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Carg22631 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg22631
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor IBH1
Genome locationCarg_Chr17:4897604..4898047
RNA-Seq ExpressionCarg22631
SyntenyCarg22631
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044549 - Transcription factor IBH1-like, bHLH domain
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575326.1 Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. sororia]2.1e-73100Show/hide
Query:  MASKSGRTPIRSTSSTLRLARTFLRSFANIKSQEPAILPSPPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTLITRRRHHHRSDDRV
        MASKSGRTPIRSTSSTLRLARTFLRSFANIKSQEPAILPSPPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTLITRRRHHHRSDDRV
Subjt:  MASKSGRTPIRSTSSTLRLARTFLRSFANIKSQEPAILPSPPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTLITRRRHHHRSDDRV

Query:  GKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICDHQFSTN
        GKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICDHQFSTN
Subjt:  GKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICDHQFSTN

KAG7025295.1 Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. argyrosperma]5.6e-4270.39Show/hide
Query:  MASKSGRTPIRSTSSTLRLARTFLRSFANIKSQEP--AILPSPPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTLITRRRHHHRS--
        MAS+SG TP+ S+SS+LRLARTFLRSF+ IKS+ P  A   S  ELRRRSRRIK+ AYSSMAR AGP+ AWARALLFKL TRARH TL+ RRR    S  
Subjt:  MASKSGRTPIRSTSSTLRLARTFLRSFANIKSQEP--AILPSPPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTLITRRRHHHRS--

Query:  -DDRVGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICDHQFSTN
         DD VGKLRRL+PGG+ MDVCTLLEET +YI CLSAQVKVM AI  H  STN
Subjt:  -DDRVGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICDHQFSTN

XP_008464343.1 PREDICTED: transcription factor IBH1 [Cucumis melo]3.1e-4068.03Show/hide
Query:  SKSGRTPIRSTSSTLRLARTFLRSFANIKSQEPAILPS--PPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTLITRRRHHHRS-DDR
        SKS  T + STSS  R ARTFLR F+ IKSQ  A   S  P +L+R+S+RIKM+AYSSMAR AGPR AWARALLFKL+TR RHRTL+ R+R    S DD+
Subjt:  SKSGRTPIRSTSSTLRLARTFLRSFANIKSQEPAILPS--PPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTLITRRRHHHRS-DDR

Query:  VGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICDHQFST
        VGKLRRL+PGGE+MDVCTLLEET  YI CLS QVKVMKAI D   ST
Subjt:  VGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICDHQFST

XP_023005092.1 transcription factor IBH1 [Cucurbita maxima]1.2e-3969.39Show/hide
Query:  MASKSGRTPIRSTSSTLRLARTFLRSFANIKSQEP--AILPSPPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTLITRRRHHHRS--
        MA +SG TP+ S+SS+LRLARTFLRSF+ IKS+ P  A   S  ELRRRSRRIK+ AYSSMAR AGP+  WARALLFKL TRARHRT + RR     S  
Subjt:  MASKSGRTPIRSTSSTLRLARTFLRSFANIKSQEP--AILPSPPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTLITRRRHHHRS--

Query:  -DDRVGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICDH
         DD VGKLRRLVPGG+ MDVCTLLEET +YI CLSAQVKVM AI  H
Subjt:  -DDRVGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICDH

XP_023548405.1 transcription factor IBH1 [Cucurbita pepo subsp. pepo]1.5e-6691.16Show/hide
Query:  MASKSGRTPIRSTSSTLRLARTFLRSFANIKSQEPAILPSPPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTLITRRRHHHRSDDRV
        MASKSGRTPIRSTS+ LRLARTFLRSFANIKSQEPAILPSPPEL+R+SRRIKM+AYSSMAR AGPRCAWARALLFKLR RARHRTLITRRR+HH SDDRV
Subjt:  MASKSGRTPIRSTSSTLRLARTFLRSFANIKSQEPAILPSPPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTLITRRRHHHRSDDRV

Query:  GKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICDHQFSTN
        GKLRRLVPGGE MDVC+LLEETGEYIQCL  QVKVMKAICDHQFSTN
Subjt:  GKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICDHQFSTN

TrEMBL top hitse value%identityAlignment
A0A0A0KDQ3 Uncharacterized protein1.3e-3162.5Show/hide
Query:  SKSGRTPIRSTSSTLRLARTFLRSFANIKSQEPAILPSPPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTLITR-RRHHHRSDDRVG
        SKS  T + STSS L  ART   +FA+           P +L+R+SRRIKM AYSSMAR AG R AWARALLF+L TR RH+TL+ R RR    SDD VG
Subjt:  SKSGRTPIRSTSSTLRLARTFLRSFANIKSQEPAILPSPPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTLITR-RRHHHRSDDRVG

Query:  KLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICDHQFS
        KLRRL+PGGE+MDVCTLLEET  YI CLS QVKVMKAI +H  S
Subjt:  KLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICDHQFS

A0A1S3CLD3 transcription factor IBH11.5e-4068.03Show/hide
Query:  SKSGRTPIRSTSSTLRLARTFLRSFANIKSQEPAILPS--PPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTLITRRRHHHRS-DDR
        SKS  T + STSS  R ARTFLR F+ IKSQ  A   S  P +L+R+S+RIKM+AYSSMAR AGPR AWARALLFKL+TR RHRTL+ R+R    S DD+
Subjt:  SKSGRTPIRSTSSTLRLARTFLRSFANIKSQEPAILPS--PPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTLITRRRHHHRS-DDR

Query:  VGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICDHQFST
        VGKLRRL+PGGE+MDVCTLLEET  YI CLS QVKVMKAI D   ST
Subjt:  VGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICDHQFST

A0A5D3BPL2 Transcription factor IBH11.5e-4068.03Show/hide
Query:  SKSGRTPIRSTSSTLRLARTFLRSFANIKSQEPAILPS--PPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTLITRRRHHHRS-DDR
        SKS  T + STSS  R ARTFLR F+ IKSQ  A   S  P +L+R+S+RIKM+AYSSMAR AGPR AWARALLFKL+TR RHRTL+ R+R    S DD+
Subjt:  SKSGRTPIRSTSSTLRLARTFLRSFANIKSQEPAILPS--PPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTLITRRRHHHRS-DDR

Query:  VGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICDHQFST
        VGKLRRL+PGGE+MDVCTLLEET  YI CLS QVKVMKAI D   ST
Subjt:  VGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICDHQFST

A0A6J1KS83 transcription factor IBH15.6e-4069.39Show/hide
Query:  MASKSGRTPIRSTSSTLRLARTFLRSFANIKSQEP--AILPSPPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTLITRRRHHHRS--
        MA +SG TP+ S+SS+LRLARTFLRSF+ IKS+ P  A   S  ELRRRSRRIK+ AYSSMAR AGP+  WARALLFKL TRARHRT + RR     S  
Subjt:  MASKSGRTPIRSTSSTLRLARTFLRSFANIKSQEP--AILPSPPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTLITRRRHHHRS--

Query:  -DDRVGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICDH
         DD VGKLRRLVPGG+ MDVCTLLEET +YI CLSAQVKVM AI  H
Subjt:  -DDRVGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICDH

A0A7N2RCD6 Uncharacterized protein5.7e-2447.52Show/hide
Query:  IRSTSSTLRLARTFLRSFANIKSQEPAILPSPPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTLITRRRHHHR--------SDDRVG
        + + S  ++ AR F+R+   ++   P+   S  E+R+RS+RIK+ AYSSMA   G R AW+RA+LFKLR RARH  ++ RR    R           +  
Subjt:  IRSTSSTLRLARTFLRSFANIKSQEPAILPSPPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTLITRRRHHHR--------SDDRVG

Query:  KLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICDH
        KLR+LVPGG++MD+C+LLEET  YI CLS QVKVM+ I DH
Subjt:  KLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICDH

SwissProt top hitse value%identityAlignment
Q01I07 Transcription factor IBH15.3e-1135.58Show/hide
Query:  LARTFLRSFANIKSQEPAILPSPPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTL------ITRRR---------------------
        LA  FLR+ + I    P        + RR+R I+  AYSSMAR A PR AW+RALL + R R R RTL      + RRR                     
Subjt:  LARTFLRSFANIKSQEPAILPSPPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTL------ITRRR---------------------

Query:  -------------HHHRSDDRVGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICD
                            R   LRRLVPGG  M+  +LLEET +Y++ L AQV++M+ + D
Subjt:  -------------HHHRSDDRVGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICD

Q7XAQ6 Transcription factor LAX PANICLE 18.2e-0442.31Show/hide
Query:  ITRRRHHHRSDDRVGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKA
        +  R   HR  DR   LR LVPGG  MD  ++LE+   Y++ L AQV + +A
Subjt:  ITRRRHHHRSDDRVGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKA

Q7XR02 Transcription factor IBH14.1e-1135.58Show/hide
Query:  LARTFLRSFANIKSQEPAILPSPPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTL------ITRRR---------------------
        LA  FLR+ + I    P        + RR+R I+  AYSSMAR A PR AW+RALL ++R R R RTL      + RRR                     
Subjt:  LARTFLRSFANIKSQEPAILPSPPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTL------ITRRR---------------------

Query:  -------------HHHRSDDRVGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICD
                            R   LRRLVPGG  M+  +LLEET +Y++ L AQV++M+ + D
Subjt:  -------------HHHRSDDRVGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICD

Q9SKX1 Transcription factor IBH15.7e-1339.39Show/hide
Query:  FLRSFANIKSQEPAILPSPPELRRRSRRIKMMAYSSMARTAGPRC-AWARALLFKLR---------TRARHRTLITRRRHHHRS---DDRVGKLRRLVPG
        FL+S +N++ Q P    +P +   R R+IK  AY SMAR AG     W+RALL +           +R + +    RRR + R+   ++   +LR LVPG
Subjt:  FLRSFANIKSQEPAILPSPPELRRRSRRIKMMAYSSMARTAGPRC-AWARALLFKLR---------TRARHRTLITRRRHHHRS---DDRVGKLRRLVPG

Query:  GESMDVCTLLEETGEYIQCLSAQVKVMKAICD
        G  M+   L+EET  YI+CLS QVKVM+ + D
Subjt:  GESMDVCTLLEETGEYIQCLSAQVKVMKAICD

Arabidopsis top hitse value%identityAlignment
AT2G14760.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein8.4e-0434.69Show/hide
Query:  RRHHHRSDDRVGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKA
        R+   R ++R+  L+ LVP G  +D+ T+LEE  +Y++ L  Q+K++ +
Subjt:  RRHHHRSDDRVGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKA

AT2G18969.1 BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors2.2e-0446.34Show/hide
Query:  RVGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAI
        R+ +L++L+PGGE M++  +L E G YI CL  Q+ V+K+I
Subjt:  RVGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAI

AT2G43060.1 ILI1 binding bHLH 14.0e-1439.39Show/hide
Query:  FLRSFANIKSQEPAILPSPPELRRRSRRIKMMAYSSMARTAGPRC-AWARALLFKLR---------TRARHRTLITRRRHHHRS---DDRVGKLRRLVPG
        FL+S +N++ Q P    +P +   R R+IK  AY SMAR AG     W+RALL +           +R + +    RRR + R+   ++   +LR LVPG
Subjt:  FLRSFANIKSQEPAILPSPPELRRRSRRIKMMAYSSMARTAGPRC-AWARALLFKLR---------TRARHRTLITRRRHHHRS---DDRVGKLRRLVPG

Query:  GESMDVCTLLEETGEYIQCLSAQVKVMKAICD
        G  M+   L+EET  YI+CLS QVKVM+ + D
Subjt:  GESMDVCTLLEETGEYIQCLSAQVKVMKAICD

AT3G21330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.2e-0432.79Show/hide
Query:  ITRRRHHHRSDDRVGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICDHQFSTN
        +  R+   R  +++  L+ LVPGG  MD  ++L+E   Y++ L AQVK ++ +      TN
Subjt:  ITRRRHHHRSDDRVGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAICDHQFSTN

AT4G30180.1 sequence-specific DNA binding transcription factors;transcription regulators4.9e-0432.18Show/hide
Query:  AWARALLFKLRTRARHRTLITRRRHHHR---------------SDDRVGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAI
        AW+R LL KL + +   T  +      R                ++R+ +L++L+PGGE M+V  +L E G YI+CL  Q   +K+I
Subjt:  AWARALLFKLRTRARHRTLITRRRHHHR---------------SDDRVGKLRRLVPGGESMDVCTLLEETGEYIQCLSAQVKVMKAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTAAATCGGGTCGAACCCCGATCCGATCTACCTCCTCCACTCTCCGATTGGCTCGAACCTTCCTCCGATCCTTTGCCAACATCAAATCCCAAGAACCCGCCAT
CCTTCCCTCGCCTCCCGAGCTCAGACGCCGGAGTCGACGCATAAAAATGATGGCATATTCCTCCATGGCTCGTACTGCGGGGCCACGGTGTGCTTGGGCTAGAGCCCTCC
TCTTCAAGCTTCGGACGCGAGCTAGACACCGGACTCTAATAACACGGCGCCGCCACCACCACCGCTCGGACGACCGGGTGGGGAAGCTCCGGCGGTTGGTGCCCGGTGGG
GAGAGCATGGATGTGTGCACCTTGTTAGAGGAAACTGGGGAGTATATCCAATGCCTGAGCGCGCAGGTTAAGGTGATGAAAGCCATATGTGATCATCAGTTTTCAACCAA
TTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTAAATCGGGTCGAACCCCGATCCGATCTACCTCCTCCACTCTCCGATTGGCTCGAACCTTCCTCCGATCCTTTGCCAACATCAAATCCCAAGAACCCGCCAT
CCTTCCCTCGCCTCCCGAGCTCAGACGCCGGAGTCGACGCATAAAAATGATGGCATATTCCTCCATGGCTCGTACTGCGGGGCCACGGTGTGCTTGGGCTAGAGCCCTCC
TCTTCAAGCTTCGGACGCGAGCTAGACACCGGACTCTAATAACACGGCGCCGCCACCACCACCGCTCGGACGACCGGGTGGGGAAGCTCCGGCGGTTGGTGCCCGGTGGG
GAGAGCATGGATGTGTGCACCTTGTTAGAGGAAACTGGGGAGTATATCCAATGCCTGAGCGCGCAGGTTAAGGTGATGAAAGCCATATGTGATCATCAGTTTTCAACCAA
TTGA
Protein sequenceShow/hide protein sequence
MASKSGRTPIRSTSSTLRLARTFLRSFANIKSQEPAILPSPPELRRRSRRIKMMAYSSMARTAGPRCAWARALLFKLRTRARHRTLITRRRHHHRSDDRVGKLRRLVPGG
ESMDVCTLLEETGEYIQCLSAQVKVMKAICDHQFSTN