CuGenDBv2

Gene ID	Carg22510
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ribosomal RNA small subunit methyltransferase A
Genome location	Carg_Chr12:1142324..1142836
RNA-Seq Expression	Carg22510
Synteny	Carg22510
Gene Ontology terms	GO:0032259 - methylation (biological process) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0065096.1 Ribosomal RNA small subunit methyltransferase A [Cucumis melo var. makuwa]

4.9e-82

88.3

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Query:  MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWW WSGKHKEPR+SN GSA NASLDT  RE DTLKFPL NGANISSSSRRV+RKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAGKSCFFHACIWIGVGC
        GWSEPHGPGFQSDDE+DNSFAVLVPCYGR+YNDFVDETKNSILSA GNINDSFSAGKSCFF +   +GV C
Subjt:  GWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAGKSCFFHACIWIGVGC

KAG6585342.1 hypothetical protein SDJN03_18075, partial [Cucurbita argyrosperma subsp. sororia]

2.0e-83

99.35

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Query:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSA
        WSEPHGPGF SDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSA
Subjt:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSA

KAG7020253.1 hypothetical protein SDJN02_16936, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.3e-95

100

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Query:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAGKSCFFHACIWIGVGC
        WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAGKSCFFHACIWIGVGC
Subjt:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAGKSCFFHACIWIGVGC

XP_022951746.1 uncharacterized protein LOC111454487 [Cucurbita moschata]

5.2e-84

100

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Query:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSA
        WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSA
Subjt:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSA

XP_023001877.1 uncharacterized protein LOC111495931 [Cucurbita maxima]

1.2e-83

99.35

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Query:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSA
        WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSA+GNINDSFSA
Subjt:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LLD0 Uncharacterized protein

1.5e-76

91.61

Show/hide

Query:  MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWW WSGKHKEPR+SN GSA NASLDT  RE DTLKFPL NGAN+SSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSA
        GWSEPHGPGFQSDDE+DNSFAVLVPCYGR+YNDFVDETKNSILSA GNINDSFSA
Subjt:  GWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSA

A0A1S3BB05 uncharacterized protein LOC103488121

1.1e-76

91.61

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Query:  MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWW WSGKHKEPR+SN GSA NASLDT  RE DTLKFPL NGANISSSSRRV+RKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSA
        GWSEPHGPGFQSDDE+DNSFAVLVPCYGR+YNDFVDETKNSILSA GNINDSFSA
Subjt:  GWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSA

A0A5A7VFJ3 Ribosomal RNA small subunit methyltransferase A

2.4e-82

88.3

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Query:  MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWW WSGKHKEPR+SN GSA NASLDT  RE DTLKFPL NGANISSSSRRV+RKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAGKSCFFHACIWIGVGC
        GWSEPHGPGFQSDDE+DNSFAVLVPCYGR+YNDFVDETKNSILSA GNINDSFSAGKSCFF +   +GV C
Subjt:  GWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAGKSCFFHACIWIGVGC

A0A6J1GID2 uncharacterized protein LOC111454487

2.5e-84

100

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Query:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSA
        WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSA
Subjt:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSA

A0A6J1KME1 uncharacterized protein LOC111495931

5.6e-84

99.35

Show/hide

Query:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSA
        WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSA+GNINDSFSA
Subjt:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G38060.1 unknown protein

2.4e-10

Show/hide

Query:  SGSES------DDSDWSIGWSEPHGPGFQSDDE-TDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAG
        SGSES      D  +WS+GW+EPHGP FQSDDE  D  F VLVPCY R   +      N +LSA  N+ +    G
Subjt:  SGSES------DDSDWSIGWSEPHGPGFQSDDE-TDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAG

AT4G38060.2 unknown protein

3.1e-10

51.47

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Query:  SGSES------DDSDWSIGWSEPHGPGFQSDDE-TDNSFAVLVPCYGRVYNDFVDETKNSILSASGNI
        SGSES      D  +WS+GW+EPHGP FQSDDE  D  F VLVPCY R   +      N +LSA  N+
Subjt:  SGSES------DDSDWSIGWSEPHGPGFQSDDE-TDNSFAVLVPCYGRVYNDFVDETKNSILSASGNI

AT5G65480.1 unknown protein

1.8e-13

32.87

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Query:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        M+V+FP+L  W   G + + R    S    S       P   K   +   + SSS ++ +R W  R       E D +      G V   E DD +WSIG
Subjt:  MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILS
        W EPHGPGF+++D+    F VLVP Y +V +   ++  N   S
Subjt:  WSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCTGTGGCATTTCCCCAACTCTCCTGGTGGTCGTGGAGCGGGAAGCATAAAGAACCTCGAACCTCTAATGGATCCGCTTTTAACGCTTCACTAGATACAGTCATTCG
GGAACCGGATACTCTAAAATTTCCTTTAGCAAATGGTGCCAACATATCATCGTCGTCTAGAAGGGTGAGGCGGAAATGGCATAGTCGAGAAGAAAGGAAAATTGATAGGG
AATACGACATTGTTCTTGTTCCATCTGATGGAGGATGTGTTTCAGGGTCAGAATCTGATGATTCGGATTGGTCAATTGGATGGTCAGAACCCCATGGACCTGGATTCCAG
AGCGATGATGAAACAGACAACAGTTTTGCAGTACTGGTTCCATGTTATGGACGCGTTTACAATGATTTTGTGGATGAAACAAAGAACAGTATCCTAAGTGCTTCTGGGAA
CATCAACGATAGCTTTTCTGCAGGTAAGAGTTGCTTCTTCCATGCTTGCATTTGGATTGGGGTTGGGTGTTAG

mRNA sequence

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Protein sequence

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MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQ
SDDETDNSFAVLVPCYGRVYNDFVDETKNSILSASGNINDSFSAGKSCFFHACIWIGVGC

Carg22510 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome