; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg22616 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22616
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionHistone H3
Genome locationCarg_Chr17:5048025..5048312
RNA-Seq ExpressionCarg22616
SyntenyCarg22616
Gene Ontology termsGO:0000786 - nucleosome (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR000164 - Histone H3/CENP-A
IPR007125 - Histone H2A/H2B/H3
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF6094087.1 hypothetical protein HJG60_006075 [Phyllostomus discolor]1.3e-2361.95Show/hide
Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD--------------------CSKILTCVRFMLRESRLCLRI
        MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKS                     C K L CV   LRES  C + 
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD--------------------CSKILTCVRFMLRESRLCLRI

Query:  FNWPGGLEVRELR
         +W  G   REL+
Subjt:  FNWPGGLEVRELR

KAG7013881.1 histone H3.2, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-43100Show/hide
Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSDCSKILTCVRFMLRESRLCLRIFNWPGGLEVRELREL
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSDCSKILTCVRFMLRESRLCLRIFNWPGGLEVRELREL
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSDCSKILTCVRFMLRESRLCLRIFNWPGGLEVRELREL

PNI32233.1 H3F3B isoform 11 [Pan troglodytes]8.9e-2563.72Show/hide
Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD--------------------CSKILTCVRFMLRESRLCLRI
        MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKS                     CSKI TCV   LRES  C + 
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD--------------------CSKILTCVRFMLRESRLCLRI

Query:  FNWPGGLEVRELR
         +W  G   REL+
Subjt:  FNWPGGLEVRELR

PNJ87933.1 H3F3B isoform 4 [Pongo abelii]4.4e-2462.83Show/hide
Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD--------------------CSKILTCVRFMLRESRLCLRI
        MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKS                     CSKI  CV   LRES  C + 
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD--------------------CSKILTCVRFMLRESRLCLRI

Query:  FNWPGGLEVRELR
         +W  G   REL+
Subjt:  FNWPGGLEVRELR

PWA66317.1 RNA-directed DNA polymerase, eukaryota, Reverse transcriptase zinc-binding domain protein [Artemisia annua]2.9e-2362.71Show/hide
Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD----------------CSKILTCVRFM------LRESR--L
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS                      T +RF       L+E+R  L
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD----------------CSKILTCVRFM------LRESR--L

Query:  CLRIFNWPGGLEVRELRE
        C +I +W GGL V+ LR+
Subjt:  CLRIFNWPGGLEVRELRE

TrEMBL top hitse value%identityAlignment
A0A2J8KB34 H3F3B isoform 114.3e-2563.72Show/hide
Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD--------------------CSKILTCVRFMLRESRLCLRI
        MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKS                     CSKI TCV   LRES  C + 
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD--------------------CSKILTCVRFMLRESRLCLRI

Query:  FNWPGGLEVRELR
         +W  G   REL+
Subjt:  FNWPGGLEVRELR

A0A2J8Y104 H3F3B isoform 42.1e-2462.83Show/hide
Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD--------------------CSKILTCVRFMLRESRLCLRI
        MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKS                     CSKI  CV   LRES  C + 
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD--------------------CSKILTCVRFMLRESRLCLRI

Query:  FNWPGGLEVRELR
         +W  G   REL+
Subjt:  FNWPGGLEVRELR

A0A3B5K558 Histone domain-containing protein3.7e-2462.5Show/hide
Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD-------------------CSKILTCVRFMLRESRLCLRIF
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKS                    CS+  TC     R S  CL+  
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD-------------------CSKILTCVRFMLRESRLCLRIF

Query:  NWPGGLEVRELR
        +WPG    REL+
Subjt:  NWPGGLEVRELR

A0A665T2W2 Histone domain-containing protein2.8e-2462.5Show/hide
Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD-------------------CSKILTCVRFMLRESRLCLRIF
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKS                    CS+  TC     RES  C +  
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD-------------------CSKILTCVRFMLRESRLCLRIF

Query:  NWPGGLEVRELR
        +WP     RELR
Subjt:  NWPGGLEVRELR

K7EP01 Histone H3.33.3e-2563.72Show/hide
Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD--------------------CSKILTCVRFMLRESRLCLRI
        MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKS                     CSKI TCV   LRES  C + 
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD--------------------CSKILTCVRFMLRESRLCLRI

Query:  FNWPGGLEVRELR
         +W  G   REL+
Subjt:  FNWPGGLEVRELR

SwissProt top hitse value%identityAlignment
P59226 Histone H3.22.3e-23100Show/hide
Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS

Q402E1 Histone H3.22.3e-23100Show/hide
Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS

Q6LBE3 Histone H3.22.3e-23100Show/hide
Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS

Q6LCK1 Histone H3.22.3e-23100Show/hide
Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS

Q71T45 Histone H3.22.3e-23100Show/hide
Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS

Arabidopsis top hitse value%identityAlignment
AT1G09200.1 Histone superfamily protein1.6e-24100Show/hide
Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS

AT3G27360.1 Histone superfamily protein1.6e-24100Show/hide
Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS

AT5G10390.1 Histone superfamily protein1.6e-24100Show/hide
Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS

AT5G10400.1 Histone superfamily protein1.6e-24100Show/hide
Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS

AT5G65360.1 Histone superfamily protein1.6e-24100Show/hide
Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGCACCAAGCAAACAGCCCGAAAGTCCACCGGCGGTAAGGCTCCTCGTAAGCAATTGGCGACGAAGGCTGCTCGGAAATCGGCTCCGGCGACCGGAGGAGTCAA
GAAGCCGCACAGATTCCGTCCAGGGACTGTTGCGCTGAGGGAGATCAGGAAGTACCAGAAGAGCGATTGTTCGAAGATACTAACCTGTGTGCGATTCATGCTAAGAGAGT
CACGATTATGCCTAAGGATATTCAATTGGCCAGGCGGATTAGAGGTGAGAGAGCTTAGAGAGCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGCACCAAGCAAACAGCCCGAAAGTCCACCGGCGGTAAGGCTCCTCGTAAGCAATTGGCGACGAAGGCTGCTCGGAAATCGGCTCCGGCGACCGGAGGAGTCAA
GAAGCCGCACAGATTCCGTCCAGGGACTGTTGCGCTGAGGGAGATCAGGAAGTACCAGAAGAGCGATTGTTCGAAGATACTAACCTGTGTGCGATTCATGCTAAGAGAGT
CACGATTATGCCTAAGGATATTCAATTGGCCAGGCGGATTAGAGGTGAGAGAGCTTAGAGAGCTGTGA
Protein sequenceShow/hide protein sequence
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSDCSKILTCVRFMLRESRLCLRIFNWPGGLEVRELREL