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Carg22503 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22503
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCHCH domain-containing protein
Genome locationCarg_Chr12:1201790..1203662
RNA-Seq ExpressionCarg22503
SyntenyCarg22503
Gene Ontology termsGO:0007005 - mitochondrion organization (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005739 - mitochondrion (cellular component)
InterPro domainsIPR009069 - Cysteine alpha-hairpin motif superfamily
IPR010625 - CHCH


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585350.1 hypothetical protein SDJN03_18083, partial [Cucurbita argyrosperma subsp. sororia]8.6e-7299.3Show/hide
Query:  MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSE
        MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIA+GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSE
Subjt:  MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSE

Query:  TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
        TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
Subjt:  TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

KAG7020260.1 hypothetical protein SDJN02_16943, partial [Cucurbita argyrosperma subsp. argyrosperma]3.9e-72100Show/hide
Query:  MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSE
        MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSE
Subjt:  MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSE

Query:  TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
        TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
Subjt:  TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

XP_022951313.1 coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-like [Cucurbita moschata]5.6e-7198.6Show/hide
Query:  MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSE
        MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIA+GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGS 
Subjt:  MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSE

Query:  TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
        TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
Subjt:  TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

XP_023001881.1 uncharacterized protein C6C3.02c-like [Cucurbita maxima]2.8e-7097.9Show/hide
Query:  MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSE
        MPRRSSGGRSASRPAPRAPVRNPPPPAHSAP PAPVQGGGGGSMLGGLGATIA+GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSS TPIANNPGGSE
Subjt:  MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSE

Query:  TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
        TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
Subjt:  TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

XP_023537001.1 uncharacterized protein C6C3.02c-like isoform X1 [Cucurbita pepo subsp. pepo]3.6e-7097.9Show/hide
Query:  MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSE
        MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLG LGATIA+GLAFGTGSAVAHRAVDAVMGPRVIQHE VDSSSSPTPIANNPGGSE
Subjt:  MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSE

Query:  TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
        TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
Subjt:  TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

TrEMBL top hitse value%identityAlignment
A0A0A0LNY2 CHCH domain-containing protein1.0e-5782.64Show/hide
Query:  MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTP-IANNPGGS
        MPRRSSGGRSASRPAPRAP+RNPP PA  AP PAPVQGGGGGSMLGGLGATIA+G+AFGTGSAVAHRAVDAVMGPR IQHE VDSS+S  P +A+N GGS
Subjt:  MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTP-IANNPGGS

Query:  ETCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
        + C VQSK+F+DCLNHYG+DI KCQFYLDML+ECRR SGSVLGA
Subjt:  ETCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

A0A6J1GHD7 coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-like2.7e-7198.6Show/hide
Query:  MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSE
        MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIA+GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGS 
Subjt:  MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSE

Query:  TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
        TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
Subjt:  TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

A0A6J1HDK4 coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial2.6e-5883.45Show/hide
Query:  MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSS--SSPTPIANNPGG
        MPRRSSGGRSASRPAPRAP RN P PAHSAP PAPVQGGGGGSMLGGLGATIA+G+AFGTGSAVAHRAVDAVMGPRVIQHE VDSS  SS   +A+NPGG
Subjt:  MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSS--SSPTPIANNPGG

Query:  SETCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
        S+ C VQSK+F+DCLNHYG+DI KCQFYLDML+ECR+ SGSVLGA
Subjt:  SETCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

A0A6J1K966 coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-like4.9e-5782.76Show/hide
Query:  MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSS--SSPTPIANNPGG
        MPRRSSGGRSASRPAPRAP RN P PA+SAP PAPVQGGGGGSMLGGLGATIA+G+AFGTGSAVAHRAVDAVMGPRVIQHE VDSS  SS   +A NPGG
Subjt:  MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSS--SSPTPIANNPGG

Query:  SETCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
        S+ C VQSK+F+DCLNHYG+DI KCQFYLDML+ECR+ SGSVLGA
Subjt:  SETCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

A0A6J1KJW6 uncharacterized protein C6C3.02c-like1.3e-7097.9Show/hide
Query:  MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSE
        MPRRSSGGRSASRPAPRAPVRNPPPPAHSAP PAPVQGGGGGSMLGGLGATIA+GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSS TPIANNPGGSE
Subjt:  MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSE

Query:  TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
        TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
Subjt:  TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G09570.1 Cox19-like CHCH family protein9.0e-3555.56Show/hide
Query:  MPRRSSGGRSASRPAPRAPVRNPPPPA-HSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGS
        MPR SSGGRS+ RP+  A  R+PPP + + AP PA  Q   GGS LG +GA+I EGLA+GTG+A  HR VD+VMGPR  +HE V    S  P A N    
Subjt:  MPRRSSGGRSASRPAPRAPVRNPPPPA-HSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGS

Query:  ETCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
          C + SKAF+DC+NH+G+DI KCQFY+DML EC++ SGSV+ A
Subjt:  ETCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

AT5G64400.1 CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625)9.9e-4261.11Show/hide
Query:  MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQ-GGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGS
        M RRSSGGRSA RP P A     P P H AP PAP Q  GGGG M  G+G+TIA+G+AFGTGSAVAHRAVD+VMGPR IQHE V+++S+    A +   S
Subjt:  MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQ-GGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGS

Query:  ETCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
         TC + +KAF+DC+  YG++I KCQFY+DML ECR+ SGSV+GA
Subjt:  ETCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

AT5G64400.2 BEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR:AT5G09570.1)4.5e-2659.82Show/hide
Query:  MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQ-GGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGS
        M RRSSGGRSA RP P A     P P H AP PAP Q  GGGG M  G+G+TIA+G+AFGTGSAVAHRAVD+VMGPR IQHE V+++S+    A +   S
Subjt:  MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQ-GGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGS

Query:  ETCTVQSKAFED
         TC + +KAF+D
Subjt:  ETCTVQSKAFED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGTCGGAGCTCTGGAGGACGATCTGCTTCCCGTCCTGCCCCGCGCGCTCCAGTTCGCAATCCTCCGCCGCCAGCTCATTCGGCTCCTTCACCCGCACCTGTACA
AGGTGGTGGAGGTGGGTCTATGCTGGGAGGACTTGGTGCCACCATTGCTGAAGGTTTGGCATTCGGTACTGGAAGTGCGGTCGCTCACAGGGCTGTCGATGCCGTAATGG
GTCCTCGAGTCATCCAACATGAGAACGTTGATTCATCATCTTCTCCAACACCTATAGCAAACAATCCGGGAGGTTCTGAAACTTGTACCGTTCAATCAAAGGCCTTTGAA
GATTGTCTGAACCACTATGGAAACGACATTGGGAAGTGCCAATTCTACTTGGATATGTTGAAGGAATGTCGCAGGGGCTCAGGTTCTGTTTTGGGTGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCGTCGGAGCTCTGGAGGACGATCTGCTTCCCGTCCTGCCCCGCGCGCTCCAGTTCGCAATCCTCCGCCGCCAGCTCATTCGGCTCCTTCACCCGCACCTGTACA
AGGTGGTGGAGGTGGGTCTATGCTGGGAGGACTTGGTGCCACCATTGCTGAAGGTTTGGCATTCGGTACTGGAAGTGCGGTCGCTCACAGGGCTGTCGATGCCGTAATGG
GTCCTCGAGTCATCCAACATGAGAACGTTGATTCATCATCTTCTCCAACACCTATAGCAAACAATCCGGGAGGTTCTGAAACTTGTACCGTTCAATCAAAGGCCTTTGAA
GATTGTCTGAACCACTATGGAAACGACATTGGGAAGTGCCAATTCTACTTGGATATGTTGAAGGAATGTCGCAGGGGCTCAGGTTCTGTTTTGGGTGCTTAA
Protein sequenceShow/hide protein sequence
MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSETCTVQSKAFE
DCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA