAKVLAMRYGLVDFRPKSLEETGK
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| XP_023002341.1 RNA polymerase sigma factor sigC-like isoform X3 [Cucurbita maxima] | 3.8e-169 | 93.58 | Show/hide |
Query: ISQINNKARPQGHLHYGLKCTRPSRVDDNFSAGTSLPTGKVSSFGMLMKNIDVLEETFAESGMLSLGRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSG
+ +INNKARP GHLHYGLK TRPSRVD+NFSAGTSLPTGK SSFGMLMKNIDVLEETFAESGMLS+GRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSG
Subjt: ISQINNKARPQGHLHYGLKCTRPSRVDDNFSAGTSLPTGKVSSFGMLMKNIDVLEETFAESGMLSLGRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSG
Query: KRAGRRSVKERAVDNADKVASQLLTTRAGKEKFRNSSIFSRKRAFKRPNVARNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQK
KRAGRRSVKERAVDNADKVASQLLTTRA KEKFRNSSIFSRKRAFKR VA+NEVEISTGVKVVANLERIRETLEK TGKISSMSCWANAAGVD KDLQ
Subjt: KRAGRRSVKERAVDNADKVASQLLTTRAGKEKFRNSSIFSRKRAFKRPNVARNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQK
Query: QLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKAR
QLQFGWFCQDELLRTTNSLVRFLSKKY+CSGLPMEDLVQAGAVGVLQGVERFDPKRGF STYIHYWIRK MSSVVARNSR IQIPWSLTKAMNQIQKAR
Subjt: QLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKAR
Query: KVLNNGSSRYSDDDIAKATGLPLAKVL
KVLNNGSSRYSDDDIAKATGLPLAKV+
Subjt: KVLNNGSSRYSDDDIAKATGLPLAKVL
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| XP_023538504.1 RNA polymerase sigma factor sigC-like isoform X1 [Cucurbita pepo subsp. pepo] | 1.8e-158 | 90.12 | Show/hide |
Query: QINNKARPQGHLHYGLKCTRPSRVDDNFSAGTSLPTGKVSSFGMLMKNIDVLEETFAESGMLSLGRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSGKR
+INNKARP GHLHYGLKCTRPSRVDDNFSAGTSLPTGK SSFGMLMKNIDVLEETFAESGMLSLGRDGQNDLAIEDGGYHNV+PKTDGQNDDVVVYSGKR
Subjt: QINNKARPQGHLHYGLKCTRPSRVDDNFSAGTSLPTGKVSSFGMLMKNIDVLEETFAESGMLSLGRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSGKR
Query: AGRRSVKERAVDNADKVASQLLTTRAGKEKFRNSSIFSRKRAFKRPNVARNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQKQL
AGRRSVK+RAVDNADKVASQ LTTRA KEKFRNSSIFSRKRAFKRP VARNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVD KDLQKQL
Subjt: AGRRSVKERAVDNADKVASQLLTTRAGKEKFRNSSIFSRKRAFKRPNVARNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQKQL
Query: QFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKARKV
QFGWFCQDELLRTTNSLVRFLSKKY+CSGLPMEDLVQAGAVGVLQGVERFDPKRGF STYIHYWIRK MSSVVARNSR + + + RK
Subjt: QFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKARKV
Query: LNNGSSRYSDDDIAKATGLPLAKV
LNNGSSRYSDDDIAKATGLPLAKV
Subjt: LNNGSSRYSDDDIAKATGLPLAKV
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7VCX9 RNA polymerase sigma factor sigC | 2.2e-143 | 61.51 | Show/hide |
Query: QINNKARPQGHLHYGLKCTRPSRVDDNFSAGTSLPTGKVSSFGMLMKNIDVLEETFAESGMLSLGRD----------------------------GQNDL
++N+ A+ LHYG+K TRPS+V+DNFS+ TS+PTGK S FG+LM+N+DVLEETFAESGMLSL RD +DL
Subjt: QINNKARPQGHLHYGLKCTRPSRVDDNFSAGTSLPTGKVSSFGMLMKNIDVLEETFAESGMLSLGRD----------------------------GQNDL
Query: AIEDGGYHNVNPKTDGQNDDVVVYSGKRAGRRSVKERAVDNADKVASQLLTTRAGKEKFRNSSIFSRKRAF----KRPNVARNEVEISTGVKVVANLERI
+EDG HNVN KT+ QN DV VYSGKRAGRRSVK+RA+DNADKVAS+ L TRA KEK +S+IFSRK++ +R VARNE E+STG+KVVANLERI
Subjt: AIEDGGYHNVNPKTDGQNDDVVVYSGKRAGRRSVKERAVDNADKVASQLLTTRAGKEKFRNSSIFSRKRAF----KRPNVARNEVEISTGVKVVANLERI
Query: RETLEKETGKISSMSCWANAAGVDKKDLQKQLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRK
RETLEKE+G+I+SMSCWA AA VD KDLQKQLQFGWFC+DELLR+TNSLV FL+KKY+CSGLPMEDLVQAGA+GVLQGVERFDPKRGF STYI YWIRK
Subjt: RETLEKETGKISSMSCWANAAGVDKKDLQKQLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRK
Query: LMSSVVARNSRGIQIPWSLTKAMNQIQKARKVLNNGSSRYSDDDIAKATGLPLAK---------------------------------------------
MS VVARNSRGIQIPWSLTKA+NQIQKARKVLN G RYSDDDIA+ATGLPLAK
Subjt: LMSSVVARNSRGIQIPWSLTKAMNQIQKARKVLNNGSSRYSDDDIAKATGLPLAK---------------------------------------------
Query: -------------------VLAMRYGLVDFRPKSLEETGKLLQISKEWVRKIEKKAITKLKNEET
VL +RYGL+DF+PKSLEE GKLL +SKEWVRKIEKKA+TKLKNEET
Subjt: -------------------VLAMRYGLVDFRPKSLEETGKLLQISKEWVRKIEKKAITKLKNEET
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| A0A6J1BRC1 RNA polymerase sigma factor sigC isoform X1 | 1.8e-145 | 61.88 | Show/hide |
Query: QINNKARPQGHLHYGLKCTRPSRVDDNFSAGTSLPTGKVSSFGMLMKNIDVLEETFAESGMLSLGRD------------------------------GQN
+IN++ARP H HYG+K T PS+++DNFS+ TSLPTGK S FGMLM+N+DVLEE F ESGMLSL RD +
Subjt: QINNKARPQGHLHYGLKCTRPSRVDDNFSAGTSLPTGKVSSFGMLMKNIDVLEETFAESGMLSLGRD------------------------------GQN
Query: DLAIEDGGYHNVNPKTDGQNDDVVVYSGKRAGRRSVKERAVDNADKVASQLLTTRAGKEKFRNSSIFSRKRAF----KRPNVARNEVEISTGVKVVANLE
DL IEDGG HNVN KTD QNDD++VYSGK+ GRRS+KERA D ADKVASQ T A KEKF NS+ F RKR F +R VARNE E+STGVKVVANLE
Subjt: DLAIEDGGYHNVNPKTDGQNDDVVVYSGKRAGRRSVKERAVDNADKVASQLLTTRAGKEKFRNSSIFSRKRAF----KRPNVARNEVEISTGVKVVANLE
Query: RIRETLEKETGKISSMSCWANAAGVDKKDLQKQLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWI
RIRETLEKE+ K +SMSCWA+AAG+D KDL KQLQFGWFCQ+ELLR+TNSLV FL+KKY+C+GLPMEDLVQAGA+GVLQGVERFDPKRGF STYI YWI
Subjt: RIRETLEKETGKISSMSCWANAAGVDKKDLQKQLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWI
Query: RKLMSSVVARNSRGIQIPWSLTKAMNQIQKARKVLNNGSSRYSDDDIAKATGLPLAK-------------------------------------------
RK MS VVARNSRGIQIPWSLTKA+NQIQKARK LNNGS RYSDDDIAKATGLPLAK
Subjt: RKLMSSVVARNSRGIQIPWSLTKAMNQIQKARKVLNNGSSRYSDDDIAKATGLPLAK-------------------------------------------
Query: ---------------------VLAMRYGLVDFRPKSLEETGKLLQISKEWVRKIEKKAITKLKNEET
VLA+RYGL DF+PKSLEE GKLL +SKEWVRKIEKKA+TKLKNEET
Subjt: ---------------------VLAMRYGLVDFRPKSLEETGKLLQISKEWVRKIEKKAITKLKNEET
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| A0A6J1KL20 RNA polymerase sigma factor sigC-like isoform X3 | 1.8e-169 | 93.58 | Show/hide |
Query: ISQINNKARPQGHLHYGLKCTRPSRVDDNFSAGTSLPTGKVSSFGMLMKNIDVLEETFAESGMLSLGRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSG
+ +INNKARP GHLHYGLK TRPSRVD+NFSAGTSLPTGK SSFGMLMKNIDVLEETFAESGMLS+GRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSG
Subjt: ISQINNKARPQGHLHYGLKCTRPSRVDDNFSAGTSLPTGKVSSFGMLMKNIDVLEETFAESGMLSLGRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSG
Query: KRAGRRSVKERAVDNADKVASQLLTTRAGKEKFRNSSIFSRKRAFKRPNVARNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQK
KRAGRRSVKERAVDNADKVASQLLTTRA KEKFRNSSIFSRKRAFKR VA+NEVEISTGVKVVANLERIRETLEK TGKISSMSCWANAAGVD KDLQ
Subjt: KRAGRRSVKERAVDNADKVASQLLTTRAGKEKFRNSSIFSRKRAFKRPNVARNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQK
Query: QLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKAR
QLQFGWFCQDELLRTTNSLVRFLSKKY+CSGLPMEDLVQAGAVGVLQGVERFDPKRGF STYIHYWIRK MSSVVARNSR IQIPWSLTKAMNQIQKAR
Subjt: QLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKAR
Query: KVLNNGSSRYSDDDIAKATGLPLAKVL
KVLNNGSSRYSDDDIAKATGLPLAKV+
Subjt: KVLNNGSSRYSDDDIAKATGLPLAKVL
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| A0A6J1KNN4 RNA polymerase sigma factor sigC-like isoform X2 | 1.8e-169 | 90.17 | Show/hide |
Query: ISQINNKARPQGHLHYGLKCTRPSRVDDNFSAGTSLPTGKVSSFGMLMKNIDVLEETFAESGMLSLGRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSG
+ +INNKARP GHLHYGLK TRPSRVD+NFSAGTSLPTGK SSFGMLMKNIDVLEETFAESGMLS+GRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSG
Subjt: ISQINNKARPQGHLHYGLKCTRPSRVDDNFSAGTSLPTGKVSSFGMLMKNIDVLEETFAESGMLSLGRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSG
Query: KRAGRRSVKERAVDNADKVASQLLTTRAGKEKFRNSSIFSRKRAFKRPNVARNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQK
KRAGRRSVKERAVDNADKVASQLLTTRA KEKFRNSSIFSRKRAFKR VA+NEVEISTGVKVVANLERIRETLEK TGKISSMSCWANAAGVD KDLQ
Subjt: KRAGRRSVKERAVDNADKVASQLLTTRAGKEKFRNSSIFSRKRAFKRPNVARNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQK
Query: QLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKAR
QLQFGWFCQDELLRTTNSLVRFLSKKY+CSGLPMEDLVQAGAVGVLQGVERFDPKRGF STYIHYWIRK MSSVVARNSR IQIPWSLTKAMNQIQKAR
Subjt: QLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKAR
Query: KVLNNGSSRYSDDDIAKATGLPLAKVLAMRYGLVDFRPKSLEETGK
KVLNNGSSRYSDDDIAKATGLPLAK A D +S EET K
Subjt: KVLNNGSSRYSDDDIAKATGLPLAKVLAMRYGLVDFRPKSLEETGK
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| A0A6J1KQ64 RNA polymerase sigma factor sigC-like isoform X1 | 3.1e-169 | 93.87 | Show/hide |
Query: ISQINNKARPQGHLHYGLKCTRPSRVDDNFSAGTSLPTGKVSSFGMLMKNIDVLEETFAESGMLSLGRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSG
+ +INNKARP GHLHYGLK TRPSRVD+NFSAGTSLPTGK SSFGMLMKNIDVLEETFAESGMLS+GRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSG
Subjt: ISQINNKARPQGHLHYGLKCTRPSRVDDNFSAGTSLPTGKVSSFGMLMKNIDVLEETFAESGMLSLGRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSG
Query: KRAGRRSVKERAVDNADKVASQLLTTRAGKEKFRNSSIFSRKRAFKRPNVARNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQK
KRAGRRSVKERAVDNADKVASQLLTTRA KEKFRNSSIFSRKRAFKR VA+NEVEISTGVKVVANLERIRETLEK TGKISSMSCWANAAGVD KDLQ
Subjt: KRAGRRSVKERAVDNADKVASQLLTTRAGKEKFRNSSIFSRKRAFKRPNVARNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQK
Query: QLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKAR
QLQFGWFCQDELLRTTNSLVRFLSKKY+CSGLPMEDLVQAGAVGVLQGVERFDPKRGF STYIHYWIRK MSSVVARNSR IQIPWSLTKAMNQIQKAR
Subjt: QLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKAR
Query: KVLNNGSSRYSDDDIAKATGLPLAKV
KVLNNGSSRYSDDDIAKATGLPLAKV
Subjt: KVLNNGSSRYSDDDIAKATGLPLAKV
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| O22056 RNA polymerase sigma factor sigB | 4.8e-34 | 29.21 | Show/hide |
Query: RNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQKQLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVER
R E E+S G++ + LER++ L + +G+ + + WA+AAGVD+K L++++ G C+D+++++ LV ++K YQ +G+ ++DLVQ G G+++G E+
Subjt: RNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQKQLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVER
Query: FDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKARKVLNNGSSRY-SDDDIAKATGLPLAKVLAM---------------------
FD +GF STY H+WI++ + ++ SR I++P+ + +A ++++ARK L + + ++ +++IA+ATGL + +++A+
Subjt: FDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKARKVLNNGSSRY-SDDDIAKATGLPLAKVLAM---------------------
Query: -------------------------------------------RYGLVDFRPKSLEETGKLLQISKEWVRKIEKKAITKLKNEETN--LQQ
R+G+ D R K+L+E G+++ +S+E VR+IE A KLKN++ N LQQ
Subjt: -------------------------------------------RYGLVDFRPKSLEETGKLLQISKEWVRKIEKKAITKLKNEETN--LQQ
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| O24621 RNA polymerase sigma factor sigC | 2.1e-61 | 36.05 | Show/hide |
Query: SAGTSLPTGKVSSFGMLMKNIDVLEETFA--------ESGMLSLGRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSGKR------AGRRSVKERA----
SA S + + + +L KN+ LEETF ML +G+ G +L + + T +D + + RR VK++A
Subjt: SAGTSLPTGKVSSFGMLMKNIDVLEETFA--------ESGMLSLGRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSGKR------AGRRSVKERA----
Query: --VDNADKVASQLLTTRAGKEKFRNSSIFSR-----KRAFKRPNVARNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQKQLQFG
+N D+ + + G N+ R K KR ++RNE E+STGVK+VA++ERIR LE+E+GK++S+SCWA AAG+++K L + L +G
Subjt: --VDNADKVASQLLTTRAGKEKFRNSSIFSR-----KRAFKRPNVARNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQKQLQFG
Query: WFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKARKVL--
W+C+DEL+++T SLV FL++ Y+ G+ EDL+QAG VGVLQG ERFD RG+ STY+ YWIRK MS++V+R++RG+ IP S+ + +N IQKARK L
Subjt: WFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKARKVL--
Query: NNGSSRYSDDDIAKATGLPLAK----------------------------------------------------------------VLAMRYGLVDFRPK
++G +D++IAK TG + K V+ +RYGL D+RPK
Subjt: NNGSSRYSDDDIAKATGLPLAK----------------------------------------------------------------VLAMRYGLVDFRPK
Query: SLEETGKLLQISKEWVRKIEKKAITKLKNE
SLEE GKLL++SKEW+RKIE++A+ KL+++
Subjt: SLEETGKLLQISKEWVRKIEKKAITKLKNE
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| P26683 RNA polymerase sigma factor SigA | 9.1e-25 | 25.86 | Show/hide |
Query: KVASQLLTTRAGKEKFRNSSIFSRKRAFKRPNVAR--NEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQKQLQFGWFCQDELLRT
K A T++ K+ + SI + R + R E+E++ + + LER+RE L ++ + S WA A + + +L G +D+++++
Subjt: KVASQLLTTRAGKEKFRNSSIFSRKRAFKRPNVAR--NEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQKQLQFGWFCQDELLRT
Query: TNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKARKVLNNGSSRYSDDD-
LV ++KKY GL +DL+Q G++G+++ E+FD ++G+ STY +WIR+ ++ +A SR I++P L + +++I+K K+L+ R ++
Subjt: TNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKARKVLNNGSSRYSDDD-
Query: --------------IAKATGLPLA-------------------------------------------------KVLAMRYGLVDFRPKSLEETGKLLQIS
IAK+ LP++ VL +RYGL D R K+LEE G++ ++
Subjt: --------------IAKATGLPLA-------------------------------------------------KVLAMRYGLVDFRPKSLEETGKLLQIS
Query: KEWVRKIEKKAITKLKNEETN
+E +R+IE KA+ KL++ N
Subjt: KEWVRKIEKKAITKLKNEETN
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| P38023 RNA polymerase sigma factor SigA1 | 1.2e-24 | 25.68 | Show/hide |
Query: AVDNADKVASQLLTTRAGKEKFRNS------SIFSRKRAFKRPNVARNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQKQLQFG
A+D+ D V K K R + ++ ++ R A E+E++ + + LERIR+ L ++ ++ S + WA A + +++L G
Subjt: AVDNADKVASQLLTTRAGKEKFRNS------SIFSRKRAFKRPNVARNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQKQLQFG
Query: WFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKARKVLNN
+D+++++ LV ++KKY GL +DL+Q G++G+++ E+FD ++G+ STY +WIR+ ++ +A SR I++P L + +++I+K K+L+
Subjt: WFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKARKVLNN
Query: GSSRYSDDD---------------IAKATGLPLA-------------------------------------------------KVLAMRYGLVDFRPKSL
R ++ IAK+ LP++ VL +RYGL D R K+L
Subjt: GSSRYSDDD---------------IAKATGLPLA-------------------------------------------------KVLAMRYGLVDFRPKSL
Query: EETGKLLQISKEWVRKIEKKAITKLKNEETN
EE G+L +++E +R+IE KA+ KL++ N
Subjt: EETGKLLQISKEWVRKIEKKAITKLKNEETN
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| Q31QG5 RNA polymerase sigma factor SigA3 | 5.5e-22 | 26.48 | Show/hide |
Query: EVEISTGVKVVANLERIRETLEKETG-KISSMSCWANAAGVDKKDLQKQLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERF
EV + V+ L+ +R+TL+ E G + S WA AAG+ ++L++Q G + +++ LV ++KKY + + DL+Q G +G+ +GVE+F
Subjt: EVEISTGVKVVANLERIRETLEKETG-KISSMSCWANAAGVDKKDLQKQLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERF
Query: DPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKARKVLNNGSSRYSD-DDIAKATGL--------------PLA-------------
DP +G+ STY ++WIR+ ++ +A +R I++P +T+ +N+I+K ++ L+ R + ++A A L PL+
Subjt: DPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKARKVLNNGSSRYSD-DDIAKATGL--------------PLA-------------
Query: ------------------------------------KVLAMRYGLVDFRPKSLEETGKLLQISKEWVRKIEKKAITKLKNEETNLQQ
+V+A+RYGL D + +L G LQIS+E VR++E++A+ L+ + +Q+
Subjt: ------------------------------------KVLAMRYGLVDFRPKSLEETGKLLQISKEWVRKIEKKAITKLKNEETNLQQ
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G08540.1 RNApolymerase sigma subunit 2 | 3.4e-35 | 29.21 | Show/hide |
Query: RNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQKQLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVER
R E E+S G++ + LER++ L + +G+ + + WA+AAGVD+K L++++ G C+D+++++ LV ++K YQ +G+ ++DLVQ G G+++G E+
Subjt: RNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQKQLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVER
Query: FDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKARKVLNNGSSRY-SDDDIAKATGLPLAKVLAM---------------------
FD +GF STY H+WI++ + ++ SR I++P+ + +A ++++ARK L + + ++ +++IA+ATGL + +++A+
Subjt: FDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKARKVLNNGSSRY-SDDDIAKATGLPLAKVLAM---------------------
Query: -------------------------------------------RYGLVDFRPKSLEETGKLLQISKEWVRKIEKKAITKLKNEETN--LQQ
R+G+ D R K+L+E G+++ +S+E VR+IE A KLKN++ N LQQ
Subjt: -------------------------------------------RYGLVDFRPKSLEETGKLLQISKEWVRKIEKKAITKLKNEETN--LQQ
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| AT1G64860.1 sigma factor A | 1.4e-17 | 29.65 | Show/hide |
Query: VEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQKQLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDP
V +S +K L+ + L+ G S A + + + +LQ L +++L + LV ++++Y G M DLVQ G +G+L+G+E+FD
Subjt: VEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQKQLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDP
Query: KRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKARKVLNNGSSRYSDDDIAKATGLPLAKV
+GF +STY+++WIR+ +S + NSR +++P L + + I+ A+ L S D IA++ + KV
Subjt: KRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKARKVLNNGSSRYSDDDIAKATGLPLAKV
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| AT2G36990.1 RNApolymerase sigma-subunit F | 2.5e-22 | 23.26 | Show/hide |
Query: RRSVKERAVDNADKVASQLLTTRAGKEKFRNS---SIFSRKRAFKRPNVARNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQKQ
RR+ K VD+ V + + K+ N +F K+ A+ E E+ + ++ + LE+++ LE + G ++ WA A G+ L+
Subjt: RRSVKERAVDNADKVASQLLTTRAGKEKFRNS---SIFSRKRAFKRPNVARNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQKQ
Query: LQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKARK
+ G +++L+ LV ++K+YQ GL +DL+Q G++G+++ VE+F P+ G +TY ++WIR+ + + +NSR I++P ++ + ++ +ARK
Subjt: LQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKARK
Query: V-LNNGSSRYSDDDIAKATGL--------------PLA--------------------------------------------------KVLAMRYGLVDF
+ G+ R S +++A G+ PL+ +++ +R+G+
Subjt: V-LNNGSSRYSDDDIAKATGL--------------PLA--------------------------------------------------KVLAMRYGLVDF
Query: RPKSLEETGKLLQISKEWVRKIEKKAITKLK
+ +SL E G++ +SKE VR++E +A+ +LK
Subjt: RPKSLEETGKLLQISKEWVRKIEKKAITKLK
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| AT3G53920.1 RNApolymerase sigma-subunit C | 1.5e-62 | 36.05 | Show/hide |
Query: SAGTSLPTGKVSSFGMLMKNIDVLEETFA--------ESGMLSLGRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSGKR------AGRRSVKERA----
SA S + + + +L KN+ LEETF ML +G+ G +L + + T +D + + RR VK++A
Subjt: SAGTSLPTGKVSSFGMLMKNIDVLEETFA--------ESGMLSLGRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSGKR------AGRRSVKERA----
Query: --VDNADKVASQLLTTRAGKEKFRNSSIFSR-----KRAFKRPNVARNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQKQLQFG
+N D+ + + G N+ R K KR ++RNE E+STGVK+VA++ERIR LE+E+GK++S+SCWA AAG+++K L + L +G
Subjt: --VDNADKVASQLLTTRAGKEKFRNSSIFSR-----KRAFKRPNVARNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQKQLQFG
Query: WFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKARKVL--
W+C+DEL+++T SLV FL++ Y+ G+ EDL+QAG VGVLQG ERFD RG+ STY+ YWIRK MS++V+R++RG+ IP S+ + +N IQKARK L
Subjt: WFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKARKVL--
Query: NNGSSRYSDDDIAKATGLPLAK----------------------------------------------------------------VLAMRYGLVDFRPK
++G +D++IAK TG + K V+ +RYGL D+RPK
Subjt: NNGSSRYSDDDIAKATGLPLAK----------------------------------------------------------------VLAMRYGLVDFRPK
Query: SLEETGKLLQISKEWVRKIEKKAITKLKNE
SLEE GKLL++SKEW+RKIE++A+ KL+++
Subjt: SLEETGKLLQISKEWVRKIEKKAITKLKNE
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| AT5G13730.1 sigma factor 4 | 2.9e-18 | 26.07 | Show/hide |
Query: EVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQKQLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFD
EV++ +K A LE + ++E E +S + A+ G K+ + L ++++ R LV ++ YQ GL ++DL+Q G++G+L+G ERFD
Subjt: EVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQKQLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFD
Query: PKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKARKVLNNGSSRY-SDDDIAKATGLPL-----------------------------
P RG+ LSTY+++WI++ + +A SR +++P S+ + ++ +A VL R S ++IA+ L +
Subjt: PKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKARKVLNNGSSRY-SDDDIAKATGLPL-----------------------------
Query: -----------------------------------AKVLAMRYGLVDFRPKSLEETGKLLQISKEWVRKIEKKAITKLKN
++VL + +GL P S EE GK L++S+E VR+I A+ KL+N
Subjt: -----------------------------------AKVLAMRYGLVDFRPKSLEETGKLLQISKEWVRKIEKKAITKLKN
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